CRISPRdirect — Rational design of CRISPR/Cas target. 

0 mismatch/gap   |   ≤1 mismatch/gap   |   ≤2 mismatches/gaps   |   more:

Search for: both strand plus strand minus strand

2025-06-15 04:38:19, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:3065434-3065444
TCCTGATTTCTTCAACAACCCATTCAATAT3065434TCAACAATGTGTCTAATCTTCACACGTTTTTATGTGTTCTG
chr1:3067469-3067478
CAGCTTAGGCCCTCTCCACTGCCTGACAAC3067469CCTACAA-GTGAGTTATTGGCACAATCTACAAATGATTCTA
chr1:3086033-3086042
CCAGAGTGTTTGTACAAGCTTGCAATCCCA3086033CCAACAATG-GAGGAGTGTTCCCCTTTCTCAACATCCTCGC
chr1:3107977-3107987
GTTCCTCTGAGGCAGCGCCATTTTCGGCTA3107977CAGACAATGTGCCACCTTCCTGGTCAGAGCACAGGTGTCCG
chr1:3133780-3133789
CCCAATGATCTAGACTCTTAAGCATTGTCT3133780CCAAC-ATGTGGCAGACTTGAGACTCAGCCCTTCATTCTTC
chr1:3147974-3147984
GTACAAAAACTAACTCCAAATAGGTCAAAG3147974ACTACAATGTGAAATCTGAAAAAATAGAACCACTAAAAGAA
chr1:3186096-3186106
CATAAACAACTAAATAGCAAATAAACCAAA3186096CCAACAATGTCAGAAACAAACAGCAGTCATAAGGAAATGAA
chr1:3207878-3207887
CCAGAGTGGTTGTACAAGCCTGCACTCCCA3207878CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCTCGC
chr1:3211982-3211992
CCTCAGAATGCAAGGCTGGAAAACAATTTT3211982CCAAGAATGTGGTCTGCAGAAACAAGCTGGAGTAGCCATTC
chr1:3225736-3225746
AACTCCTTCTCCCTGTTTCCCACCTATCAT3225736CCAAAAATGTGGAGGAATATCAACTTAGTGTTATTTTCACA
chr1:3268135-3268144
TTATTTTGTTTTATGTGTACAAGTGTTTTG3268135CCTAC-ATGTGTGCATGTGTACCACATGCATTCAGTGCCTA
chr1:3296598-3296608
ACCATTCAAGCTAATACTGAAAAGCAGCCA3296598CAGACAATGTGAGAAAAGTAGCAGTCATTTGGGCAAACATA
chr1:3309179-3309188
CCAGAGTGGTTGTACAAGCCTGCAATCCCA3309179CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCACGC
chr1:3348528-3348538
GTGCCTACAGGATTGCTATGGCAAAAATTT3348528CCTATAATGTGGATACATTCGAGGATTTCTCCCAAACGTAA
chr1:3404327-3404337
TCTACCTCTCAGATAGATACTTTTATCCTC3404327CCAACAATATGTTTTTTACTATGCAATCATATCACTTGAAA
chr1:3413677-3413687
CAAGAAGGAGTTATAATGATTCTTCTCTTT3413677CCTTCAATGTGACCAGTTATTCTAACCCAATATTGGACTGG
chr1:3424189-3424199
AAAATTTATAAAGAAATGGTAATAAATTTG3424189CCCACATTGTGTTAAATACTTGCATGTTAACCAGAGTTTTA
chr1:3466806-3466816
TTTTATCAAACGTACATATTTAGTTGAGTG3466806TCTACAATGTGAATAGGTAGTACGCTCAGTGGTGGGACTAA
chr1:3508394-3508403
GTTTAGTTCCCAGCACTTATTTCAGCAGCA3508394CCCAC-ATGTGGTAGCTCATAACTGCTGATAACTCCAAACC
chr1:3517956-3517965
CAACTGTTGGATATATTTATTTTAAACTTT3517956CCTAC-ATGTGTAGCTTGGTTATAGGTCATAACTTATTATC
chr1:3543154-3543164
GCTGAAGGGGTCTGCAGCCCTATAGGTGGA3543154ACAACAATGTGAACTAACCAGTACCCTCCCCCCCCCCCCGG
chr1:3550655-3550664
TAACCACCAACACAGCTACAAACCCTGAGA3550655CCAACAATG-GTGAGTTGTCTGCATAATATGCTGGGTCAAC
chr1:3567935-3567945
CTTAAGGCTTATGTCCTTGGCTGCTTATGC3567935CCAACAATGTGGCCAGGTTAACCTTATAGAATATATAAAGC
chr1:3570792-3570801
CCAGAGTGGTTGTACAAGCCTGCAATTCCA3570792CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCTCGC
chr1:3585436-3585446
CATCACGAACTGTACTCTGTCAATGTGAGT3585436ACAACAATGTGAAGTCCCTGTAAGCAGCTTGTCAGATACTT
chr1:3617525-3617534
AACCCCCAGAATCATGGCTTCCAATCTGGC3617525CCTACAAT-TGTCCTTACTTTCACATAAAGCATTGGGTATT
chr1:3656781-3656791
ATCTGGTTAGGATGAGATTTCTTTGCGGAA3656781CCAACATTGTGACATAATTCTGGATGTGTTGTTAAGTGCCT
chr1:3718104-3718114
ATCTTTTTCATAGCTTTCCAGTGTCTGTCA3718104CCTAAAATGTGAAGATGAGAACTGACATGGCTGTTTGGGGA
chr1:3731327-3731336
CATAACTGTCCAGGCAAAAGATAGTAGCAT3731327CCAACAAT-TGTACCAAGAAGAGAAATTGAAAATGAACAAC
chr1:3743770-3743779
AGGTGAGATTAGTCTCACCCAGTGGATACA3743770CCAACAAT-TGTCCTCAAAGACTAGTGCCCAGGGGTTCTGC
chr1:3754303-3754313
TTGTTCTTCTTGGAGCACAATTAATATATG3754303CCTACAATGAGTAAGATCTTCTGAAAAATCCCACTCTGACT
chr1:3811354-3811365
TAAAAAAAAAAACTTACTTTTTATAGAAAT3811354CCTACAATGCTGATATCTTGGTACTGTTTTTTACTGAAGATG
chr1:3829714-3829723
TAGCAACTTGACTTTACTCACATGCCCTCT3829714CCCA-AATGTGCCAAGTACCTTCTGGTCTTGGTGGACACCA
chr1:3832714-3832723
AGACCTTATGAATCCTAAGAAGAAGGAAGA3832714CCAA-AATGTGGATGCCTTATTGCTTTTTAGAAGGGTGAAC
chr1:3837343-3837352
CCAGAGTGGTTGTACAAGCCTGCAATCCCA3837343CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCACGC
chr1:3886177-3886186
CCAGAGTGGTTGTACAAGCTTGTAATCCCA3886177CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCTCCC
chr1:3896208-3896217
CCAGAGTGGTTGTACAAGCTTGCAATCCCA3896208CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCTCGC
chr1:3903203-3903213
ATTTGAGATGTGACCCTATTCTACATGTAT3903203TCTACAATGTGTCATCTGTCATGGAGTTCTCAATAGACCCC
chr1:3912941-3912951
ATTTGGAGCATTCATTTCATTTTAGCATGT3912941CCGACAAAGTGACACAGTTTTGTGCTGAAAGCCACTTCTAG
chr1:3918164-3918173
CCAGAGTGGTTGTACAAGCCTGCAATCCCA3918164CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCACAC
chr1:3959477-3959486
CCAGAGTGGTTATACAAGCTTGCAATTCCT3959477CCAACAATG-GAGGAGTATTCCTCTTTCCCCACATCCTGGC
chr1:3992801-3992810
CCAGAGTGGTTGTACAAGCTTGCAATCCCA3992801CCAACAATG-GAGGAGTGTTCCCCTTTCTCCACATCCTCGC
chr1:4004796-4004805
ATTACAAGATTAGGATTTTAGTTGCTGCGC4004796CCAACAAT-TGCATTACCACTGTTCTGAACTACGTTTGTGT
chr1:4013266-4013276
GCGGAGATTATTGAGAGTGTTTTAACTATT4013266CCAACTATGTGCTAAATGCATTTGACATTACTAACTCACCA
chr1:4029231-4029240
GTAAAGGAATTTATTGATGAAGTCCAATTC4029231CCAACAATG-GTTCAGTAGTAGCTGTGAATGAAAGTTCAAG
chr1:4044580-4044590
TCTGCTACATATGCAGCTAGATATACAAGT4044580CCCACCATGTGTACTCTTTGGTTGGTGATTTAGTCCCTGCG
chr1:4053622-4053632
CATGTATTTCTGCATAGTGCTATTGAAAGA4053622CCCACAACGTGAGGACTCCCCCACGTTCTGACTCAGGAGAG
chr1:4058198-4058208
CGTTTCCCGGCCAACGCACCAAATGAAAGA4058198CCCACAACGTGAGGACCCCCCCACATTCTGACTTAGGAGAG
chr1:4069309-4069319
CATTCTGATTACTATATTTCCTTAGTGTTA4069309CCACCAATGTGAAGATAGGTAAGTCGTTACCTAAATTTACA
chr1:4126026-4126035
AGTTACCAAACCCAGACACTATTGTGGATG4126026CCAACAA-GTGCTTGCTGTCAGGAGCCTGATATTGCTGACA
chr1:4148851-4148861
ATCTGTTATTCCTGAGTCCAGTATTTAAAC4148851CTCACAATGTGGCTCAATAGTGCCACCACAAAAATGGATAT
chr1:4150578-4150587
CCAGAGTGGTTGTACAAGCCTGCACTCCCA4150578CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCTCGC
chr1:4192955-4192964
GTTTGATAAATACTGAGGTTATAAAAGCAA4192955CCAA-AATGTGGATTCTGACCCAGAGCTCCCACTATCAGAG
chr1:4196719-4196729
AAGATTTATGTCTAACCACTTATGTCCTTG4196719CCAACAATGTTCAATGCCAGAATAAATTTCTAAGACTTACT
chr1:4225144-4225153
TTTTCAGTGCTCTCCCTGATGAATCATAGT4225144CCCA-AATGTGAAGAATTTCACAAGATGACATTGTCATCAC
chr1:4235296-4235306
ACTTAAAAGACCCCATAGATTATCACAGTC4235296CCAACAATGTTTAAAAGTCTAAAGTTTAAAGACTCTTCTGA
chr1:4236575-4236584
GATTAAGCAAAGGAGACCCCAAACCCTGCT4236575CCCACAATG-GCATATTCCTCCAACAAGGCCACACCTACTC
chr1:4239847-4239856
AACTGTCCTGGTTGACTTTTGGCCAGTGCT4239847CCTACAA-GTGACACAAGCAGTAGGTTATATGCAAACCACA
chr1:4240520-4240530
TTGGTCCAGTGACACCTTCATATCCATACA4240520CCCACAATGTGACATTGGCCTGAGTACCTGTGTTTCCAGTC
chr1:4240931-4240941
AGTGCTACAACACAGGAGGGCACGCTAGAG4240931CCAACAATGTGAGCTTATAAATTTTTCATAAAGTTGCTTGT
chr1:4241929-4241939
CCTGCTACATATGGAGCTAGAGCCATGAGA4241929CCTACCATGTGTTTTTTGGATGAGTGGTTTAGTTCCAGGGA
chr1:4243770-4243780
GGCATCAGATCCCATTATAGATGGTTGTGT4243770GCCACAATGTGGTTGCTGGGAGTTGAACTCAGGAACTCTGG
chr1:4252704-4252714
TTATATGCCTCATTACAGGGGAACTCCAGG4252704CCCAAAATGTGGGAGTGGGTGAGTAGGGGAGTGTGAGGCAG
chr1:4280389-4280399
GTAGAGGGTAACCAATAGCATTGACAATAG4280389CCTATAATGTGTGAGTAGCCAATAATGACCCCTTTGTCTAA
chr1:4283992-4284001
CCAGAGTGGTTGTACAAGCCTGCACTCCCA4283992CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCTCAA
chr1:4298488-4298498
GAGAGAGAGAGAGAGAAAGACCTCAATGCT4298488GCTACAATGTGGACCCAGGGCGTTTTTTTTTAAAAGTCATT
chr1:4366869-4366879
TGCATATGTAGCAGAGGATGGCCTAGTTGG4366869CCATCAATGTGAGGAGAGGCCTTTGGTCTTGGGAAGATCAT
chr1:4415853-4415862
TCAGCCATTGTTGGACCAGGAGCCAGCTCT4415853CCGA-AATGTGAATATGGCACCTCAATGCTGTTCTTATCTA
chr1:4434222-4434232
TAATGCAATGTAAATGCTATTTGCTAAATC4434222CTTACAATGTGTTGTTTAAGGCATAATGACAAAGAGAATGT
chr1:4449581-4449590
CTCCAGAATGATTTCCAGCGTGCAATTCCA4449581CCAACAATG-GAGGAGTGTTCATCTTTCTCCACATTCTTGC
chr1:4453174-4453183
GTTTAAATTGTATATGCTAGGGTTCTCATT4453174CCTACAAT-TGATTATCTCCAATGAGCAACTTCTAGAATAA
chr1:4499604-4499614
GCTGAAGGGATTTTCAGCCCTATAGGAGGA4499604CCAACAATATGAATTAACCAGTACTTCCCCACCACCACCAG
chr1:4518432-4518441
CTCAGGGCAAAACCACACCCAGCTAAGCTT4518432CCAA-AATGTGAAAAGGAATCAAAGAAAAGCTCAGGGCTAG
chr1:4520292-4520303
TATGATCTGGCAATCTCACTGGATACTTAC4520292CCAACAGATGTGAAACTGATAAGGACTCTAGTGACTAGAGAG
chr1:4541264-4541274
TTGACCCAAGCCAGCCAGCCAAGTAACCGC4541264TCTACAATGTGAACCCAGAACCATGTGCCTCCAGAGCCCAT
chr1:4543870-4543879
TACTCCTAGCCAACAATTCAAGGAAGGTAT4543870CCCACAAT-TGCTACAGAGCTTCTGGGATGAGTACCATCTC
chr1:4618675-4618685
CATGGTACTTGGCAGAACTGCTAACATGTG4618675CCAAAAATGTGCCCAGTAATCTTGCTCGAAATACCCAAATT
chr1:4618849-4618859
ATGATCTTCCAAAATATTTGAAAAACAACT4618849CCCACAAAGTGTATGAGACCCAGTGATCCCAAAGCACATGA
chr1:4620200-4620209
CATCAGAATTCAGTCAGTTGTTCTTGCGGT4620200CCAACAA-GTGAGGCTAAAGAAGAAGCTAAAGAGTCTTTCA
chr1:4637861-4637871
ATCTTGTGACGGCGAATGTGGGGGCGGCTC4637861CCAACAGTGTGTGTGTGTTTTGTCTGCATATTTCTATGCAC
chr1:4647374-4647384
CCCAAGATCATCTTCCCAGAGACACCACCA4647374CCCACAGTGTGCTGACCTCTCCCATATTAATGATTAACACC
chr1:4672845-4672854
CCTGGAATCAGCAATGCAGGTCTGACTCAC4672845CCCAC-ATGTGCCAATGGAGGCCACAATGTGAGGAAATAAG
chr1:4672864-4672874
GTCTGACTCACCCCACATGTGCCAATGGAG4672864GCCACAATGTGAGGAAATAAGCAATACACAATTGGGGAGGC
chr1:4717371-4717381
CAGATCTTATCATTTCTTCCCATAATCCCC4717371CCAAGAATGTGGCAGCCTCCTGATCTAGTTCATCTTCCAAA
chr1:4717530-4717540
AATCTGTCTGAGTAGGACACAAGCATTAAA4717530CCCACAGTGTGCAGTAATTCTCGTCTACTTCTTGGTTTCTA
chr1:4742698-4742708
TCATCAGTCAACTTCAGCCTCCTGGGACAA4742698CGCACAATGTGAGTAAAACTGCCTTTCATCATAAATCGTTC
chr1:4752410-4752419
AGGTTCATGCAGAAGATGGCAGGGCTGGCC4752410CCGACAA-GTGATCCTGAGGTGATCCCGAAGTCCTGCAGCC
chr1:4780328-4780337
CCAGAGTGGTTGTACCAGCTTGCAATCCCA4780328CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCTCGC
chr1:4782737-4782746
TATTATGACTTACAGTCGGCAGCCCAATTC4782737CCAACAAT-TGTTCAGTTGCAGCTGTGAAAATGGAAGTCCA
chr1:4814984-4814994
GTGGGATAGCTTACATTGATGACCAAAACT4814984ACAACAATGTGCAATTATATCTAGCTTACTTCTTTGAAGCT
chr1:4845651-4845660
AACCCGCAAAGTACATTCTGAGATGGAAGG4845651CCG-CAATGTGTTCTCCCTTCAGATGACTAATTTCCTCTCA
chr1:4853415-4853425
AAATAACATCATAAAATAAAAATGGTACCC4853415ACTACAATGTGCCATAAACATATTATATATGCATACATATT
chr1:4873473-4873482
TACTGATTTATAGGCTGTGGTCAGTGTAGT4873473CCAACAATG-GCAGCCTCTTGATGGAAAGGTCAAGGATCTA
chr1:4906999-4907009
GCATCAGACCCCATTAAAGATGGTTGTAAA4906999CCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGG
chr1:4921427-4921436
AGTCAAAGCAGTCCATTACAGCACAGGAAA4921427CCAA-AATGTGTAACATTTTAATAGATGAACCTCATCCCAT
chr1:4982450-4982459
CCCACCAACCCTACAACTTGACCCACCAAC4982450CCTACAAT-TGAGTGGACAGAGCCCAGGACTGTGCAAAAAG
chr1:4987312-4987322
ATTTTAGATACTTAGACAGAATTGCATTTT4987312TCAACAATGTGATCCCAAATGTTATTTTAAAGGAAACCATA
chr1:4995736-4995745
AACTCTTTTGTGTTGCAAAAGAAACACAGA4995736CCAACAATG-GTTTCTTTCACTTCAGGACACTGAGGCATAA
chr1:5008988-5008997
TGGAAAAAACAATGGCTGATCTCTACTGTG5008988CCTAC-ATGTGAGATGGTGGGAAGAATGAGCCGAAGTACCA
chr1:5031626-5031637
AAATCCCCTATCTATCAACTGTTGAAAGGA5031626CCAACAAATGTGATGCCTCTACCAGCATTTACAGCAGTCATT
chr1:5037173-5037182
CTCAGACATTGCCTAATGCTTCTCTTTAGC5037173CCCACAA-GTGGTAATATTAAGGGTTTAATATGAATCTTTT
chr1:5060179-5060189
GGAACTGGAATTACAGGAAATTGTGACTTG5060179CCCAAAATGTGTAACAGAAGCTGAGCTCAGCTCCTCCACTG
chr1:5072623-5072633
CTCCATGAGATGAAACCCATTCTTGCATGA5072623CCAAGAATGTGAGACTAGATAGCCCAGGGATCTAAAGGAAA
chr1:5106025-5106034
CCAGAGTGGTTGTACAAGCCTGCAATCCCA5106025CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCACGC
chr1:5123805-5123814
AGACCATATGAAGCTCAAGAAGAAGCAAAA5123805CCAA-AATGTGGATGCTTCAGTGCGTCTTAGAAGGGTGAAT
chr1:5124831-5124840
CCAACACAGTTCTTGCCTATGTACTTCCAG5124831CCTAC-ATGTGACCTAGCACAACCTTACCATTGAGTTAGAA
chr1:5127915-5127924
CCAGAGTGGTTGTACGAGCTTGCAATCCCA5127915CCAACAATG-GAGGAGTGTTTCTCTTTCTCCACATCCTCCC
chr1:5154756-5154766
TCATTGCGGCCAAGGCTGCTGAAGTTCGTG5154756CCAACAAAGTGAACTGGCAGTCTTATCTTCAGTGCGTACTG
chr1:5164858-5164868
TCTGTGTCAGTGACTGGCAGGCATGTTATA5164858GCAACAATGTGAAATAGCTGGCAGGCATGGAACCAAATGGA
chr1:5166865-5166874
ACATTTCTGTGCAAGTGTGTTCTTTGCCTA5166865CCCAC-ATGTGTGTTCTTGTATATGCACCTGGATTTATATG
chr1:5241450-5241460
GATCTTGTCTCTGTGGGGCTAAAAAGTGCC5241450CCAACAATCTGACCAAGATAATAGGAAATTACAGAAGTCAG
chr1:5243927-5243936
AGCCTGAAGGAATGACCATCCAGAGACTAC5243927CCCAC-ATGTGGATCCATCCCATAAACAACCACCAAACCCA
chr1:5272389-5272400
AATAATATGAACTAAACAGTAACCCCCTCC5272389CCCACAACTGTGTCTCTAGTTGCATATGTAGCAGAGAATGGC
chr1:5275610-5275619
TCCACCTATAAAGCCTTACCAACACGACTG5275610CCAA-AATGTGAGCTGAACATGAGTGACACCAGGAGCCATG
chr1:5278230-5278240
GGAGAGTCTTTGTTCTGCTATGGTTGGCCT5278230TCCACAATGTGCTGCTTTGCTACAGAGCCTAAATAAATTAG
chr1:5320320-5320329
ATTGATGACTTACAGTCGGCAGCCCAATTC5320320CCAACAAT-TGTTCAGTCGCAGCTGTGAATGGAAGTCCAAG
chr1:5326295-5326304
ATTGATGACTTACAGTCGGCAGCCCAATTC5326295CCAACAAT-TGTTCAGTCGCAGCTGTGAATGGAAGTCCAAG
chr1:5330908-5330917
TCAAAAACAGATGACATAGGGTTACAAACA5330908CCAA-AATGTGGGGTCATAGTGGCCCTCTTAGAGCCTACCA
chr1:5338033-5338042
CCAGAGTGCTTGTACAAGCCTGCAATCCCA5338033CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCACGC
chr1:5350465-5350475
TTATAGATTCATATCCACACTTGCTAATTG5350465CCAACAATGTCTAACAGATCCCCCACTCTTCTCCCCAACTC
chr1:5353362-5353371
CCCTTGACTGCTTAGATGAACTTCTTATCC5353362CCTA-AATGTGTCCATCTAAGCATCTGGTCAAGTAAGTCCG
chr1:5372831-5372840
CTTCTTTGTCAAAAACCAAGTGCCTATACA5372831CCCAC-ATGTGGGGTTATATCTGGATCTTCAATTAGATTCC
chr1:5384903-5384913
ATCCAGCACCCATGTAATGGCTTATAACCA5384903TCTACAATGTGATCTGATGCCCTTTTCTGGCATGCAGTTGT
chr1:5404261-5404271
TGTACACACACACACACACACACACACACA5404261CACACAATGTGGGACATGTTTTTAAAAAAATCTCAATATTA
chr1:5418043-5418052
TAACATATTCTGCATCAAGTTGTTCTTTAA5418043CCAAC-ATGTGGGCAGCTTCCAGCTTTTCCTTGGGTAGGGG
chr1:5432052-5432061
CATCTATAAGATGGAACACAGCCCCCCAAC5432052CCCACAATG-GAGAAGCTAGAGAAAGCACACAAGGAGCTGA
chr1:5440522-5440531
GATCTAGATCAGTTACTCTAAGTCTCCTGT5440522CCAA-AATGTGCACTTACTTCATCAATAATGATTTCCCTTC
chr1:5461210-5461219
CTATAATGTTTGTACCAGCTTGCAATCCCA5461210CCTACAATG-GAGGAGTGCTCCTCTCTCTCCATATCCTAGC
chr1:5482712-5482722
GAAATTATGCTGAGGGAGAATAGCCCAGAA5482712CCCACAATGTAAATAGCATCTGTAACGCCTGTAAAGTCCAC
chr1:5512904-5512913
ACACATATACATTTGGTAGATGGGCTGAGT5512904CCCA-AATGTGACACATTATTCCTTCTTTCTTATTTCTTCT
chr1:5535835-5535845
TTGAGTAGCCCAGTTACTTAGAATTTATTT5535835CACACAATGTGAGTGCATGCCATAGGAAATCATGGACTTTT
chr1:5536229-5536239
CACACTCCTGCTTCCTGGTTCTGGCATTCC5536229CCCACAATGGGGCATAACATCTTCACAGGACCAAAGGACTC
chr1:5537540-5537550
AGGGATGGGAAGTTTTTTTTTGAAAATTAA5537540CCCACAATTTGTGTTTTATATGTAGATGTATAAAACACAAC
chr1:5555148-5555157
ATTGATGACTTACAGTCTGCAGCCCAATTC5555148CCAACAATG-GTTCAGTAGTAGCTGTGAATGGAAGTCCAAG
chr1:5561236-5561245
ATTGATGACTTACAGTCTACAGCCCAATTC5561236CCAACAATG-GTTCAGTAGTAGCTGTGAATGGAAGTCCAAG
chr1:5608623-5608633
GATTATGTTAATTTATGTGAGGAAAATCCA5608623CCCTCAATGTGCTGACACCACTTCGGAGGTGTAGTACTAGG
chr1:5616356-5616365
CCAGAGTGGTTGTACAATCTTGCAATCCCA5616356CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCTCGC
chr1:5619232-5619241
TGTGTGTGTGTTTGTGTGTGCGGGTAAGAG5619232CCCA-AATGTGTACTACTTAGTTCAGAAGATCTCATGCCTC
chr1:5645361-5645370
CCAGAGTGGTTGTACAAGCTTGCAATCCCA5645361CCAACAATG-GAGGAGTGTTGCTCTTTCTCCACATCCTCGC
chr1:5651185-5651195
CTATGGAACTGGAGATTCAGATGGCTATGA5651185GCTACAATGTGATGCTGAGAACATGTCCTCTTGCTGAGCAT
chr1:5653090-5653099
CCAGAGTGGTTGTATAAGCTTGCAATTCCA5653090CCAACAATG-GAGGAATGTTCCTCTTTTTCCACATCCTCGC
chr1:5698657-5698666
CCAGAGTGGTTGTACAAGCCTGCAATCCCA5698657CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCTCGC
chr1:5705870-5705879
CCAGAGTGGTTGTACAAGCTTGCAGTCCCA5705870CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCTTGC
chr1:5733271-5733280
GGGTGATCAATATGAATCTGTTTGCACTCT5733271CCTAC-ATGTGGATATCTACTTAGACCAGCACCATTTGTTA
chr1:5734337-5734346
CAAAGTTGTTATAGAAGTTTGTACTCCCAA5734337CCAACAATG-GAGGAGTGTTCACCTTGCTCCACATTCTCAC
chr1:5771465-5771474
CCAGAGTGGTTGTACAAGCCTGCAATCCCA5771465CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCACGC
chr1:5782839-5782848
AGATTTAAGATTAAGTACCAGGATTTGAGG5782839CCAACAAT-TGACTCCAAAAATTAAAATCTCTGCACAACTA
chr1:5825410-5825420
CCCTCTCCTGCGTCCCTGTCCTGGCATTCC5825410CCTACAATGGGGCATCGAGCCTTCACAGGACCAAGTGCCTC
chr1:5873496-5873506
TATGGATTAGGCAGATTACAGACTGTTCTT5873496CCCACAAGGTGTCCTTCTAGAAAGGTTTTCTAGAAAGAATT
chr1:5878947-5878957
AGATGACTCTGTGGTGGGCCATGCTTTGGG5878947CCACCAATGTGTAGAAATTATACTTTTATCTGCTCCGGTAT
chr1:5897388-5897398
GCTCTCACTCATTACATTACTGTGCCTGTA5897388CCCACAATTTGGTACCATCTGAGACTTAACAGATATCTATT
chr1:5905296-5905306
TCTATTGGTCAATGGTTCTATTTTTATGCC5905296ACTACAATGTGGCTTTTATTACTATAGCTCTTTTACTACAA
chr1:5931121-5931130
CCTCAAATGTGCATATGTTGATGCTTATAA5931121CCAAC-ATGTGCTGTAATACTAAAAAAGGAGGATGATATCA
chr1:5938595-5938604
CTAGAGAGAATTAACCAGTGGGGTTCCCAT5938595CCAA-AATGTGGGTGGGGTCATCTTATAAGATGAGAGACAG
chr1:5940157-5940166
CCAGAGTGGTTGTACAAGCTTGAAAACCCA5940157CCAACAATG-GAGGAGTGCTCCTCTTTCTCCACATCCTCGC
chr1:5945078-5945089
TTTGGTGGAGTCCTGGAACCAAGATGGCTC5945078CCGACAATGCTGAGTGAAAGCCCTCTGGGGCCGGGCGGACAC
chr1:5957175-5957185
TCTCACATACATGATACTTGGAGTTGTACC5957175CCTACAATGTACTAAAATACTTTAGAATAACCTCATTTACC
chr1:5984131-5984141
GGCTGTAAGAACTATGGAATTACAAATTTT5984131CCTACTATGTGACTTGTTTATTTATTCTATGTTTTACTTAA
chr1:5991423-5991432
CCAGAGTGGTTGTACAAGCTTGCAATCCCA5991423CCAACAATG-GAGGAGTGTTCGTCTTTCTCCACATCCTCGC
chr1:6018432-6018441
TATCACCAAAACCAGACACTGTTGTGGATA6018432CCAACAA-GTGCTTGCTGACAGGAGCCTGATATAGCTGACT
chr1:6038397-6038406
CCAGAATATTTGTACCAGCTTGCAATCCCA6038397CCAACAATG-GAGGAGTGTTCCTCGTTCTCCACATTTTTGC
chr1:6059371-6059381
GGGACACTATTCCACCCACAAAACCTTCCA6059371CCCACAATTTGTCCTGCTTACAAGATGAACAGGAATAAAGA
chr1:6080201-6080212
ACCCGATTCTTCCCGTGGGTATTAATAAGA6080201CCCACACATGTGGCTCTGGGTATCTTTTGGGGAGGCGAGGCA
chr1:6119044-6119054
GATTAAAGCTGTTTTTCTTGGGATAATACA6119044GCAACAATGTGGAAATCAATTGATCAAAAACACATACATGT
chr1:6131367-6131376
ATGGGAGAGAGGGAAGAGGGAAGAGAGGTT6131367CCCACAATG-GTGAGAGTGAATGCAGCATTGATGATCAGAG
chr1:6142898-6142908
CTGGGGGGGATCTGCAACCCTATAGGTGGA6142898CCAACAATATGAACTAACCAGTACCCCGCCAGAGATTGTGT
chr1:6149301-6149311
CAGCATCAAACTCCTGAAGTTTGATGTGGC6149301CCAACTATGTGGACTTAAGTTTAGTTTTCCTTCTTACCTCT
chr1:6157367-6157377
TATGCCCTACAACACAAGTTACAGTCATGA6157367CCCACCATGTGAGTGTTAGAAATTAAACCTGGAAGAGTAAC
chr1:6158643-6158653
GCTGCTTCATTAACATGGACAGTTAAAAGT6158643CCCACAATGAGTGTAGGTGAATTGGGTTTAACATCTGTCAA
chr1:6195828-6195837
AAAACACAAGAAAATCAAGAAGAAGGAAGA6195828CCAA-AATGTGGATACTTCATTCCTCCTTAGAATAGGGAAC
chr1:6208399-6208409
CTGTAGAACACCAGCCTAGAGGTGCCAACA6208399CCCACAATGGGCTGTGTCCTCCCTCACCAATCACTAATTAA
chr1:6216286-6216295
CCAGAGTGGTTGTACAAGCCTGCAATCCCA6216286CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCACGC
chr1:6248701-6248711
CACTGAACTGTTTCCAGTTCCTACAGTCTG6248701CCCATAATGTGACCACCTGAACATGAGATCTATACTGGCTT
chr1:6252053-6252063
ACAACGGTCATGCAGTCTGTAAACTTTATG6252053CCCAAAATGTGGAATATACATGATTTCCCCCTTGTACTGGC
chr1:6279986-6279996
AGAACCCATGTTTGAAGGAGAGAACTGACT6279986CCTACAAGGTGTCTTCTCATAAACAAATGTACAGATACAAC
chr1:6308348-6308357
AAACACACAGGTTTTTTATATTTAAGGACT6308348CCTACAAT-TGGAAGATGATAAGGTATTTTCAATCTTTCAT
chr1:6324067-6324076
CCAGAGTGGTTGTACAAGCCTGCAATCCCA6324067CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCACGC
chr1:6336093-6336103
TGCTTTTAATCTGTTATGTCATCTTTCTAG6336093CCCAGAATGTGTGTGGTTTATTCATACTCGTGTTAAGGCGT
chr1:6362017-6362027
GGGCTCCTGCATAGCTGTCTCTTCCTAGGA6362017CCCACAATGTAATACATCTTCCAATTTAATATGTGTCTCAG
chr1:6364590-6364600
GCAGCAAAATGCTGGGTCCTGTTTATATAT6364590CCCACAATGGGCCCTTACACCCTTGATCACTAATTGAGAAA
chr1:6405014-6405023
CCAGAGTGGTTGTACAAGCTTGCAATCTCA6405014CCAACAATG-GAGGAGTGTTCCTCTTTCTCCAAATCCTCGC
chr1:6411264-6411274
CTGGTGTTGGGGCAGTTGTTGTGTCCTCTT6411264CCATCAATGTGTTTCTTTCTGTCACCTGTTATCTTCCTATA
chr1:6413066-6413076
TACTTCCTATGAGGCAAGCATATTCAAACC6413066ACCACAATGTGTCTGTACTGTATCTCTGTTATTTGAATACA
chr1:6415565-6415575
TCTGCTACATATGCAGCTGGAGCCCTGGGT6415565CCCTCAATGTGTATTCCTTGGTTGATGGCTTAGTCCCTAGG
chr1:6416730-6416739
CCAGAGTGGTTGTACAAGCTTGCAATCCCA6416730CCAACAATG-GAGGAGCATTCCTCTTTCTCCACATCCTCGC
chr1:6442895-6442905
CCAGAGTAGATAGAAAACACACTAAGAATC6442895CAAACAATGTGCAGAAAAGCTGTCACAATTTGGAAAAGTGA
chr1:6469100-6469110
TTGACATGCAGTTTTTGACTAATTCAGAAA6469100CCTACAATGAGTCTTCTTCCATCTTTGTTCTAGAATCCCTT
chr1:6479883-6479893
AGACAGAATGGAACAGAAAGAAAAATATAT6479883CCTACAGTGTGGCAGTTTGAATGAGAATGACTCCCATAGGC
chr1:6504976-6504986
ACATGACTCTGTGGTGGGCCATGCTTTGGG6504976CCACCAATGTGTAGAAATTATACTTTTATCTGCTCCGGTAT
chr1:6521379-6521389
AAACACAAGAAGCACTTTTTGCACATTTTT6521379CCTTCAATGTGACATTGGCTTGGCCTATAGAGTGTGACAAT
chr1:6528081-6528090
CCAGAGTGGTTGTACAAGCTTGCAATCCCA6528081CCAACAATG-GAGGAGTGTTCCTCTTTCTCCATATCCTTGC
chr1:6533349-6533358
CCAGAGTGGTTGTACAAGCTTGCAATCCCA6533349CCAACAATG-GAGGAGTGTTCCTCTTTCTCCACATCCTTGC
chr1:6536989-6536999
GCAGAAGAAAGGGCAAATAAACACAACCGT6536989CCTTCAATGTGAAATGAAAACTGTCTATATATGTCTAGTGC
chr1:6538560-6538570
CCCAGGACCAGCACCCCAGGGATGGACCCA6538560CCTACAATGGGTTGGGCTTTTCCACATCAATTATTATTTAA
chr1:6567271-6567281
TGACATATTGCAGTACTCAGGCGAGGGAGT6567271CCCACATTGTGTCATACTCTAACTTATGTCCCATAGGCTAT
chr1:6588806-6588816
TGGTGCATACATTAATGTGCATTGAAACCA6588806CCAACAATGTATCTTTTCTTCTTTGCCCACATTCTGGTGTT
chr1:6601126-6601136
TCTGCTACATATGCAGCTAGAGCCATGAGG6601126CCCACCATGTGTTTTTTTTTTTTTTTTGGTTGGTGGTTTAG
chr1:6634118-6634127
CCAGAGTGGTTGTACAAGCCTGCAATCCCA6634118CCAACAATG-GAGGAGTATTCCTCTTTCTCCACATCCACGC
chr1:6643087-6643096
AGTTACCAAACCCAGACTCTATTGTGAATG6643087CCAACAA-GTGCTTGCTGACAGGAGCCTGACATAGCTGTCT
chr1:6668844-6668853
TCATTGCCTGGTATAAAACAATGTTTCAAA6668844CCTA-AATGTGGAGTAAGTTTAGGTCAGTTAGTAATGCCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://crispr.dbcls.jp/detail/en/mm39/1/CCNACAATGTG
lang : en | db : mm39 | k : 1 | strand : | nogap : | query_string : CCNACAATGTG | format : html | download : | debug : 

0.006 | 0.006 | search_start;
0.569 | 0.563 | search_plus_done; http://172.18.8.138:28851/match?q=CCNACAATGTG&k=1&no_gap=0&offset=0&limit=200
1.068 | 0.499 | search_minus_done; http://172.18.8.138:28851/match?q=CACATTGTNGG&k=1&no_gap=0&offset=0&limit=0
1.068 | 0.000 | cgi_end;

CRISPRdirect | DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use CRISPRdirect in your work, please cite:
Naito Y, Hino K, Bono H, Ui-Tei K. (2015)
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.
Bioinformatics, 31, 1120-1123. [Full Text]