— Rational design of CRISPR/Cas target.
2025-06-13 19:32:15, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
AGAAGAGGCCTTGGGTCCTATGAGGGTTTG70866704 ATGTCACATTGTAGG
AGAAATTATCCTGCCGCTGATTAGTTAAAA64197658 ATGTCACATTGTGGG
CACAGCACCCTGCTTGGCAGCACATGATTG122810833 ATGTCACATTGTAGG
ACCTCTACAATTTGATTGTTTTGTGATAAG148645910 ATGTCACATTGTAGG
ATCTTTGAATTATAAGCAATGACTAAATGT93660337 ATGTCACATTGTGGG
CTTCTTGGCTATACTTGTTTGTTCTTTCTG76241956 ATGTCACATTGTTGG
GCTGTAGGGCATTTTCTTAATTAGTGACTG117818331 ATGTCACATTGTGGG
TTCCACGGGAAGGAAGAGGACTATGAGCCC44503104 ATGTCACATTGTAGG
ATTCCTACAATGACTAATTTCAAATTGCCA75734303 ATGTCACATTGTGGG
CACTGGGTTCTTGACGTGTCAAGGTGAGGA7990320 ATGTCACATTGTGGG
GTAATTAGTGTGTGAATGCCAGGTGAATGC4237589 ATGTCACATTGTGGG
TTCTGGTGAGAGGAAAGATGATTTGGATTT25305983 ATGTCACATTGTTGG
TTGGTCCAGTGACACCTTCATATCCATACA4240520 CCCACAATGTGACAT
TGTGGAAGTCAGAGCACTATTGAGTTTCAG100074266 CCCACAATGTGACAT
TTCTTCTGACACTGGCTTTTTGGAACCAAC192030196 CCCACAATGTGACAT
CCCCGCAGATCCCAGAGGCCACACTGAGGC158845316 CCCACAATGTGACAT
TCTAAACAGGTTTTAGGTTTTTAGGTTTTG111556272 CCAACAATGTGACAT
GAACGCCCTCAGCACTCAGCTCAGCCACAC94909127 CCAACAATGTGACAT
ACAGCAATGCATCCCATCCCACGTATTCTT10840463 CCTACAATGTGACAT
TTGCATCTGAGAATAAAGCCTTTATCCACA52648416 CCTACAATGTGACAT
TTAAAACAAGGCAAAGCTAGAACACGAAGG27436667 CCTACAATGTGACAT
ATGTCAAATGAAAGGCAAAACTTAACTCCT93670613 CCAACAATGTGACAT
AAATCTCAAAAAAGAAGAAAGTAACCGTTT103386290 CCAACAATGTGACAT
TACAAGAGATGGCTTCTTAAGGTTCCATAT110399945 CCCACAATGTGACAT
TTTAACTTTTCAGAGTAAGCAAGCTCTGTC22549871 CCAACAATGTGACAT
GCTAGGAGGAGGGTCCCAAAGCTCACCTCA26478902 CCCACAATGTGACAT
TTATAAGTTCACAGAGAACTACAACAGAAA60249717 CCAACAATGTGACAT
GAAAAAATAGGTATAGAACATTAAGATTTA132387656 CCCACAATGTGACAT
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/ATGTCACATTGTNGGen |
db : mm39 |
k : 0 |
strand : ATGTCACATTGTNGG |
format : html |
download :
0.006 | 0.006 | search_start;
0.089 | 0.083 | search_plus_done; http://172.18.8.138:28851/match?q=ATGTCACATTGTNGG&k=0&no_gap=0&offset=0&limit=200
0.101 | 0.012 | search_minus_done; http://172.18.8.138:28851/match?q=CCNACAATGTGACAT&k=0&no_gap=0&offset=0&limit=188
0.103 | 0.003 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.