— Rational design of CRISPR/Cas target.
2025-06-22 03:34:43, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
TATAGGTGGAACAACAATATGAACTAACCA3050550 GT ACCCCGGA G
CTTGCAAAATTTATATGCCCCAGTACAGGG3050663 GAACG CCA GGG
ACTTACGTGGTACTGCCTTGAGTCCACTAT3053735 GAACA -CGTGG
TCTGGTATTAGGTGGTGGAGGGAAAGGACT3059414 GAAG CCCT GAGG
TTTGCATCCAACCAATGGACAGAAGCTGCT3059838 GAACCCT GTA G
ACTGGCCAGGTTGGGGTTCTTGTGTCCCTG3062999 GAT CCCA GGGG
GGTATGTACACATGAGTTTGTGTGCCCCAG3066008 GAG CCCA GAGG
ACTTGCTCGAAATAAGTCATGAACTTATGT3068020 GG ACCCC-TGG
ATCTTTTGATACATATGCAGCTAGAGACAA3085191 GAG CT CCGGGG
GCTTCTGGCTATTATAAACAAGGCTGCTAT3085879 GAACA CA GTGG
TCAGAAGCTCTGTGGCTCTTGCCTGTCCCA3091160 GAAA CCCC CGG
AAAACCCAAAGGGAGACAACTCTGGAAATA3091909 GAAA CCCT AGG
GGATAGCAAAAATACTTCTCAATGATAAAA3095148 GAACCT C-TGG
GCCTTATTTATAAAAGCCAGAAGCTGGAAA3096161 GAACCCA GAT G
AGGCCCCTTGGACTTGCAAACTTTACAGGG3096883 GAACA CCA GGG
CTCACGTTCCGCGGGGGTCACCTTGGTTAC3108069 GAG ACCCCGCGG
CGCGGCCAGCGGTCTGCGGGTGAGAGTGTG3108106 GAACA CA GAGG
TCACGTTCCGTGGGGGCCACCTTGATTCTG3108271 GAACT CCGCA G
GGATAGCAAAAAGTCTTCTCAAGGATAAAA3112358 GAACCT C-TGG
CCCTGTACCCCATAAAAGCCCCTGGCTTTC3115523 GAG CCT CGTGG
TGAAGAATTAGGGATCATTCCTGGAATTCA3117608 GAACCCA -TGG
CTCTTATGGAATAGTTGTGGGAAGGATTGA3118679 GAAT CCCGAA G
TGCTAGGGCATGGACCTGCAGAGACAGGCA3119828 GAT CCCT GGGG
AAGTTGTGTTCCACTCACCAGAGGTCCTAA3140912 GAT -CCCGTGG
AATATGAAAGTGGAGTTGGAAAGACTGTAA3150020 GAACCA -GAGG
GCCTTATTTATAATAGCCAGAAGCTGGAAA3155285 GAACCCA GAT G
AAAACTCAAAATGAGGCAATGCTAGAGATA3155788 GAAA CCCT AGG
ATCTTTTGATACATATGCAGCTAGAGTCAA3158098 GAG CT CCGGGG
TATAGGTGGATCAACATTATGAACTAACCA3161670 GT ACCCCGGA G
CATGCAAACTTTATATGCCCCAGTACAGGG3161783 GAACG CCA GGG
GTGTGTGGAATACTCTCACTTCTCCAAATA3165529 GAACCT -GGGG
AGAGAGGGAGTGGAAATCATGGTTTATTCT3166323 GAAA -CCGTGG
GCCTTATTTACAATAGCCAGAAGCTGGAAA3169364 GAACCCA GAT G
TATAGGTGGAACAACAATATGAACTAACCA3170002 GT ACCCCGGA G
GGTAATGTCTTAAGGCCAAGATGATGTCTA3170928 G-ACCCC-AGG
ATCTTTTGATACATATGCAGCTAGAGTCAA3176686 GAG CT CCGGGG
CTAGAGAAGTCTCCTGGAGATCATCCAGTA3198956 GAACCCCT AGT
AATCACATTCACTAAGATAGTAACAATTCT3204995 GAACCCA GGT G
ATCTTTTGATATATATGCAGCTAGAGTCAA3207033 GAG CT CCGGGG
TAGTAGAGCATGTGTTCCTATTACCTGTTG3211112 GAACA CCT AGG
TTGTTTTTCTCTTTTCTCCTATCTTAAACT3216873 G-ACCCCGGGC
GGAAAGCAAAAACTCTTCTCAAGGATAAAA3219472 GAACCT C-TGG
TGCTCATTTGTTCTGCCACACCCACTGCTG3220994 GAACCT -GAGG
TCCAGGTTTCCAAAATGCCTTTCCAGGCTA3221198 GAA-CCC-AGG
GTGGTCTGCTGGCCAGACACAACAATTGGC3221239 GAACCA A CGCGG
CAGATACAGTTTACCATAAGAAAAGTTAAG3225957 GAAT CCC-AGG
TGCTCATTCGTTCTGCCACGCCCACTGCTG3226165 GAACCT -GAGG
TCCAGGTTTCCAAAATGCCTTTCCAGGCTA3226369 GAA-CCC-AGG
GCCTTGTTTATAATAGCCAGAAGCTGGAAA3230931 GAACCCA GAT G
GTCTTATTTATAATAGCCAGATGCTGGAAA3244543 GAACCCA GAT G
CTTACAAACTTTATATGCCCCAGTACAGGG3246382 GAACA CCA GGG
TAATAGGACATAACCCCTTGTCCCTTGGCA3246998 GAACCCCT TA G
GCCTTATTTATAATACCCAGAAGCTGGAAA3249884 GAACCCA GAT G
ACAGGGCTCCCAATGGAGGAGCTAGAGAAA3250462 GAACCCA -AGG
TATAGGTGGAACAACATTATGAACTAACCA3250523 GT ACCCCGGA G
CTTGCAAACTTTGTATGCCCCAGTACAGGG3250636 GAACG CCA GGG
GATTTATTTCTACCATTTCTCTCCCATATG3252658 GAT CCCA GAGG
CTTCAGTCCTTCCCCTAACTTCTCTATTGG3255192 GAACCCT GTGC
TGTTTGGGTTTGGTGTCTGCATGTGGGATG3255351 GAT CCCC-AGG
AATACGGCAGAAGAGCTGAGAACAGAATAG3255613 GG ACCCC-AGG
GCCCGAGAGACCCGTTCCATGCAGACACAG3262391 GG ACCCA GAGG
CAGTGTTGCCAAATTTGAATCACTGTTGAA3268015 T AACCCA GAGG
TACTATGTACAGTTGAAGTTAGGGAGCTGA3270605 GAACCT A GTGG
TACTGGTGGTTGTGAGGGGTAAGGGAGATA3280175 GAT CCCA GAGG
GAGGACAATAAATATCCCAAAATACAGCTG3287007 GAAA A CCGAGG
GGCTTATTTGTAATAGCGAGAAGCTGGAAA3300050 GAACCCA GAT G
AAAAACAAAAGTGAAGCAACTCTGGAGAAA3300980 GAAA CCCT GGG
GGCTTATTTGTAATAGCCAGAAGCTGGAAA3305349 GAACCCA GAT G
TAGACTTTTAACTTTCAGCATGAAGAAAAG3320163 GAACA CT GTGG
TCAGTGGCAGTTCAGGCTGGGACCTCACCA3321859 GAG CCCC-AGG
TCATTCTGAGGCTTCTGGGTAGCCATCCTG3323333 GAAG CCCGGT G
AAATTAAATAAAGAGACCATATATTTGAAA3326378 GAAA CCA GAGG
GCCTTATTTATAATAGCCAGAAGCTCGGAA3332089 GAACCCA GAT G
TGTCTGGGTTTGGTGACTGTATATGGGATG3334811 GAT CCCC-AGG
TTTTAGAGCTGCATAAATGGTTTAGAGAGA3340046 GAACA CA GAGG
AGAAATATTTCTCAGGGCGCAGAGTCGGTG3341022 GAC ACCCCA AGG
TGCTCATTCGTTCTGCCACGCCCACTGCTA3344455 GAACCT -GCGG
ACATCGGGCCTTCCTGCGAGATCTTGCAGG3346356 GAACCCA CGCGC
TTCAGCCATATGTTATGTCAAATTTGCCTG3347309 T AACCCT GTGG
TTATATGTTGCTCAGTCAGTTCCCTTATTG3349044 GAAA CCT GTGG
CGGGATTAAACATAAAACTGGAATTCCTTA3349682 C AACCCCA TGG
CAGATACAGTTTACCATAAGAAAAGTTAAA3350213 GAAT CCCA GGG
TGCTCATTCGTTCTGCCACGCCCACTGCTA3350422 GAACCT -GCGG
CTTGCAAACACTATATGCCCCAGTACAGGG3353141 GAACA CCA GGG
ATTAAAAGAGAATTGAGCTGTCAAGCCATA3355925 GAACCT CGAA G
GCCTTGTTTATAATAGCCAGAAGCTGGAAA3362342 GAACCCA GAT G
TATATTGCTCATATAATTAAAAATATCGTC3372003 GAG CA CCGGGG
CCTGGGGCACAAGTCCCTTCCGCTCCACTC3372202 GAG CA CCGGGG
GAAACCCAAAGCAAGGCAACCCTGGAGATA3372890 GAAA CCCT AGG
GAATAGCAAAAACTCTTCTCAAGGATAAAA3376272 GAACCT C-TGG
GCCTTATTTATAATAGCCAGAAGCTGGAAA3377305 GAACCCA GAT G
TATAGGTGAAACAACATTTTGAACTAACCA3377929 GT ACCCCGAA G
CATGCAAACTGTATATGCCCCAGTACAGGG3378042 GAACG CCA GGG
TATAGGTGGAACAACATTATGAACTAACCA3378918 GT ACCCCGGA G
CTTGCAAAGTTTATATGCCCCAGTACAGTG3379031 GAACA CCA GGG
AAAACCCAAAGGGAGACAATTCTGGAGATA3382561 GAAA CCCT AGG
ATCATAAATGAAAGAGGAGACATAACAACA3384546 GAACCT -GAGG
GCCCTATTTATAATAGCCAGAAGCTGGAAA3386956 GAACCCA GAT G
AGTTGGCCTAGTTGGCCATCATTGGGAAGA3387643 GAAG CCCCT AGG
CCAAGAATGCAAACTCCTGTGTTGTTTTGG3389670 GAACCA CT GGG
TAAAATGCAGTGCACAGACTCTGACTCTGA3392345 GAACCT T GTGG
GCAAATACTGTATGAGGACTATCAAGGACA3394805 GAA--CCGAGG
ATGACATGTGCTTGGAACTCTCAAACTGGG3395218 GAAG CCC-AGG
TAATTTGATGATAAGAAAGCTATAAGAGTA3402304 GAACCA CA GAGG
ATGAGAAAAAAAAAAAAAAAACTGGAGATA3406622 GAAA CCCT AGG
ATCAAAAATGAAAAAGGAGACATAACAACA3408601 GAACCT -GAGG
TGGCGGGCAGCAGACAGCCGGCCACCATCC3415012 GAACCA -GAGG
AAAACTCAAAGTGAGGCAACACTGGAGATA3415797 GAAA CCCT AGG
GGATAGCAAAAACTCTTCTCAAGGATAAAA3419179 GAACCT C-TGG
GCCTTATTTATAATAGCCAGAAGTTGGAAA3420209 GAACCCA GAT G
TTGAGACAAACTTTACTGTTTGTGGGGGAA3426187 GAACCA T GTGG
TCAATTCATTATTAATTTGCTAAGAAGCAA3429472 G-ACCCC-AGG
GGAGGATGGAGAAGATTCCCAGATGCAACA3430492 GAACCCCC AA G
TCTGGAATGAATAAAAAGCAGAAAGTGGCT3434721 GAACCCC-AGC
TTTAGGGGCTAATAATCAGAAAATCTGTGT3440800 GAAA CCC-AGG
AATTTAGGGAGTTTCCAGAGAACTCTTCCA3450478 GAACCT T GTGG
AATACTGCCCTGTTTATGCAAGGGATTTGA3451210 GC ACCCC-AGG
AGCTTCATCGGCAAAGATATCTAAGTCAGA3451569 GAACCA -GAGG
TTTTCAATGTGATTCACACAGAAATCAGGA3458388 GAAG CCT GAGG
AAATATAGAATGCATTTTAGTAGGTGCTTA3458724 GAACCT -GAGG
TGCTGTCTCTGGGGCCACATTTCCTGAATA3463800 T AACCCC-TGG
GATGGAATGTTGGTCACAGACATTTCCTCT3469023 G-ACT CCGTGG
AGTGGAAGGGGGTGGGGCGGCACTAGGGCA3470476 GC AG CCCGGGG
TTATGCTACAGAATTAGTAGTGTGTACCTG3471028 GAAT CCC-AGG
GGCATTTTCTTGGATGTTTTTGAGGTTTTT3471410 A AACCCT GTGG
GCCTTATTTATAATAGCCAGAAGCTGGAAA3472798 GAACCCA GAT G
TATAGGTTGAACAACAATATGAACTAACCA3473438 GT ACCCCC CGG
AGTGCCAACTTTATATGCCTCAATACAGGG3473553 GAACG CCA GGG
AGCCTTCCCTTTAGTCAAGTTCAGGCATCT3485828 GC ACCCCA AGG
GAGACTGATACAGGGATGATCTGGCAACAG3487071 GAAG CCC-AGG
CACATCCACTGCACCTATGTATCCAGGGCA3489828 G-ACCCC-AGG
ATCTTTTGATACATATGCAGCTAGAGTCAA3490120 GAG CT CCGGGG
GATCACAGGCTCCATAAGAGCCCTTTTCAG3492331 GAACCCCA TT G
ACTCACGTGACAGGCCTAGAAACCTGGACA3493382 C AAT CCCGAGG
GTGAAAAGTTCACGGAAACTTAGTCTCCCG3493422 GAA--CCGTGG
ATTATGCTGACCTTAGGTGGGGCTGCTTTT3494102 GAT CCCA GTGG
GAAGCAGAGGCATGGACTTGCACTACTGGA3496066 GAAG CCC-AGG
AGAGGTAGAAAAAGCAAGCCCTTGTCATTT3500365 GAAG CCC-AGG
ATAAGAAAATAATGGGGATGTAAAGCAACA3520935 GAAA CCCT TGG
GCCTTATTTATAATAGCCAGAAGCTGGAAA3539429 GAACCCA GAT G
ATCCTGTGCCTAATTTGCATATGGAAGGGA3553275 GC ACCCCA TGG
ATAGTGATCAACTCAAGTAAACAAGGGTTT3553480 GAAG CCCT AGG
GTAAGGCATTTATCTAAGGTTCCTCACCTT3561645 GAAT CCCGAGA
GCAGAAACTTAAGGAACTAAGCCCTTTCCA3563948 GAAA CCA GTGG
GTTAGTCTGAAAAAAAAAACCACAGAATTG3567131 GAACCCA GTGT
GTGTCTGGGTTTGGTGGCTGATTATAGGAT3589732 GG AT CCCGGGG
ATTTCAAAGTCTGCAGAAAAATGTCTTTAT3598121 GAACCCA -AGG
GGGGGTGGGGGGCAGCGGGAGAGTGTCTGA3601951 GC T CCCCGCGG
CTTGGGTATGAACTCGGCAGATGGTCTCAA3606430 GAT CCCCA GAGG
TCCCGGAATCACAGGATCAGAGAGAAAGCT3606826 GG ACT CCGAGG
GTCATACACAGCTATTGCAGAGCCACTCCT3617494 GAACCCCC AGA
CACGGATGGGAACCAATACAGAGAAGTTAA3618809 GAA--CCGAGG
CCAAGCCCTGTGGAGCCTAGCAGATCACTG3622991 A AACCCCGCA G
TAGCACATGGCAACCAGGGAGGTTGCCCTA3624393 GAACCA -GAGG
CCCTGTAGGTGCAACATTATGAACTAACCA3626524 GT ACCCCGGA G
CAGGCAAACTTTATATGCCCCAGTACAGGG3626637 GAACG CCA GGG
GTCGGATTCTTCTCAACAGCTTTATTGCAG3627037 GAACCCC-AGG
TTCTCAACAGCTTTATTGCAGGAACCCCAG3627046 GAA-CCC-AGG
GCCTTATTTATAATAGCCAGAAGCTGGAAA3627921 GAACCCA GAT G
TTGGAGGTTTACTGCAACACCAACCAAGAC3640119 A AAA CCCGTGG
CTTGCAAACTTTTTATGCCTCAGTACAGGG3643775 GAACT CCA GGG
CTTGCAAACTTTTTATGCCTCAGTACAGGG3644587 GAACT CCA GGG
GAGATACTTGGTAAGCACAAATCCAGTTAT3649502 GAAA CCCGAGG
CTTGCTGTTGCCAGGAATGGAGTCCAGACA3654929 GAACA CC-AGG
AGAAAGGGAAAGTCAGTTTTCCTTAGAGAT3655287 GAACT CCA TGG
CGTCGAGAGACCCGTTCCACGCAGACACAG3663711 GG ACCCA GAGG
TGTGTGCTACCAGAGACCACACTTGTCTAG3666371 GAACA CC-AGG
TAGGAGCCTCAGAGGTCACACAGGTACCTG3666426 GAACCCCA TA G
ATAGAATTCCAGAGGTGATGCCAGTTCGCA3666480 GAACCCC-AGA
CCAGAACCAAAACAGCAATGCTAGCACCTA3666515 C AACCCCA GAGG
ACCTTATTCATAATAGCCAGAAGCTGGAAA3667317 GAACCCA GAT G
CTTGCAAACTTTATATGCCCCAGTACAGGG3682867 GAACG CCA GGG
AAGGCAAACTTTATATGCCCCAGTACAGGG3685445 GAACG CCA GGG
TGTATATTTTATGGTCTATAACAACATTTG3686017 GAACT CC-AGG
TGTCAGCATTTGGAGGCTGATTATGGGATG3686818 GAACCCCGGGT
GGAGGGAAGGTGCCCGGATGTCTGGAGCCC3692783 GAA--CCGGGG
AAGCATCCGTTATTTCATTCCCTCTCCAGG3694149 GAAT CCCT GTGG
TTACTAAACTGGAAATAGAATGCTAAAATA3695221 GAACCCCA AGA
TTGGCAGAGGGCACTGGCAGAAGTCATGAG3703551 GAG ACT CCGTGG
GAGAGCCCAGAAGGAAAATTAGGACACTGA3707826 GAACCT CT GGG
GAAAAAGTCCTGTAAGACTGTGAGGCCAAA3708180 GAACCA A GAGG
AGATGTTCCAAGGCCTGAAGCAATGCAGCT3717879 GG ACCCA GAGG
CCTATTAAGCACATAGGAAATCTGCCCACA3721193 G-ACCCCGGGG
CACATAGGAAATCTGCCCACAGACCCCGGG3721202 GAACCT A GAGG
ATAGGTGGAACAACAATATGAACTAACCAG3723546 T AACCCC-TGG
ACATAGGTGTTTGCTATTTGGTCCCTCTGA3727966 GAA-CCCGGGC
GCCCTTCATGGGCCCTCCATTAGACCCACT3738825 G-ACCCA GTGG
GCCTCCGGCCGCCTCCGTGTCCTCGGCTCC3741446 GG ACCCCGAC G
CTGACAGCCGCCCGCGCTCCGCGCCGGCCC3741860 GG -CCCCGCGG
CCTCCTCCCGCAGCCTCTCCTCCACCAGCT3742000 G-ACT CCGAGG
TTTTAGACCCTTGACTGTCAAACCAAAGTG3745583 GAACCT -GAGG
AGAAATGACAGAAGGAGCTGAAGGTGTTTG3748729 GAACCCCA TA G
ATTATTCCATGAATCAGCATTTTAAGATCT3749279 GAG CCCCT TGG
CCACCCTTCAGGTTGTAATCACTGGTACTC3750232 C AACCCC-TGG
CTTTTTTCAGAGTATATGCTACAGAATACA3754032 GAACT CCCC AGG
CAAGCATGAGGAGTGGGGTTCTGATTCCCA3756442 GAACCCA GGT G
AAAGAGAAGCTTAGGCACTGGATCTAGGGT3758815 GAACCA -GAGG
AGGTTAAGGACAGTGTAGGCAGCCACAAAA3763469 GAAT CCT GTGG
TGGGTATACTTACCCACACATGCATCTTTA3763788 GAAG CCA GAGG
GGCCTTTTGGAGTACCAGTCTAAAGTCATA3794028 GAACT CCT GGG
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/2/GAACCCCGNGGen |
db : mm39 |
k : 2 |
strand : GAACCCCGNGG |
format : html |
download :
0.006 | 0.006 | search_start;
3.078 | 3.072 | search_plus_done; http://172.18.8.138:28851/match?q=GAACCCCGNGG&k=2&no_gap=0&offset=0&limit=200
6.124 | 3.046 | search_minus_done; http://172.18.8.138:28851/match?q=CCNCGGGGTTC&k=2&no_gap=0&offset=0&limit=0
6.124 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.