— Rational design of CRISPR/Cas target.
2025-07-18 06:42:41, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
GTCCCACAGTCCCCCAGAGGACTCTCCAAC4534552 CCCCAGGCGCC
CTCCGCGGAGTCCAGGATCCAAGAAGGCTC6639193 CCGCAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTTTGCG27774682 CCGCAGGCGCC
TCTGAACACAAAGCGGCCACAAGACAGTGG36077823 CCACAGGCGCC
AAGAGGGCATAATCATGCTTAAAGCCACTG38548277 CCCCAGGCGCC
CAGCCTAAAGAAGATGGTGAGCACTGCACT45130044 CCACAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTTTGCG49366016 CCGCAGGCGCC
GCGCGGAGCCATGTCTCCCCGCGCTCGGGG54234017 CCCCAGGCGCC
GCACCCCCCACCCCCACCCAACCGGCCGCC60606165 CCTCAGGCGCC
TAGACACCCTTTTCTTTGGGGTAGGCTCTG60744547 CCCCAGGCGCC
TGCTCCTTGCGCTGCAGGTAGACCTTACTT63152091 CCCCAGGCGCC
TTAGGACTGAGGGGCTGAGGGGACCATGGT78185056 CCTCAGGCGCC
CCTTTTCCCTTCAGCCCTGGGCCAGAGTAC81176398 CCACAGGCGCC
GAAGTATCCCTGTGGCATGCTCACTCTGAC92316442 CCTCAGGCGCC
TGAGAAAAGCCAGGGGGACATTCCTCCTGC92326482 CCTCAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTTTGCG98220688 CCGCAGGCGCC
GCTCTATGGGATCTAGTTGTCTCCTAACCT109845801 CCACAGGCGCC
TCTCATGGACTTGCCCTGCCTCTACTGCTT119474853 CCACAGGCGCC
TAGATCAGGAGTGTCAGCATGTCCCTCTGT119984118 CCCCAGGCGCC
GGGCCAGGCAGGGGGCCGGGCAAAAGGTAG120532675 CCACAGGCGCC
GTTACAGGGCACTGCCAGAATGAGGGATTG127164584 CCCCAGGCGCC
CATCCGATTTGCCATCATCGCTTACCGCTG135512479 CCTCAGGCGCC
GCTTCCCTCCACTAAAAAGTACTAGAAGTT136494027 CCTCAGGCGCC
TCTGACCTCACTTCACATTGTAAAATGCTT136622912 CCGCAGGCGCC
ATCCTCTGGTATTCTTTCTGTACTCCACCC139727978 CCACAGGCGCC
CACTGACAATCCTCTTAAGCTTCATTTGCG140897821 CCGCAGGCGCC
CTTGTTGTGGGGTGAACCAGATGCGTCATC165144125 CCACAGGCGCC
TCCCATGGATCTGACATCCTCGTCTGGACT170798892 CCTCAGGCGCC
ACTTGGCGCAGGCCGAAGCCTCTGCGCGGC177624187 CCGCAGGCGCC
ACAGCTCTCCTGGGTAAAATTTATTATCTA184948739 CCCCAGGCGCC
GGTCCCACGGTCCCCAGAGGACTCTTCGAG187225566 CCTCAGGCGCC
GAAGGGGGAGGTGGGAGGAGGAGAGCGACG191711399 CCCCAGGCGCC
ACAAGGTCCCCTCTTCTGCTCCACCTGCAA6508737 CCCCAGGCGCC
GACAGTCGGGTGGCAGCCTTGGGTGTCACA10843112 CCTCAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTTTGCG11357278 CCACAGGCGCC
TGTCCCACAGACCCCAGAGGACTCTCCATG12916808 CCACAGGCGCC
GTGTGTATAAACTCAGAGGCCAGAGGCCAA18637181 CCTCAGGCGCC
AACTGCCTCCTGAGCCTGCACGAGATCACT18786295 CCCCAGGCGCC
AGGGAGAAGTTAATGAAGGACATGAACTTT20972569 CCCCAGGCGCC
CCCTGACCCTGAGGCTGAGACCTAGCGCGA24944528 CCTCAGGCGCC
TGCTCTTGCGCCAGGTGCGCTCTGCCAAGT25290969 CCCCAGGCGCC
TACGGGATTGTCCAGGAGGCCAGAGAGTGC25488102 CCACAGGCGCC
GGACCACTGGCCCTCAGACCACAGCCAAGT28612631 CCCCAGGCGCC
GGCCTGGAGTGTCTACATCCCTTCCTTCAG31716100 CCCCAGGCGCC
CTACAAAGGTGGGGGAGAAGGCTGGCCAGG32545829 CCACAGGCGCC
CCCCCACGCCTCGGCGGGAGGCGTCCTGGC38241620 CCGCAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTTTGCA41108723 CCGCAGGCGCC
AGTCCCACGGTACCCAGAGGACACTTCACA41300327 CCGCAGGCGCC
GCTGGCCGCGGAGGGAGGCTCGCCCGCGAG44999927 CCCCAGGCGCC
AATTCAGGAAAATCAACCCAACTCCAATAT48795050 CCACAGGCGCC
GGTCTGCTGCAGACGCGCGCAGGTGGCTGG52748701 CCGCAGGCGCC
TGCTTAAAATAGACCTGGCACGGCGCACGG57746923 CCCCAGGCGCC
AGTCCCAAGGTCCCCAGAGGACTCTCCTCA59677407 CCACAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTTTGCG67966255 CCGCAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTCTGCG68383070 CCGCAGGCGCC
GCCGTTGCGATGGCAGCGTTTGCGGTGGAT80469258 CCCCAGGCGCC
GCACGTCCTCGTAAGTGGCCGCGCTCGAGT83555284 CCCCAGGCGCC
CAGTTTTTCAAGTCCTATGTAACCAGCTTC84391353 CCTCAGGCGCC
TACCTGATAGCCTGAGGTGGTAGGTCTGGA84444183 CCACAGGCGCC
ACAAAGGGAGAAAAGCAATAACCCTACCCC92781091 CCCCAGGCGCC
CAATCAAAGCAGCCTGTCACCTGCCCATCA92832327 CCACAGGCGCC
CTTTACTGACTACTGCGATTTTAAAAAATT92893399 CCTCAGGCGCC
GGGGCTGATATGAAAGCTCTGGTTAACTCT115770860 CCTCAGGCGCC
GAAGGGGAAGAGTAAGTTGCAGGCCTCACA118320780 CCCCAGGCGCC
CCCCAGAGCTCTTTCAAGTTAAAAGCAGTG121457172 CCTCAGGCGCC
GGCATGTCTTCTGGGCACTGTGTCCCCAGC127984401 CCACAGGCGCC
GAATTGGTCACTTTGGAACAGTCTCGGTGT138204215 CCTCAGGCGCC
AGGAGTGCTGGATGCATTTGGATGACGGTT144397928 CCGCAGGCGCC
CTGCTCGAGTTGGACTCCGACTCTTGGGCA150863379 CCACAGGCGCC
AGCATCACACCTGTCTTATCAACACATCTA154099695 CCTCAGGCGCC
AGCCTCCTCACCTGGCATGCCTGCCTGCCT155119389 CCACAGGCGCC
GCTGTTAGAAGTCCTGTTCCCAGCAGGCCT157363983 CCACAGGCGCC
TCTACACTGCTGTAACAGTGACATTTAGAC164932069 CCACAGGCGCC
GATGTGCAGGACACCGAGCCTGGAATCAAA166389038 CCTCAGGCGCC
TAAGGATTGAACTCAAACCCTCAGGCTTGG168572384 CCGCAGGCGCC
ATCTCACAGGGTGAGATTCACCCTTCCCTC169632230 CCTCAGGCGCC
TGCCTTGGCAGTGAAGTCATTGACGGAATA172856909 CCACAGGCGCC
GACAGTGTGGGAGAGCTGTGGCAGATCTTT179910544 CCTCAGGCGCC
TAGTAAGACACCCGTGCTTGCTTCTCCCGG180596040 CCACAGGCGCC
AGCTCTGGGACACCCTGACGTCTCTGCTCT8993372 CCACAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTTTGTG10946444 CCGCAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTTTGCA12652385 CCGCAGGCGCC
TTCTGGTCGCCTCCTGTTCAATTCTGGGTT23623241 CCTCAGGCGCC
AAGCCTGATGACCTGAGTCTCATGTTTGAG36020051 CCCCAGGCGCC
AAACTGCACAGAACATACGACATGCCTTCA37727295 CCACAGGCGCC
AGTCCCACAGTCTCCAGAGAACTTTCTACC44341320 CCACAGGCGCC
CGCAGACCGCCACTCTTTTGGCGCTTTCCG51467892 CCCCAGGCGCC
GTCGTCCCCACTCACCTGTGTGACACGGCC55761207 CCCCAGGCGCC
CAGCCTCCATAAACTCCTAATTCTAGGCAC73185279 CCACAGGCGCC
AAGCAGGATGACAGGAATGCCCTCAATGGG83934260 CCCCAGGCGCC
GAGGTGGGTCGCTGTAGGGTGTTGGGGTGG109030731 CCGCAGGCGCC
ATACCTAATTTTATTGATCACTTGCTATGT116125166 CCCCAGGCGCC
CTGGCACAATCAGATGACCTCTGCTGGCTT116547765 CCACAGGCGCC
TACTGCCTATTATTCTTGAATGCTCAAAAG120807378 CCCCAGGCGCC
TGGACTAGACAGCAGCCAGAGATGCTTGGA124288162 CCCCAGGCGCC
TGGGGCGGCAGAGGTGGCACCCGCCGGTGC127489116 CCGCAGGCGCC
CACTTTGGACCTCTCACTGGACCTTCTTTT134003213 CCTCAGGCGCC
TCTCTGAGCCTCAGTGCAGGAGCTGCCTGG140409490 CCTCAGGCGCC
CCTTCCTAAAGGAACGCATTCTAAGACATC145449164 CCACAGGCGCC
CCGCTCTGGGCCGCGCGCTTGCTCGCGCCT145693995 CCCCAGGCGCC
GCGGGCGCGGGGACCGCCCTGCCTTCGCGT6453868 CCCCAGGCGCC
GCTGTTAGAAGTTCTATTCCCAGCAGGCCT8456533 CCACAGGCGCC
CACTTTGGGCCTATCGCTGGACTTTCTTTT10684892 CCTCAGGCGCC
GCCAAGACGGCCTGATGACTTGACTTTAAG11126877 CCCCAGGCGCC
GGTCACACTGACCCTAGAGGACTCTCCATG12407760 CCACAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTTTGCG30996093 CCGCAGGCGCC
GGCCCGCCTCTAGCTTGATTCCACCTCCCG41503294 CCTCAGGCGCC
CTGGTTCCCTCTCTAATCCCTTTACAGCAG44533933 CCACAGGCGCC
TTATTCATCTCCAAATACCCCTCACATCCT53625663 CCACAGGCGCC
GTCCCAGGGGAGTCGCGGGCGCACCTGGAG57434225 CCTCAGGCGCC
ACTGCTTGGGGAGTATGAAGTCACATAGTG59574902 CCCCAGGCGCC
TGGGGGTCTGCCCGGCCTGAGAGGTTTGTG68344401 CCACAGGCGCC
CGGGTTCTCCTCGCCACTCGCCGCTGGTGG73931864 CCGCAGGCGCC
TGATGGTCAGCAGTTCCTCAGAGAACCACT79869224 CCACAGGCGCC
GCCAAACTCCTGTCAGGCATGTGCCCAGGC86831677 CCACAGGCGCC
GAGTCGCGCGCTGAACGGGGCGAACGGCCT88675828 CCGCAGGCGCC
GAGTCGCGCGCTGAACGGGGCGAACGGCCT88678791 CCGCAGGCGCC
GAGTCGCGCGCTGAACGGGGCGAACGGCCT88681726 CCGCAGGCGCC
GAGTCGCGCGCTGAACGGGGCGAACGGCCT88692011 CCGCAGGCGCC
GAGTCGCGCGCTGAACGGGGCGAACGGCCT88694939 CCGCAGGCGCC
GAGTCGCGCGCTGAACGGGGCGAACGGCCT88697867 CCGCAGGCGCC
GAGTCGAGCGCTGAACGGGGCGAACGGCCT88700803 CCGCAGGCGCC
GAGTCGAGCGCTGAACGGGGCGAACGGCCT88703726 CCACAGGCGCC
GAGTCGAGCGCTGAACGGGGCGAACGGCCT88706649 CCACAGGCGCC
GAGTCGCGCGCTGAACGGGGCGAACGGCCT88709567 CCGCAGGCGCC
GAGTCGCGCGCTGAACGGGGCGAACGGCCT88712504 CCGCAGGCGCC
GAGTCGCGCGCTGAACGGGGCGAACGGCCT88715414 CCGCAGGCGCC
GAGTCGCGCGCTGAACGGGGCGAACGGCCT88718337 CCGCAGGCGCC
GAGTCGCGCGCTGAACGGGGCGAACGGCCT88721271 CCGCAGGCGCC
GAGTCGCGCGCTGAGCGGGGCGAACGGCCT88724203 CCGCAGGCGCC
GTGTCAGACCGGGCAGGTACTAGGCGCTTT89134992 CCCCAGGCGCC
CATTGACAATCCTCTTAAGCTTCGTTTGTG90769357 CCGCAGGCGCC
CGGGGGTCTGCCCGGCCTGAGAGGTTTGTG108558019 CCACAGGCGCC
CATTAAGCAAGCAGATCGGCGGATCTCCCG115789285 CCACAGGCGCC
GGATGGCCACTGCCATGGCCCCTGCCTCCC117133413 CCTCAGGCGCC
CAGCTCTGGGGAATTCAAAGCCTCTGGCCT118473058 CCACAGGCGCC
GCTGCTAATCATCAAGAGTTTCTTCCGCAC124732405 CCCCAGGCGCC
GCCCTCTCCCCGCAGCGGGGGCGCCCCGCC129030675 CCCCAGGCGCC
AGCCTGGCCTCCCTCCCGCCAGCCAGCCAG129941383 CCGCAGGCGCC
GAAGAAAAACGACTGGCCGCAAAGACGAGC131222693 CCACAGGCGCC
GCTCTAGCGCACCTGGCGCCCTGGGCGCGC132812545 CCCCAGGCGCC
TGAGGCGAAAAGACTAACAGCTTGTTCCTC132977513 CCTCAGGCGCC
GCGGAGGAGCAGACGGTCCCGATCCCGGTC134651465 CCGCAGGCGCC
CCCAGAGGGAACCGTGAAGTTCCCCTGCCA141746846 CCCCAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTCTGCG143411862 CCGCAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTTTGCG143751515 CCGCAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTTTGCG143858694 CCGCAGGCGCC
GGGTGGGTGGAGCAGGCACCCCTGCCCTTC144687338 CCACAGGCGCC
TCCAGAGGATCTGATAACCTCTTCTGAGCT148682424 CCACAGGCGCC
CGAGACCCGGTGTCAGTCTCCTTGTGTCCT149022926 CCGCAGGCGCC
ACCAAGCAAAGGCGCAAGGACACTGGTCTC149074172 CCGCAGGCGCC
TTGTCTGGGCTGTGTGCACACTCTGAGGTG152084128 CCTCAGGCGCC
CCGAGTGTGGGAACGGCCGCGGCGCCCGGA155045321 CCCCAGGCGCC
GTTAGAGCTGAGTAAGACAAAGCACGTCCC155924288 CCGCAGGCGCC
CACTGACAATCCTCTTAAGCTTCGTCTACG6539713 CCGCAGGCGCC
GTCCTTCGGGAGCCGGGCGTCCACACTGAA23639889 CCCCAGGCGCC
GAAGGGCTAAGATTTGGCCATGAGCAGCGC24632595 CCCCAGGCGCC
CCAGCTCCCGCCGCCCTCCCGAGGTCCGCC24650046 CCTCAGGCGCC
CATCCTCCTCTTCATCCCGCTACCGCCTCT24687167 CCCCAGGCGCC
ACACATGGACCTGCCTTCTCCTTACAGATA24814554 CCTCAGGCGCC
CTTAGCGAGTGAGTTAAGTTAGTTTAGAAT28665840 CCACAGGCGCC
TATTCGCTTTGTAGAGGGCTTAAATCGCAT33102453 CCGCAGGCGCC
TTTCAGCAGCAACAGCAGCAGCAGCCACCG34919329 CCGCAGGCGCC
GTCTGTGTCCAACCTCACTTTCAATATGAT36337401 CCCCAGGCGCC
CCTCCACTGGCCAGCACAGCTCTCCTGTGG37376770 CCTCAGGCGCC
GCAAGAGGGCAGAGGCGGCCGCCCCCCGCC46014138 CCTCAGGCGCC
CTCCGCGGAGTCCCGGAGCCAAGAAGGCTC49885343 CCGCAGGCGCC
CTCCGCGGAGTCCCGGAGCCAAGAAGGCTC57719403 CCGCAGGCGCC
AGTCCCACAGACTCTAGAGGACTCTTCACA71105772 CCCCAGGCGCC
AGTCCCACGGTCTCCAGAGGACTCTCCACC80505994 CCACAGGCGCC
GAGCACACTCATCCGTCGGCCGCGGACGGC93090708 CCGCAGGCGCC
CCCCCGGGTGCATTGTGAAATTCCGGACAC93241999 CCTCAGGCGCC
AATTTGTGAGGAGCGGGTGTGGCGGCAGTC94022404 CCACAGGCGCC
TCTTGGGTATCTTAGGTTTTGGGCTAATAT94377637 CCACAGGCGCC
AATTTGTGAGGAGCGGGTGTGGCGGCAGTC95044056 CCACAGGCGCC
AATTTGTGAGGAGCGGGTGTGGCGGCAGTC95361306 CCACAGGCGCC
AATTTGTGAGGAGCGGGTGTGGCGGCAGTC95688249 CCACAGGCGCC
GAAAGTCACATGTTCAACATTGCAATCTTA96825189 CCTCAGGCGCC
AGGTAAAACTTCTTCCAGAAAATGGGTGGG102065369 CCCCAGGCGCC
GGGCGCGGGAGGGACGCCGCAGCTCGGCTC107551405 CCGCAGGCGCC
AGTCCCACAGTCTCCTGAGAACCCTCCACT109169674 CCACAGGCGCC
GAGCTGTGACCCTTGACCTTATTGAACACT113926920 CCACAGGCGCC
CAAGCTGACCCGAACCACGCTGTCCTCACG114265958 CCCCAGGCGCC
TAAAAATGCTTGCCTAGTGTGTGTTCAGCC116396072 CCACAGGCGCC
CCCACTCCTGCAAATTGTCCTCTGACCTCT117415419 CCACAGGCGCC
CCCAGCAGGAAACTCTGGGCACGTCACCAT117508919 CCCCAGGCGCC
CTCTACTGATCTGCTTTCTGAAATAAGCAG118860863 CCACAGGCGCC
GCTGTTAGAAGTCCTGTTCCCAGCAGGCCT123393911 CCACAGGCGCC
GCACACGAGGGTGATGACGAGCCACGAAGC124228000 CCGCAGGCGCC
CTAGGAGAAGGGGCGGGGCAGAGTCGGCCT124287378 CCTCAGGCGCC
GATTGGCCGTCGCGCGCCCTCGCGCCCGCC124583526 CCGCAGGCGCC
AGACGCTACATTTTTAGTCTTCAAGGAGAA125762717 CCACAGGCGCC
CTCAGCCCTGCCAGCGAGAGGATAAATGGC129452066 CCCCAGGCGCC
CTGAGATCCAACTCAGACAGCCAGGGTTGT129835681 CCACAGGCGCC
TGGCTCTGTAGAAAGCACACAGAGAACAGT132569907 CCACAGGCGCC
TCCACAAGCTGCTTCAGGCACCAGGGTTGA132749086 CCTCAGGCGCC
TACAACTACCTGCAACACTCTCTCTAACCT134230632 CCACAGGCGCC
AGTCATCGAGGTGGAAAGGAAGGGAAGTGG135084050 CCACAGGCGCC
CACTACGCGTTTGTAAGTGATGGCGACACC136071886 CCTCAGGCGCC
CATCCAAGCTCGGCGCCCGCGGCTCGGAGC138981613 CCACAGGCGCC
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/CCNCAGGCGCCen |
db : mm39 |
k : 0 |
strand : CCNCAGGCGCC |
format : html |
download :
0.006 | 0.006 | search_start;
0.161 | 0.155 | search_plus_done; http://172.18.8.138:28851/match?q=CCNCAGGCGCC&k=0&no_gap=0&offset=0&limit=200
0.194 | 0.033 | search_minus_done; http://172.18.8.138:28851/match?q=GGCGCCTGNGG&k=0&no_gap=0&offset=0&limit=0
0.194 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.