— Rational design of CRISPR/Cas target.
2025-07-18 10:01:37, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
TTTGTAGGTATGTACACATGAGTTTGTGTG3066002 CCCCAGGA GCC
TCGCGTTGAGTTGATCTTTAAAACTGCCAC3214203 CCTCAGG-GCC
ACCTGGCTCGGAAGGCCTCAGCCTCAGGAG3220132 CA GCAGGCGCC
GTGGATGCTCATAGTCAGCTATTGAATGGA3231480 CCACAGG-GCC
ACTACAGTGATCTGCAGCTTGTCTGGTGAC3235980 CCACAGGCT GCC
TTTTATTCTGTTTCTCATTCATGATTAGCA3264890 CCACAGGCT CC
GTGGATGCTCACAGTCAGCTATTGAATGGA3306696 CCACAGG-GCC
GTGGTGAATGAGAGATAACCTTTGATCACT3340603 CCACAGG-GCC
CCGGTGCCGGGAAACGAGGAAAGGGGTCAG3346595 CCCCAGGCC CC
CATCCACTGCACCTATGTATCCAGGGCAGA3489830 CCCCAGGCT CC
CAGGATCAACATGATGATGAGAACTGAGTT3535428 CCTCAGGCT GCC
AACTGGAAGACACATAAAATCTGCTCAGCT3624605 CCTCAGGC-CC
GTAAACAGAATGTCTCTATCAAATCTACTC3640523 CCTCAGG-GCC
GCAACTTGATATGCCATGGTTGATTGATAT3646206 CCACAGGA GCC
AGTCTCCCAACCAAAAGACAAATAAAAAAT3668965 CCTCAGG-GCC
GGCATTCCTGTACACTGGGGCATTGAACAC3797334 CCTCAGGC-CC
CCATTGCCGGGAAACGAGAGAAGGGGCCAG4049700 CCACAGGCA CC
TCCCTGGCTCTCCTTACCTTCCAGGGCGTC4057696 CCCCAGG-GCC
GTTTCTGAATAAAAGTGTCACTTCTTTTTT4062826 CCACAGGCA GCC
GTGTGTGTGTGTGTGTGTGTGTGTGTGTTT4318196 CCACAGG-GCC
CTCTCAGTCTTAGGAACACATCTAGTGCAG4377787 CCCCAGGCA GCC
GTGAGAGCACAGGGGTCCGCCCGGTTTCTG4510847 CCTCAGGCC CC
GTCCCACAGTCCCCCAGAGGACTCTCCAAC4534552 CCCCAGGCGCC
GTCTAATAAGCTTCAACTTGATCTTTAGCT4592181 CCACAGGCT CC
AGGACTTGCTCCAAGGTCTCAGCCCCTCTA4596864 CCTCAGG-GCC
GTGTTCTAGGGGATCTTAGATTTCTTAGCT4609125 CCCCAGGC-CC
GGCACTCTCCTACACTGGGGTATGGAACAC4625457 CCTCAGGC-CC
GTAGATTTCCACTGTTGCCATAGACCATTG4661548 CCTCAGC CGCC
ATCTTACTGATCTTATGGACTGAGCCACCT4683227 CCCCAGGC-CC
ACATCAGAGGCCTTTACCTGAAGAGCCATC4843365 CCGCAGGCC CC
ATACCCAGGTTTGTTTTTCTCTTTTCTCAG4870781 CCCCAGGCA GCC
AGGTACCTCCCCACCCCCAGAGGCCCGTCC5076003 CCCCAGGG GCC
CTGCTGGACAATCCCCACTGAACCCTTTGA5090167 CCTCA-GCGCC
TGCCTCGGTGGAGGTGGGAGTGTCCGGGAG5090804 CCTCAGGT GCC
TCCCTGCCGGCCGCGCCAGGGTCTGCGGAG5153579 CCGCAGG-GCC
TGACCAGGAACAGAAGCATACTGGCTAAAT5277842 CCTCAGG-GCC
GCTTGATCATGTGGATATAGTGGAGGCATA5451533 CCACAGG-GCC
CCAAGACTACCAGCCCAGAGATGATCCCAC5510620 CCACAGGG GCC
AATCCCAAGGTCCTCAAAGGACTCTCCATG5513262 CCCCAGGCC CC
CAGGGTCATACACCATGCAGGGGTAGAGGA5531772 CCGCA-GCGCC
TCTCTCTTCCTTCATCTTTTTCTCCCCCAA5567416 CCCCAGG-GCC
ATGATCCTGCAACTTTGAAGTTCTGCCTTA5938754 CCACAGGC-CC
GGGTGAACAAGGGGCAGCCCAACCTGGGGG6131306 CCCCAGG-GCC
CTTCCTCCTTCGGCCCCGGGGCTGAGCTGT6143893 CCCCAGG-GCC
GTGGATGCTCACAGTCAGCTATTGAATGGA6243279 CCACAGG-GCC
GGCTGGGCTCTCTGAAGCCTGGGTGAGACT6357848 CCCCAGGCT GCC
GAGAAGGAGCTGAGAGTTCTTCATCTTGAT6412884 CCACAGGCA GCC
CAGTCAATGATCTTAAGAACTGAATCTTCT6550222 CCACAGGCC CC
CTCCGCGGAGTCCAGGATCCAAGAAGGCTC6639193 CCGCAGGCGCC
TCCTGTTTGTCTTTTGAGCTGCTTTCAGAC6738045 CCACAGG-GCC
TTTCTGTGGGGAGCGGGTGTGGCGGCAGTC6760884 CCAA AGGCGCC
GAATTGTGGGGAGCGGGTGTGGCGGCAGTC6763592 CCAA AGGCGCC
AGGCATGCCCTCTAAATACCTAAAGCCCAG6921952 CCACAGG-GCC
AAGGGAGATCTAATACCCATCTTTTGGACC6923807 CCACAGGCA CC
GAAGAGGGGACTATAATTCAACTTTTACAG6944413 CCTCAGGT GCC
AATTTAAAAAAAAAGAAAAGAAAAAGAAAA6996682 T CCCAGGCGCC
TAGTGCTGTGTTTTCCCCAGCTCTGGATTT7037852 CCCCAGGC-CC
GGGGTACTATGGAGCAGGCCATCTAATCTC7051085 CCACAGGCGG C
CTCCCACAGGCGGCCTCTCTGCACTCCCAG7051112 CCACAGGCA CC
CCGTTGCTAGGGAACAAGAGGAGGGGCCAG7364649 CCCCAGGCC CC
GTGGGGTAAAAGTGGTGTCCTGCGTCCAGT7378190 CCACAGG-GCC
CCGGCTGTCCCCGGCCCACACAGGGTGCTG7405008 CCTCA-GCGCC
CTGGCTGTCCCCGGCCCACAAAGGGTGCTG7405220 CCTCA-GCGCC
CCGGCTGTCCCCGGCCCACACAGGGTGCTG7405432 CCTCA-GCGCC
CCGGCTGTCCCCGGCCCACACAGGGTGCTG7405644 CCTCA-GCGCC
CCGGCTGTCCCCGGCCCACACAGGGTGCTG7405856 CCTCA-GCGCC
AGAATATTCAGAAAGATATAGACTAGGATG7443395 CCGCAGGC-CC
GGGCGGTGCCGCCGCTGATGCCTGCAGCCG7468474 CCCCAGGCC CC
CAGAGGACTAGGTACAATGGATGTTAATTG7628378 CCGCAGGC-CC
AGGTTCCTGCCTGGCTACAGGAAGCAACCT7629819 CCCCAGGCT CC
TTGAAGAAGGATATACTGTGATCTAGAATA7683607 CCACAGGG GCC
GGCAGATGCAGGCAGAGCTGCTGGTGCTTT7742737 CCACAGG-GCC
GAGAGGTTCCTGTGTCTGTGCTCCAGCTCT7762089 CCCCAGGCA CC
GGTCCCATCATCTCCAGAAGAGTCTCCATG7869077 CCACAGGCA CC
CTTGTTTCCCGAGGGATTCTTACAATCTTT7957587 CCTCAGGT GCC
GAAGAGCGGACTATAATTCAGCTTTTACAG7998636 CCCCAGGT GCC
CCGGTGCCGGGAAACGAGGAAAGGGGTCAG8015124 CCCCAGGCC CC
TCCAACCTTCCAGTGAGGAGCATGGTGGAA8159902 CCTCAGGT GCC
ATAAAAAGGGTAGCATATCAGCTACTGTGC8194443 CCACA-GCGCC
AGGAACATGGTCACCTCTGCTGCCTCATTA8258984 CCTCAGG-GCC
CAGCCAAAAAACGGGGTGAGGGGCCCCCGT8262266 CCCCAGG-GCC
GTAAAACATATTACTGGATTGCCCTATAAT8265336 CCACAGG-GCC
CAGGGGTCCGCCAGGCCCTAGAGGTTTCTG8445758 CCTCAGGCT CC
CAACCCACCAAAAACCAAACAACCCCAATG8491523 CCTCAGG-GCC
CTCTTCCCTTATCTCTGGGGCTGAGTGCCG8541351 CCCCAGG-GCC
CATGTGCTGTATCCTACCTTTTTCTTTAAA8599208 CCTCAGG-GCC
GCCCACCACTCAGGCATCCAGTTCATGTGG8605836 CCACAGGCGT C
GTTATCTAACACATATTCTTAACATACTGT8753252 CCTCAGG-GCC
GGTGAAGAAGGGGCAGCCCCCAACATAAGG8815588 CCCCAGG-GCC
GGGGGGATGGACAAGGGGCAGCCCCCAAAA8889150 CCACAGG-GCC
AAAAAAAAAAAAAAAAGATGCCCCACCATA8908000 CCACAGGA GCC
AACAGAATTAGAAACAAACAGGAAAGCATT8941917 CCACAGGCA CC
GCGGGGTGTGGGTCTCCCCTTCCCCCTTTT8972678 CCCCAGG-GCC
CACGGGATCCTAAGACCTCTGGTGAGTGGA9191308 CCACA-GCGCC
CACTTTGGGCCTGTTGCTGGAACTTCTTTT9484815 CCTCAGGCT CC
CATATATCCTAACCAGAACTAAGAATATCT9498284 CCACAGGA GCC
CCAGGTATGTCAGGTTTTCAGTCTTGGACA9539854 CCTCAGGT GCC
CACACCCCATGCTGCTATTGGGTGAGCAAG9545243 CCACAGG-GCC
CCCAACCAGGTCCTGAGCTGGTTAGCCAAC9615489 CCTCA-GCGCC
TGACGTACCTAATGCCGAAAGGGACGCTGA9628590 CCACAGT CGCC
GTTCCCTAGTGGACATTAGGTGGGTGCGGT9683483 CCCCAGGCGCT
GGGTCAGGCTGTGCATTTGTGCAACACGGG9719604 CCACAGC CGCC
TGTGGTTGTACGGAAAGGGAAACTATATTA9731260 CCACAGG-GCC
TGCTCTTATGGGTATAAGGATGTCCTAATT9759203 CCACAGGCA CC
CAAACACAGCAGCAAGGAGAGCAGCAACCC9840085 CCACAGGC-CC
CAGTCAAGATGGATCACTACCCAGGCCCTT9977145 CCACAGGG GCC
GGCACCCGCTCGCCCACAGGCTCAGGCTGA10038459 CCCC-GGCGCC
GCAGATTAAGTCTCGTGACGTCAGGGAAGC10079432 CCGCAGG-GCC
TGTGCTGCTGCAGATGATGCTTCCGAGATG10156272 CCTCAGG-GCC
TCCATCACAAAGGATGACATTCTGTCCGCA10302336 CCGCAGGG GCC
GGCCGCCGTTCGAGGGCCGCGCCCGTCCGG10302967 CCTC-GGCGCC
TGCCCTAGCTACCGTGGGGACCAGCATCCG10303147 CCGCAGC CGCC
GGCGGCGGTGCCAGCGCCAGCCCAGAGCTG10303286 CCGC-GGCGCC
CCTAGGGCCACAGGAACACCCGCGTCGCTC10303621 CCTCAGGCGCA
GGCACTGGCATTTGAAACTACACAGTTCCT10342426 CCCCAGG-GCC
AACTTCCAATAAATTCTCAGCTGGGGTGGG10394793 CCTCAGGT GCC
CTAGCCCTCCCTCTGATAAAGAACCAAGCT10419021 CCCCAGGT GCC
CCCTCCCATTCTATAGGCTGCCCTCCCATT10581570 CCACAGGCT GCC
CCCTCCCATTCCACAGGCTGCCCTCCCATT10581590 CCACAGGCT GCC
CCCTCCCATTCCACAGGCTGCCCTCCCTTT10581610 CCACAGGCT GCC
TGTCCCACGATCCCCAGAGGACTCTTCATG10584792 CCACAGGT GCC
CCCAAGATCCCCAGAGGACTCTCCACACCG10585014 CT GCAGGCGCC
CTTATCTATATACTTATCTGTTACAGGTAA10588299 CCACAGG-GCC
ATTTGACAGCACAAAGCTGCCCTTAGCCAG10650304 CCTCAGG-GCC
CAAACCTGCTAGGATTTGTTGGCACAGAAT10684951 CCTCAGGA GCC
ACCAGGTCTTGATCAACCAGTTCATGCAGG10765419 CCACAGGCGCA
GACCATCACCTAGCGGGCTACTACGACTGA10808418 CCACAGGCT GCC
GCATCCCAGGCTCGAACCCAGACATGAGAG10885756 CCGCAGGC-CC
TTTCCTTTCGGCCCTGGGCTAGAGCCAGCC11004274 CCTCAGGCC CC
TTAAGCAAGTGCTCTATGACTGTGCTGTAA11016187 CCTCAGG-GCC
GTGGATGCTCACAGTCAGCTATTGAATGGA11053572 CCACAGG-GCC
CACACACACACACACACACACACCAACTCT11290345 CCACAGG-GCC
AACAAACAAACAAAAAAACCTGCCAACTCT11293235 CCACAGG-GCC
CCAACTCTCCAGCCAGGATGGACCAATGGA11293305 CCACAG GGCGCC
GTGGATGCTCACAGTCATCTATAGGATGGA11311201 CCACAGG-GCC
GTTCAGTGGCTCCTGACTCCTTACAAGGAC11335001 CCACAGG-GCC
GGTGTTCCGCTACATTGGGGCATCGAACAC11457371 CCTCAGGC-CC
TACTTTGGGTTTGTCGCTGGACCTTCTTTT11523791 CCTCAGGCT CC
CCGGCTGTCCCCGGCCCACACAGGGTGCTG11696757 CCTCA-GCGCC
CCGGCTGTCCCCGGCCCACGCAGGGTGCTG11696969 CCTCA-GCGCC
CCGGCTGTCCCCGGCCCACGCAGGGTGCTG11697181 CCTCA-GCGCC
GTGGATGCTCACAGTCAGCTATTGAATGGA11708174 CCACAGG-GCC
CCGGCTGTCCCCGGCCCACACAGGGTGCTG11853768 CCTCA-GCGCC
CTGGCTGTCCCCGGCCCACAAAGGGTGCTG11853980 CCTCA-GCGCC
GGCAAACCTCTGTGCAATTATCAAAAATGG11868051 CCTCAGGCGT C
ACAGGGGTCCACCAGCCCGAGAGGTTTGAG11875734 CCTCAGGCC CC
CCCCTGTGGGGGCTGTTGGGGCAGCAACTT12032220 CCACAGGA GCC
ATGCCCAGGTTTGTTTTTCTTTGTTCTCAG12107246 CCCCAGGCA GCC
CTGGCGGGGCATGGGTTTTTCCTCTGTCTT12112236 CCCCAGG-GCC
AGCCTCATCCTAAATGTAGTTAACACCATC12201654 CCACAGGCT GCC
GGCTTGGGACATCAACACAGACCCAAGCTG12245740 CCACAGG-GCC
GTGGATGCTCACAGTCAGCTATTGAATGGA12450221 CCACAGG-GCC
GCAAACTTTATATGCCCCAGTACAGGGGAA12522886 CCCCAGG-GCC
CCGGTGCCGGGAAACAAGAGGAGGAGCCAG12659545 CCACAGGC-CC
CCAGGTTGGTCCAGTCTTTCAGGCTTGCCC12707396 CCACAGGG GCC
TTCTGCCTATGAATGGAAGCCCCACATGGG12764923 CCCCAGGA GCC
TAATTGCCTTTTTAAGACAGAGGAAGCATT12771775 CCTCAGGCGCA
ACCAACCGAGCCAGGAGAGGCGCAGGCAGA12801251 CCTCAGGCA CC
TGAGAACTAAACTTGAGTCCCGTGGGAAAG12852880 CCTCAGGCA CC
GTCTCTCCTTGAGGTTTCACACAGAGGCTT12913707 CCTCAGGC-CC
ACAGATGTGACTAGACTAGCTGCTGGCCAG12964269 CCACAGGCGT C
GTGGATGCTCACAGTCAGCTATTGAATGGA12972909 CCACAGG-GCC
TGTGGTCCCTAAGCTGCTGATCCTAGCACT12976806 CCCCAGGG GCC
CAAAAATATTCTAACTGAACCCCCGCCTCC13000902 CCCCAGGC-CC
CTCAGAGGAGGTCTACACAGATCTGTGGGA13039472 CCCCAGGCT CC
TTGTAAGTGGAACCAGAAGGCTCAGCCTGT13048529 CCCCAGG-GCC
TCAGGGTCCCAGAAAGACCCGTTGGAACAA13054192 CCCCAGGCT GCC
AAGTACTCACAGTGTTAGCAGCAGACATTA13142450 CCACAGGC-CC
TTCCTTTGCAGTGTCGGATGGAACGCTCGT13248097 CCTCAGGCGA C
GGGATTCAGCCTGTCCTAATGGAGAACATG13303311 CCACAGGCA CC
TAAACTGTCTGACTAAAGTGGAGATGAGCA13320568 CCACAGC CGCC
GCACCACAGCCGCCATCACTCATTTCAAAT13320595 CCCCAGGC-CC
AATCTGTTCTGGGTCCATGGGCTGTCTGGA13415477 CCTCAGGC-CC
GGCTCGGGTCCCCGATTCCCGCCCCTCAGT13443022 CCGCAGGCC CC
AAGCAGGGACCGAGCCACCCCCGAGCGCGG13443101 CCGC-GGCGCC
CCCCCAGGGGCGGGGTGCGGGCACTCCAGC13443150 CCGC-GGCGCC
CCGCAGCCCGCCTCCCGCCCCCGGCCGCGG13443384 CCCCAGC GCGCC
ACCGCCCCGAAGCCACCCAAGCCCGAGGCC13443554 CCCCAGA CGCC
GGACTGTGGTCGGCAGGTGTGCTAGGAGGA13528120 CCACAGGCT GCC
CAGGTCAGATGGCTTGTCAGTGTGGAGAGG13558547 CCCCAGGCGG C
GTGACATTGCTCTGCCTGGCCCCTCATTTT13571980 CCTCAGGCT GCC
GTGTATTCCTGCAGACCCCTGGCCAACCTC13657059 CCACAGGC-CC
CGCGCTCGCGCCGTGGCCGCACCTGGTGGC13660238 CCACA-GCGCC
TTTCATTCTTCCGTGTGTGGATATCCAGAG13741885 CCCCA-GCGCC
TGTCAGGGAAGGGAAGCTTATTGGCTAAAC13746188 CCTCAGG-GCC
TTGGTGTGTTTGAGGGAATAGGACTGAAGC13756690 CCTCAGG-GCC
ATCCAATTAGCAAGGCAGCAGTTGTAGCTT13773330 CCTCAGG-GCC
CATATAAACACTCAGGGAGGGGAAAGGTTC13779512 CCTCAGGC-CC
CCGGCTGTCCCCGGCCCACACAGGGTGCTG13807232 CCTCA-GCGCC
CTGGCTGTCCCCGGCCCACAAAGGGTGCTG13807444 CCTCA-GCGCC
GGGGCATGGCCAGTTCTCTTACTCTCATGA13843493 CCCCAGG-GCC
TCTCCATTTTATTCTGTCATGGACCCTAAC13893885 CCACAGGG GCC
TGCATATAAACTCAGAGACTGTGGCAGCAT13903797 CCACAGG-GCC
GTTCTGCTCCTGTGAGGGGGCGTTCCTTAC13917024 CCGCAGGG GCC
GTGGGGCAGACACTTTACAGACTGAGCCAG13925039 CCCCAGGCT CC
TTTCTAATGGATTTTTCATGCATTCAGAAA13932117 CCCCAGGCA CC
TGCAAACTTTATATGCCCCAGTATAGGGAA13984201 CCCCAGG-GCC
TAGTACTAGTGGCTATCTATAATGTTCCAT14018015 CCCCAGG-GCC
CTTCGATGACAAAGCCAGCTTTCCTGAACA14067750 CCTCAGGCA GCC
GGCATTCCCCTACATTGGGGTATCAAATAC14091247 CCTCAGGC-CC
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/1/CCNCAGGCGCCen |
db : mm39 |
k : 1 |
strand : CCNCAGGCGCC |
format : html |
download :
0.006 | 0.006 | search_start;
0.305 | 0.299 | search_plus_done; http://172.18.8.138:28851/match?q=CCNCAGGCGCC&k=1&no_gap=0&offset=0&limit=200
0.563 | 0.258 | search_minus_done; http://172.18.8.138:28851/match?q=GGCGCCTGNGG&k=1&no_gap=0&offset=0&limit=0
0.563 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.