CRISPRdirect — Rational design of CRISPR/Cas target. 

0 mismatch/gap   |   ≤1 mismatch/gap   |   ≤2 mismatches/gaps   |   more:

Search for: both strand plus strand minus strand

2025-06-14 13:20:23, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:3567935-3567945
CTTAAGGCTTATGTCCTTGGCTGCTTATGC3567935CCAACAATGTGGCCAGGTTAACCTTATAGAATATATAAAGC
chr1:4240520-4240530
TTGGTCCAGTGACACCTTCATATCCATACA4240520CCCACAATGTGACATTGGCCTGAGTACCTGTGTTTCCAGTC
chr1:4240931-4240941
AGTGCTACAACACAGGAGGGCACGCTAGAG4240931CCAACAATGTGAGCTTATAAATTTTTCATAAAGTTGCTTGT
chr1:8067485-8067495
AAGGTCTTACCACAGGGAATGTCCAATAGT8067485CCTACAATGTGCCAACTTTATGTACAAGAAGCTCTTTTGCC
chr1:9264163-9264173
TATACATATATAAAAAATTAATGAAATTAC9264163CCTACAATGTGAGCACAATTCTCCAATTAGACGCTGTATGC
chr1:12948253-12948263
CTGCACCACCTCCCTGCTCCCTCCCTCTAA12948253CCCACAATGTGTTCTTCAGGCTTCCAACCCTGTCCTTTCCT
chr1:14544378-14544388
CATAGGGCATCACAGATAAAGTCCAGACAG14544378CCTACAATGTGGGACTCTGAACACATTTATCACCATCACCA
chr1:14942124-14942134
TAACATGTCAACCTGCATACTTCAGTGTTC14942124CCCACAATGTGAGGCATGGTGCTTCTTCCACATGGTGCTCA
chr1:15088700-15088710
GTACTCTTGGTGACCGGCTCACAACCAACT15088700CCTACAATGTGTGGGTTGCTCTTTCGAGTACTACAGCTGTC
chr1:15666224-15666234
ACACACACACACACACATACACACGCACAC15666224CCCACAATGTGGGCATTTTTTCCTAAGCCCAATGCTATGTA
chr1:15874677-15874687
GGGGTAATATGCCCTCATGGTCATGAAAGA15874677CCCACAATGTGAGGGCTCCCCCACGTTCTGACTCAGGAGAG
chr1:16650207-16650217
GTCTAGAGACTGTTGTTCTGATTATTCTGG16650207CCAACAATGTGGCTATTTTCTGCTCTTGTCCAAAAACAAAA
chr1:16811996-16812006
AAGGTCTTACCACAGGGAATGTCCAATAGT16811996CCTACAATGTGCCAACTTTATGTGCAAGAAGCTCTTTTGCC
chr1:17735383-17735393
GAAGTAGAATTCTGCTCAACTGGCTTGGCT17735383CCAACAATGTGTAATATAGCATACTGTAATTCTCCTCACTT
chr1:18626692-18626702
CCCAAGACCACCAGTGTAGGGATGGCACCA18626692CCAACAATGTGATGGGAACTCTGCCATCAATTCTAATTAAT
chr1:19772959-19772969
GGGTAAAGTATCTGGTGATAGAGTTGGTGG19772959CCAACAATGTGAATCCTCTCATATGTTATATCCGCCAGTTG
chr1:22274260-22274270
CATGCAAGCAAACCCATGACTGTTATTATA22274260CCAACAATGTGACCATTTGAAGAAAACAGACTCCACCAAAA
chr1:22888411-22888421
GTACCAATAGCCAGTTATCTGAGCCTAATC22888411CCCACAATGTGGGGATGTGGGAAGGAGGCTTGTTCTAAGAA
chr1:23341864-23341874
AAGGTCTTACCACAGGGGAGGTCCAATAGT23341864CCTACAATGTGCCAGCTTTATGTGCAAAAAGCTCTTTTGCC
chr1:24908184-24908194
CTAAGGTAAGACCATGTAGAAAAAGCAAGC24908184CCTACAATGTGCCTCTTGTGGTTAATAGAGAGATCATGTAT
chr1:25496123-25496133
TATGAATTTTGAAAGTCCATCATCCCCATT25496123CCAACAATGTGTATAAAATCTTCAATCACCTGCATTAACTC
chr1:25710073-25710083
TTTGTGCCATGGGATCATGAGGTGGAAAAG25710073CCAACAATGTGAGAGATCTCAGTATGCACTGAGTATGTCCT
chr1:27041416-27041426
TGAGATAATTATAAGAGTTGTCTCAAGATA27041416CCAACAATGTGTTCTAGATGCAGTGAGAGCTTAAGAAATAT
chr1:28988795-28988805
TGATATGGATAGTGAAGAAAGGATGGCAAG28988795CCAACAATGTGTTCATAATCTTAATGGGAAGCAAGGGTGAT
chr1:29033404-29033414
TCCACCTACATGATGTTACGGTAAAAAGTT29033404CCAACAATGTGTTAATATTATCTCTCCAAAAACTATTAGTT
chr1:30821953-30821963
TTCTATATGGGTTGCTGATGAACACCAGCT30821953CCAACAATGTGTTCAGAGGTCCCAGGAAGTGATGTGGAGTT
chr1:31593378-31593388
GATAAAGGTTCATAGTAACAAACCTTCCTC31593378CCAACAATGTGGTTAGGATTTAAAACTCTTTATTTCCATAT
chr1:31969473-31969483
ATGAACATCGTGTAGCATGTGTCTGAAAGA31969473CCCACAATGTGAGGACTCCCCCACCTTCTGACTCAGGAGAG
chr1:34579684-34579694
CCCAGGACTGCCATTCCAGGGATGGCACCA34579684CCCACAATGTGCCCTCCTCCCTTGATCACTAATTAAGAAAA
chr1:35256472-35256482
GGCCAGAGGTGATCTGCTTGTTCTGAAAGG35256472CCCACAATGTGAGGACTCCCCCACGGTCTGACTCAAGAGAG
chr1:35831089-35831099
AAGGTCTTACCACAGGGAATGTCCAATAGT35831089CCTACAATGTGCCAACTTTATGTGCAAGAAGCTCTTTTGCC
chr1:37638510-37638520
GTTTTAAGATTCTACACACTAACACTAGTG37638510CCTACAATGTGTGGTCAATCACAACCAGAAGAGCGGTCTTG
chr1:39334205-39334215
CTTCTGCTTTCTCCCCTTCGTGGTCCAAAC39334205CCCACAATGTGGCCCCTTGGATGACTTATAGTTTTCACAGC
chr1:39495840-39495850
CAAGAACAAAGTCATCCTTGCCCCAGGATT39495840CCTACAATGTGAGGCCAACACACCACCCCCTACACTACTCT
chr1:40092262-40092272
CATATGTTAAGTCGTTCAGTAGGGTGGCTG40092262CCCACAATGTGTACATATTTTAGAATTCCCTGTTCTTCACT
chr1:41475918-41475928
CCCAGAACCATCAGCCCAGGGATGGCACCA41475918CCCACAATGTGCTAGGCCCTCCCCCATTGATCACTAATTGC
chr1:42645655-42645665
TGTTGTTTCATAAGCTTTTGATGGAGATCG42645655CCAACAATGTGTGCTTGATTACGTGACAAAGAAATGATTCC
chr1:42713012-42713022
TTTTCTCACTTCTTCCAGCTGAAAACAAAA42713012CCCACAATGTGAGTTACAGTGTGTGTGTGTGTGTGTGTGTG
chr1:43633662-43633672
CCTTTGCTGGAAACAGGTTCTACTAGGTGA43633662CCCACAATGTGTTCTTTCAGCTTTCCTGGGAATCTCATATG
chr1:43797866-43797876
TCTACTAAACAGTGTTCATCAGGAAACTGA43797866CCTACAATGTGCCTACATCCCGGTGATCTCAGATACCAAGA
chr1:45954694-45954704
GATTTGCTGAGTAGATAAGAGCCTATAGGC45954694CCTACAATGTGACACCAGCTTCTAACCAGTAGAGTTCAGAC
chr1:46019343-46019353
GTTCTCTCAACACATTAAGTCCTGGATACC46019343CCAACAATGTGGAAAAGCAAGATTCTGTTTTAAAATCACAT
chr1:46827866-46827876
GCAGGCAAAGTCCCAGCACTGTCAGTGGCC46827866CCCACAATGTGATTTTTAGGTCCAGGTCGCAGCACGATCAA
chr1:47587062-47587072
CAATTCTCATGTGCTTTAAATATGTGGGAG47587062CCGACAATGTGTTCATTTACTATATTCAATTGAACATAAAT
chr1:48129879-48129889
AAGGTCTTACCACAGGGGATGTCCAATAGT48129879CCTACAATGTGCCAGCTTTATGTGCAAAAAGCTCTTTTGCC
chr1:48592440-48592450
ATTTACTCACTGTACCAGCCTATTATCAGG48592440CCAACAATGTGTCATATGTCAAGTTAGTCATGCTCAGAATT
chr1:49942252-49942262
TACCAAGGAAAGCAGTAAGTCCTTGGAGCT49942252CCTACAATGTGCTATGGGGTTATTGGCATTTTTTTACTGTT
chr1:50953821-50953831
GAATAGTCATAGATAATATCTATGCTCTTC50953821CCAACAATGTGATACCCTAATATATGTAAATATATAGATAT
chr1:51570752-51570762
CTGACCTTATCCTGCCTTCCTGCAAGCATG51570752CCAACAATGTGCTTTTGATAACATCCTGCATTTCTGAGTTT
chr1:52643793-52643803
ACTGCATAACACAAATGAAAGAATGCATGT52643793CCTACAATGTGCTGGGGTGGTGAGGTAGTTTGAGTATGACT
chr1:55886638-55886648
TGATCCTAAGATCCTGGGTGTGCTAGGGCA55886638CCTACAATGTGGTGAGTCCTCTGGGGAACTTGGGACCCTCC
chr1:56814896-56814906
AAGGTCTTACCACAGGGAATGTCCAATAGT56814896CCTACAATGTGTCAACTTTATGTACAAGAAGCTCTTTTGCC
chr1:57602732-57602742
CCCTTCCTCTCTCTTCTCTCCAGCTTCCCA57602732CCCACAATGTGGTGCACCCCTTTGCTTCTCTTCTCCACTCT
chr1:58640765-58640775
TAGGCACAATGCATCTTAGTATGTAATAGA58640765CCTACAATGTGTATGGGACAAATCCACAGAATTAAGGTAAC
chr1:64528155-64528165
CACACAGCAGTCTCTGTGACTTGAAATTTT64528155CCCACAATGTGCCAGCAACCCCAGAGGATGCCAGGGCCATC
chr1:64647296-64647306
ACTTTCCGATCCGTGATAGTCACCTGAGCA64647296CCTACAATGTGGAACAAAAAGAAAGGAAGGTGAACATCGTA
chr1:65168172-65168182
GCATGTGCCAGCTTTCTCTCAGCATCCCTA65168172CCCACAATGTGGTATAATTTCTAAAGATATACCACATTTGT
chr1:65182685-65182695
ATATACATATAATGAATATGTATTGAAAGA65182685CCCACAATGTGAGGACTCCCCCACGTTCTGACTCAGGAGAG
chr1:65434948-65434958
TTTACAGGATGCTTGGCTGGTACCGTTAGA65434948CCCACAATGTGAGGACTCCCCCACGTTCTGACTCAGGAGAG
chr1:65951867-65951877
TCTATATGCATAGCCACAGACAATGAAAGA65951867CCCACAATGTGAAAACTCCCCCACATTCTGACTCAGGAGAG
chr1:68970653-68970663
TCTGCTACATATCCAGCTGGAGCCATGAGT68970653CCAACAATGTGTACTCTTTGGTTGGTGGTTTAGTCCCTGGG
chr1:70111133-70111143
ACCAGCTTGGTGGTAAAAAAGAGTCGTTAA70111133CCTACAATGTGAAAATGTGTTCTATGAAAATGATGAAAGAA
chr1:76315297-76315307
CCTCTAAGATTTTATAGGGTAGAAGCTTGG76315297CCCACAATGTGCATTGCTTTTCTTCCATAGAATTCTTCCCC
chr1:77060244-77060254
TTTTTTAAACCGCTGACTCCTCCCTAGGTT77060244CCAACAATGTGTCTTTACTCACATAGGCAATTATCCCAGAA
chr1:77203097-77203107
GTGTTGCAGCAAAATGTAATTTTTTTCCCT77203097CCGACAATGTGTTTGTGGTTCTTAAGTTATCTTGATGGCCA
chr1:77250172-77250182
ATACAGCAAATCCGTCTTAACTACAAGGTT77250172CCCACAATGTGGGCACCTTGCTGTGTGCAAGAGCTATATAG
chr1:82058064-82058074
TGGCGTAACACCCAGTGGATACAACAATGG82058064CCAACAATGTGACTTCAGAAAAATGAGCCACAGATTTGTCT
chr1:83018741-83018751
CCTCTTAGTGTCAGTAGTCCATAATATGGC83018741CCTACAATGTGCATAGAACACCTATTTACATAGTGTGGATA
chr1:83822097-83822107
GAATGCTAAAGAAATCCTCCTGGTGAAAGA83822097CCTACAATGTGAGGGCTCCCCCACGTTCTGACTCAGGAGAG
chr1:84309878-84309888
TCTCATAACCCGAATACTCATACTGAAAGA84309878CCCACAATGTGAGGGCTCCCCCACGTTCTGACTCAGGAGAG
chr1:85590772-85590782
TCTTAGTATAGCACCTCATGCTCATAGAAA85590772CCAACAATGTGTGAGTTAGCTCTTCAACCCCGTCCTGCCCA
chr1:88298749-88298759
GAAGGCCTGCAAAAGACCTGTCTGTCAATT88298749CCCACAATGTGTTTCATTGAGTCCAAGTGGCCAGTTCAGGC
chr1:90624775-90624785
AATGGAATAATCTTATGGTTGAGGGGGGTC90624775CCCACAATGTGAGGAACTGCCTTGAGTGGTTGCAGCATTAG
chr1:91330549-91330559
CAAATGCAGAATGGTACATTCAGTTGCATA91330549CCTACAATGTGGATCAACTTTGCTGTATGCTTGAGCAACAG
chr1:91522880-91522890
TGCTCCTCCACCAGCCAAGGGATGACATCA91522880CCTACAATGTGCTGGGCCCTCCCCCATCAATTATTAAGAAA
chr1:92780943-92780953
GAGGTCAGAGACACTGGAGCCCAGCTTTGC92780943CCTACAATGTGCCCCCTCTCCCCATCTCTGCCTTCACAAAG
chr1:93889140-93889150
GGGTATCTGTCCCAGAGTGGGAATGAAAGA93889140CCCACAATGTGAGGACTCCCTCACATTCTGACTCAGGAGAG
chr1:94881538-94881548
CCCCCGACCACCAGCTCAGGGATGTCACGA94881538CCCACAATGTGCTGGGCCTTCCTCTGTCAACATCTAGTTGA
chr1:95022618-95022628
CTTACATTAATATGTAAGATATTCCTTATT95022618CCCACAATGTGTGAATGTCTTAAATATATATCTTATTATAT
chr1:95578740-95578750
GAAATCAAATGGATGCTACACTGTGACACT95578740CCAACAATGTGATTAACTCTGTAAGACCTGAACACAGACAT
chr1:97234852-97234862
TAAAGTGCTTATGTTTTCAGTTCTAGAATT97234852CCCACAATGTGGGTTTTTCTTTTATTGATTCTATTTCTACT
chr1:98287953-98287963
GTGATGACTTGGTTATAATTCTATATTGTT98287953CCCACAATGTGGTTAGTATACTTATTGTTAAAGTATACTAA
chr1:100074266-100074276
TGTGGAAGTCAGAGCACTATTGAGTTTCAG100074266CCCACAATGTGACATTTTTCAGACACCATGCCAGTCAAGCT
chr1:100581934-100581944
CAGAGTACTGTGGGACAATGGACTGAAAGA100581934CCCACAATGTGAGGACAATCCCACGTTCTGACTCAGGAGAG
chr1:100768183-100768193
TCTGCTACATATGCAGCTAGAGCCATGAGA100768183CCTACAATGTGTTTTCTTTCTTTCTTTTTTTTTATTATCTG
chr1:103518192-103518202
AAGGTCTTACCACAGGGGATGTCCAATAGT103518192CCTACAATGTGCCAGCTTTATATGCAAGAAGCTCTTTTGCC
chr1:104326718-104326728
CACAGACTTCAACTAATTAATACTGAAAGA104326718CCCACAATGTGAGGATTCCCCCACGTTCTGACTCAGGAGAG
chr1:106063264-106063274
CCTGCATCCAGGCCAGCTCCAAAACAGTTA106063264CCCACAATGTGCTCAGGCCCAGACACACAGACTGCTCCATC
chr1:106537347-106537357
ATTCTAGTCAGTACACACAGTTTTGGATAG106537347CCTACAATGTGGGCCCTACATGAAAGGATGTCAGGGAGAAG
chr1:106918233-106918243
TGCTGTCTATAACTTTGTCAAGTGGAAACT106918233CCCACAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
chr1:109544669-109544679
AAGGTCTTACCACAGGGAATGTCCAATAGT109544669CCTACAATGTGCCAACTTTATGTGCAAGAAGCTCTTTTGCC
chr1:110258437-110258447
AAGGTCTTACCACAGGGGATGTCCAATAGT110258437CCTACAATGTGCCAGCTTTATATACAAAAAGCTCTTTTGCC
chr1:110477823-110477833
TCTGCTACATATGCAGCTGGTGCCATGATT110477823CCCACAATGTGTATTCTTTGGTTGGTGGTTTAGTCCTTGGA
chr1:111643105-111643115
CCAGAGTGGTTGTACAAGCTTGCAATCCCA111643105CCAACAATGTGGGATTTCTCCACATCCTCCCTAGCATCTGC
chr1:112422848-112422858
TCTGCTACAAATGCAGTTAGAGCCATGATT112422848CCCACAATGTGTTTTCTTTGATTGGTGTTTTAGTCCCAGGG
chr1:112860746-112860756
AAGGTCTTACCACAGGGAATGTCCAATAGT112860746CCTACAATGTGCCAACTTTATGTGCAAGAAGCTCTTTTGCC
chr1:114114654-114114664
AAGGTCTTACCACAGGGGATGTCCAATAGT114114654CCTACAATGTGCCAGCTTTATATGCAAGAAGCTCTTTTGCC
chr1:114820919-114820929
AACACTTTATAATCCATGCAATGAAGGACT114820919CCAACAATGTGAAGTGAAGTTCACAAAAAGATGTAATTATA
chr1:115513838-115513848
TCTGCTACACACTCAGCTGAAGCCATGAGT115513838CCCACAATGTGTTTTCCTTGGTTGGTAGTTTAGTTTCTGGG
chr1:115636236-115636246
TCTGCTACATATGCAGCTAGAGTCATGAAT115636236CCCACAATGTGTTTTCTTTGTTTGGTGGTTTAGTCCCAGGG
chr1:115666165-115666175
AGTCCATCTAAAAAGACAGGAGATTTTATA115666165CCCACAATGTGCAGAGAATTATAAGCAACCTTGTTCATTCT
chr1:116137396-116137406
TTTTGTCTAATATCTACTTATCAGTGAGTA116137396CCTACAATGTGTGTTCTTTTGTGACTGAGTTACCTCATTCA
chr1:116642609-116642619
TCTAGAAGAGCTGGCAGAGCACAGAATGAA116642609CCTACAATGTGTTTATAGTGATGCCCCTCCACACCTTGAAT
chr1:117463314-117463324
GGGGCACTAACCCAACCACAAAAACTTTGA117463314CCTACAATGTGTCCTTCCATAATGATATACTGGGATAAAAT
chr1:118085838-118085848
CCTTCACCAAAGCCCTAGTTAGTCCTTGAG118085838CCTACAATGTGCTTGGAATTCAGTAAGAATATTACCTATTC
chr1:119320680-119320690
TTGCAGAGGACTTTGGTTTGGTCCCAAGCC119320680CCCACAATGTGGCTCACAGTTCTGGTTCCAGGGGCTTTCAT
chr1:120175633-120175643
TTTGAAGAGTTACAAGTTTGGTTCCTAGCA120175633CCCACAATGTGTGGCCCACAGCCTGTAAGTTCAACTCAAAG
chr1:121562620-121562630
GATTTCCTAACCTGACTTCCCTTTGAAAGA121562620CCCACAATGTGAGGACTCCCCCACGTTCTGACTTAGGAGAG
chr1:121930956-121930966
CCCTCCTGCCTTCAGGTGTGTGTCATCATG121930956CCCACAATGTGCTAGGGATGGAACCCAGGGCTTCCTGCATA
chr1:122149878-122149888
CCACCATGCCTGGAGTAATTCAGCACTAGC122149878CCTACAATGTGTACTTTAAAGAACACAGAGAGAGCATCGTA
chr1:123086714-123086724
GCCAGTTCCTTCCTTTGCAAATATTTAGAA123086714CCTACAATGTGCTGATTTTTGGGTCTTTCTCTTAAGTTTTC
chr1:125248132-125248142
AAGGTCTTACCACAGGGAATGTCCAATAGT125248132CCTACAATGTGCCAACTTTATGTGCAAGAAGCTCTTTTGCC
chr1:126353822-126353832
AAGGTCTTACCACAGGGAATGTCCAATAGT126353822CCTACAATGTGCCAACTTTATGTGCAAGAAGCTCTTTTGCC
chr1:126868555-126868565
AAGATCTTACCACAGGGAATGTCCAATAGT126868555CCTACAATGTGCCAGCTTTATATACAAAAAGCTCTTTTGCC
chr1:127596632-127596642
ACAGCCTGTGAACTGAGATGTTTTGTCTGG127596632CCCACAATGTGCTTTCACAGTTAGAAGATTGCACGTTAAAA
chr1:129342224-129342234
CTCCCACCTTGCCTGAGCCAACTCAGAACC129342224CCCACAATGTGACCAAGGACAAGCATTTTTAAAAGCAGCTG
chr1:129795392-129795402
ACATGATTTTTGTGAGCATGAACTGGGGAA129795392CCTACAATGTGACCCCCTACTTTAGGAAACTATGTTCTGTA
chr1:131530606-131530616
TGGCCCAGCAGTGTAGAGACAAAACCCTGT131530606CCTACAATGTGCTCTCAGAAAAATAAAAGCTCAAGGACAAA
chr1:132091214-132091224
ATAGGCAGAGAGGAGTGGGCACCTTCAGCA132091214CCTACAATGTGACAGAACCCAAGTTCTTTCTCATGTGGGGT
chr1:132558900-132558910
GTCAGAAATGATAAGGGGATAAAACTAAAC132558900CCCACAATGTGAAAGATAAATCTGCAGTTTGTAGACACAGC
chr1:132741557-132741567
TAAATTGCTGGTGCCAGTTTATCCACAACT132741557CCCACAATGTGCAGTCCTGCTCTCTCCAGGACCAGCAATTC
chr1:133218194-133218204
CCACATTTATGCCATTGGTGGCAAGTTTAT133218194CCAACAATGTGCCCCTTGCTTCCTTCTGCAACTTTGCTTGA
chr1:133481148-133481158
CCTAGGACCACCAGCCCAGGGATGGCAACA133481148CCCACAATGTGCTAAGCCTTCCCTCATCAATCTCTAATTAA
chr1:134580784-134580794
AAATATATGTATATACATGTGTGTGTGTAT134580784CCTACAATGTGCGATGCTCAGATAAAGACCCTTAGCCCTTA
chr1:135221343-135221353
TTGAGTGTTTTTTGCAGTGCTTCCTGGACC135221343CCAACAATGTGAATTTTGTTTTTGATCATTGCTTTATGGTT
chr1:135332793-135332803
ACAGTGTTTTTATGAATTCTTTGGGAACTT135332793CCTACAATGTGTTCTGAACACATTGGCTCTGAGCACATGGC
chr1:136218378-136218388
AACCCTTCCACGGGGTGTTGGTTCTCTCCC136218378CCAACAATGTGAGTCCTGGGACAAAATTCAAGGTGTTGGGT
chr1:137140403-137140413
CTTTCATATGAAGGAATTTCTAATGCCTTC137140403CCTACAATGTGTGTCCCTGGCCATAAACTCAGTTTTCACTT
chr1:138482278-138482288
TTAAAAGATGTTATATGTATGATTGTTTTG138482278CCTACAATGTGCGTTGTGTGAATGTCTGATGCTCATGGAGG
chr1:138689542-138689552
GGAGGCCTTCATGCTCAGAGCCCAACTGAC138689542CCCACAATGTGTGTGCATGTCGGCTTCCTGCCTGGGACTGG
chr1:139654242-139654252
AAGGTCTTACCACAGGGGATGTCCAATAGT139654242CCTACAATGTGCCAGCTTTATATGCAAGAAGCTCTTTTGCC
chr1:139687102-139687112
TTTGCTACATATGCAGCTAAAGCAATGTGT139687102CCCACAATGTGTTTTCTTTGGTTGGTAGTTTAGACTCAGGG
chr1:139755944-139755954
AGGACACCAAACCAGACATAAAACCTTCAA139755944CCTACAATGTGTCTTGCCAGAATGATGTGCTGGGGTAAAGG
chr1:139848855-139848865
AGGACACCAAACCAGACATAAAACCTTCAA139848855CCTACAATGTGTCTTGCCAGAATGATGTGCTGGGGTAAAGG
chr1:140069304-140069314
AGGACACCAAACCAGACATAAAACCTTCAA140069304CCTACAATGTGTCTTGCCAGAATGATGTGCTGGGGTAAAGG
chr1:142475297-142475307
AAGAATGCATTGCTAGAAATTTACTATGAA142475297CCTACAATGTGGGGAATATTGGTCTACATGCTGGTAATAGA
chr1:144609317-144609327
GCCCTTGTTTCTTCCTTTTCTTTGTATTTT144609317CCAACAATGTGTAACAGCCAACTCTCATGCTCCTGTGTATA
chr1:145539277-145539287
GGCTTGTATACTCAATGTTTTAGCACAGAC145539277CCAACAATGTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
chr1:148299399-148299409
CCAAGGCCAGTGAGAAGAAAAGTATCATTG148299399CCAACAATGTGCCAATGCCAAACAGAGATCTTACCTTACAT
chr1:149460846-149460856
AAGGTCTTACCACAGGGAATGTCCAATAGT149460846CCTACAATGTGCCAACTTTATGTGCAAGAAGCTCTTTTGCC
chr1:150310489-150310499
CAACCAAAGTTCTATAGAAAGACCATGTCC150310489CCAACAATGTGTCTTAGTCAGGGTTTCTACTCCTGCGGGGT
chr1:150355225-150355235
GTTTTATTTGTAGTTATAGTTAGTGAAAGA150355225CCCACAATGTGAGGACTCCCCCACGTTCTGACTCAGGAGAG
chr1:150555328-150555338
TTAATCTTTACATCTTCCAATGTGTTCTCA150555328CCCACAATGTGAGGAGGAACTAGGGCAAACACAAAAGGACA
chr1:152540292-152540302
AAGGTCTTACCACAGGGGATGTCCAATAGT152540292CCTACAATGTGCCAGCTTTATGTGCAAAAAGCTCTTTTGCC
chr1:152783913-152783923
CCAAGGACCACCATCACAGGTATGGCCCCA152783913CCCACAATGTGCCCAACAGTCACTAAGTAAGAAAATGCACA
chr1:156588660-156588670
TCTTAAGCTGTTTGGCGGCCAGTAAAATTC156588660CCCACAATGTGCTTTGGGGGAAAAAAATACCCAATCATCAA
chr1:158502660-158502670
GATTTAGAGTTGATCAGTTAACAGCTCCTT158502660CCTACAATGTGTCTAAATCTTTCACCCTGTACTTTAAAGTT
chr1:158848977-158848987
TGAAGAATTTGATTATCTACCAACAGTTCA158848977CCAACAATGTGGAGGTATATCTCAGAAAGTAAACATGGGGT
chr1:159966317-159966327
AGGATGTGCACAGTTCAATATGCATTTAAA159966317CCTACAATGTGTTCAAATTCCATTCTGGTTGATATTTGACC
chr1:161128342-161128352
ACAGATAAAAACAAACTAGACAAACTCAGA161128342CCAACAATGTGCCATCGGAGATCACTGCTGACAAAGGAATG
chr1:161575657-161575667
CTTCACCTCTTCTCCCCTCAGATTGTCAGA161575657CCCACAATGTGTGTTGTGGTATGACTGATTATCCTTTTACA
chr1:161957465-161957475
GGATATCAAGGAAGAATTCAAACCCTGGCA161957465CCAACAATGTGGAAATCAGAAGAGGGGTATTGGGATCAAAA
chr1:162272879-162272889
CCTTCCACACCTCGTGTCAGCCTTGTTACC162272879CCAACAATGTGTACCAGAAAGGGGTAATTTCACTCCATAGA
chr1:163873423-163873433
GGCTATGACCAGGGCTACTTTCCACCTTAC163873423CCAACAATGTGCTGTTGTTTCTACAGGGCAGTCTTGATTAG
chr1:164119266-164119276
ACCCCAGTGTTTCTGAAGGCCTCTTGTGTA164119266CCCACAATGTGACCATAAAGGGACTGCAAATCCCTTTTTCA
chr1:166608931-166608941
GTCAGAGGACAACTGGTAAGAGTCAGTTCT166608931CCCACAATGTGAGTCTTGGAGATCAAACTCAGATGATGAGT
chr1:168307468-168307478
TAGTTGGCTGGGATTCTGATTCTAATTTTT168307468CCCACAATGTGCTGTGTGGCTGCAAGTTAGGCACCCTACCT
chr1:168752550-168752560
ATGCAATAAGCAATAGATGTTTATTGTTTG168752550CCAACAATGTGATATAAATGTCCAGGTGCAGAGTAACATAG
chr1:169923100-169923110
GGACTGACTACCTACTCAATGGTGGCACCA169923100CCCACAATGTGCTGGGTCCTCCCATGTCAATAATGAACCAA
chr1:170860793-170860803
GTAAAATGTCTTCTGTGATTGTTTTTCTCA170860793CCTACAATGTGCCAGTAGGTGCTGAGAAAGTCACGTGAACA
chr1:171293317-171293327
GGATAAAACAGCTGTAACTGTAGTTCTAGA171293317CCCACAATGTGGGGCCGGTAATATGGCTAAGCCCCGCTCCC
chr1:171296976-171296986
TCAGTTAGCAAGCTAGTCTTCCCTTCTTTG171296976CCAACAATGTGTGGAATGTACCTGGTTCCTCATACAAGAGG
chr1:172364775-172364785
ATAGGTGGTCAGTCAGAGGTTTTCCTAGCT172364775CCCACAATGTGAGGGCCAATGTGAAGACTTAGGTTGAAGAC
chr1:172451767-172451777
TGAGATCACAGGCTGGACAGATGGTTCATG172451767CCAACAATGTGATTTATGGTGAACACCTGTTCTCTTATATT
chr1:174348467-174348477
TCCCTTGCTTCTCTAATTGGCATTGAAAGA174348467CCCACAATGTGAGGACTCCCCCACGTTCTGACTCAGGAGAG
chr1:174750647-174750657
GCCTGCTTTCTTTTCATATTTAAATCCATT174750647CCAACAATGTGGAACTACAAAGCAGTTACTCAGAAGGGGCC
chr1:176599350-176599360
CCAAAAAGTACTATGAAAAGAAAAAAAAAC176599350CCAACAATGTGCTTAATTAGTGGAATCTCCAACACTGATAA
chr1:176854432-176854442
CCTTGGAAACTGGAGTTACACATTATAAGC176854432CCCACAATGTGAGGCCAGGAACTGAACCAAGGTTCCCTATA
chr1:177990780-177990790
GGAATGAATTAGCAGGGAAATCATGATCAC177990780CCTACAATGTGCAAGGGCTGATCAATGATCGTTGAGTCTCT
chr1:178005209-178005219
AAGGTCTTACCACAGGGAATGTCCAATAGT178005209CCTACAATGTGCCAACTTTATGTGCAAGAAGCTCTTTTGCC
chr1:180850881-180850891
AAGTGTTCTAAAATGGAGGCATTTATCCAA180850881CCTACAATGTGGGTTCTATGAAGAAGGGAACTGGGGTCTAT
chr1:181047177-181047187
GTTTGTGTGTGGCTAAGCTGGGTACTCAAC181047177CCTACAATGTGCTACTTTTCAGAGATAGCTGTTGGTAGACT
chr1:181067625-181067635
TGGTTGCTTCCAGGAATGAGAGAATCCTCA181067625CCTACAATGTGGCCTCGCTCCTTAATTTAAAACTATTGGTT
chr1:182054861-182054871
TTCATCCTCAAGGGCTTCCAGGGCCTGCCG182054861CCAACAATGTGGACTTAAATCTAGAATCGTGTCTTTGAGCA
chr1:182501792-182501802
GTGGAAGCATAATTGATATACAAAAGATCA182501792CCTACAATGTGTGTGTGCAATCAGATGACTCGTGTTATTAC
chr1:183797513-183797523
CATCATTCCTCTTCCTCTACTCCAACCACG183797513CCAACAATGTGTTAATGATGCTTTTATTGGGGTGTGTGTGT
chr1:187327483-187327493
TAGAATCCTAATGAGATCACCATCAATCTA187327483CCTACAATGTGTCCAACATTCACAAACTTTGCTCATCCTGT
chr1:191841317-191841327
AAGGTCTTACCACAGGGAATGTCCAATAGT191841317CCTACAATGTGCCAGCTTTATGTGCAAAAAGCTCTTTTGCC
chr1:192030196-192030206
TTCTTCTGACACTGGCTTTTTGGAACCAAC192030196CCCACAATGTGACATTTATCCAAATGTGGCTCTCCCAGCCT
chr1:193736348-193736358
CAAGACTGTATCAACCACTCCTCCCCCATA193736348CCAACAATGTGATTTCATAGTCAACTCATCAGCTAATCAGA
chr2:5487724-5487734
AATGGCGGATACATGGCCTTGGTCCCCATA5487724CCCACAATGTGCATGTTGAACTGGGGAGACAGTCAGAAAGC
chr2:5692390-5692400
AAGGTCTTACCACAGGGAATGTCCAATAGT5692390CCTACAATGTGCCAACTTTATGTGCAAGAAGCTCTTTTGCC
chr2:6553841-6553851
CCATATATTATTTAATAAAATGTACTGCCT6553841CCCACAATGTGAACTATTAAATTGTACGAGTGATATTTGCA
chr2:7410592-7410602
AAGGTCTTACCACAGGGGATGTCCAATAGT7410592CCTACAATGTGCCAGCTTTATGTGCAAAAAGCTCTTTTGCC
chr2:9820902-9820912
CGCAGGTATAGCTGGATGGGAGAGCACCTG9820902CCTACAATGTGTATGGCCCTGGGTTGGATCTCACTTTTCCC
chr2:9911905-9911915
TATGATGTATATGAACAATTGTGAGTTGCA9911905CCCACAATGTGCAATGGCACTATTTCACATTGGTAATATTT
chr2:13356182-13356192
GATCAATTTTATTATATTTAGTGGAATAAA13356182CCCACAATGTGAAACATACCGAAGTTATTTTATTCTGCTTT
chr2:16346944-16346954
TTCAATTTTCCCATTTCAATTCTTAATATA16346944CCAACAATGTGTCATTGACTTTGTTGACTTAGTCTCAGGAA
chr2:16433599-16433609
CCAGAACGTGGACCTGGCAGGAGAGTTCTC16433599CCTACAATGTGATAGGGTTAATAAAAGCAGCCACAGGAAGT
chr2:17177835-17177845
AAGCTGATCCCCAGGGTCAGGCAGTGTGTC17177835CCAACAATGTGTACATACCTGCTGATGCTTTCATTGCTTGT
chr2:17852969-17852979
CCCAGGACCATCAACCCAAGTGTAGCACCA17852969CCCACAATGTGCTAGGCCATCCCCCATCAATCGCTAATTAA
chr2:19140170-19140180
ATACATACATACATATATACATACATATAT19140170CCTACAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
chr2:19463604-19463614
TTAGAAAGAGACACTTCCATGTTTTCTTTT19463604CCAACAATGTGCATTTTTGTAAACTGCTATAAATTGCAATT
chr2:21581974-21581984
ATTACTGTTCTAGTAAACATACTTTTCCAT21581974CCTACAATGTGATTGGTTGAGAGTGTGAAAATCATATTCAT
chr2:21624819-21624829
CTTGTAAATTCTGTGAGTTTGAGAACAGTC21624819CCCACAATGTGTGATTTCAGACTGCAGGCAAATTGTAAAAG
chr2:22110595-22110605
TCTTGGATGAACTGTAGGAAAAAAAAAGAC22110595CCTACAATGTGAATTTATGACTGTGATTTTCTTTCTCTTTT
chr2:22700899-22700909
TGGTAAAGTACTACTCCAGTTTTCCTTTAA22700899CCAACAATGTGATATTCTTCCCAAGGCACAAAAAGAACCCA
chr2:25724991-25725001
TCTCAGCTGGTCTCTAGTATGTGCTAAAAT25724991CCCACAATGTGCAGGCTGCAATGACAGTGAAAGAATCTATT
chr2:25727623-25727633
AGAGACAGGTGGATCTCTGCAAGTGAAAGA25727623CCCACAATGTGAGGACTCCCCCATGTTCTGACTCAGGAGAA
chr2:26636651-26636661
GATATGCTACAAGTTCATTTGATGCTACAC26636651CCCACAATGTGGCTTCAAATGGTCTTTGACTTTGTATCAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://crispr.dbcls.jp/detail/en/mm39/CCNACAATGTG
lang : en | db : mm39 | k : 0 | strand : | nogap : | query_string : CCNACAATGTG | format : html | download : | debug : 

0.006 | 0.006 | search_start;
0.080 | 0.074 | search_plus_done; http://172.18.8.138:28851/match?q=CCNACAATGTG&k=0&no_gap=0&offset=0&limit=200
0.113 | 0.033 | search_minus_done; http://172.18.8.138:28851/match?q=CACATTGTNGG&k=0&no_gap=0&offset=0&limit=0
0.113 | 0.000 | cgi_end;

CRISPRdirect | DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use CRISPRdirect in your work, please cite:
Naito Y, Hino K, Bono H, Ui-Tei K. (2015)
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.
Bioinformatics, 31, 1120-1123. [Full Text]