GGGenome | Results

CRISPRdirect

— Rational design of CRISPR/Cas target.

2025-06-22 03:36:47, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr1:3108069-3108080

CTCACGTTCCGCGGGGGTCACCTTGGTTAC3108069GAGACCCCGCGGCCAGCGGTCTGCGGGTGAGAGTGTGGAACA

chr1:3627037-3627046

GTCGGATTCTTCTCAACAGCTTTATTGCAG3627037GAACCCC-AGGAACCCAGGAAGGACTGACTCCTTATATATA

chr1:3649502-3649512

GAGATACTTGGTAAGCACAAATCCAGTTAT3649502GAAACCCGAGGGGCTTGGAGAAACTGTAGGGAGCCAACACA

chr1:3686818-3686828

TGTCAGCATTTGGAGGCTGATTATGGGATG3686818GAACCCCGGGTTTGGCAGTCTCTACATGGTCCATCCTTTCA

chr1:3721193-3721202

CCTATTAAGCACATAGGAAATCTGCCCACA3721193G-ACCCCGGGGAACCTAGAGGCCATGGCCTCCCTTCCTGCT

chr1:3947232-3947242

CTTGCAAACTTTATATGCCTCAGTACAGGG3947232GAACCCCAGGGCAAAGAAGTGGGTGGGTAGGGTAGTGGGGA

chr1:4284661-4284671

TTGCATTATTCATGAGGTCTGCTAAGAGCA4284661GAACCCCCTGGTGCTAGCCTTCACAAGGATCAAAGGTATAG

chr1:4593789-4593799

TTCCCAGCCACTGTCCTCTGGGAATTCCTG4593789GGACCCCGGGGAGTCAGTAGCAGAAGGAGCAGAAACTTTTT

chr1:4693670-4693680

GAGTTTTGTGTGGTGATAAGGCCAGAGCAG4693670GAAGCCCGAGGGGCCAGGAAGGAAGTGCTCTCAAGCTTGGA

chr1:4982220-4982230

CCAGTGTTCCCTGTGTGCCCAAGAGCCTGA4982220GAATCCCGCGGCCCCAGCCTCTTCTTAGGTCTGGGTGCATC

chr1:5013702-5013711

CTACCATGTGGTTGCTGGGAGATGAACTCA5013702GAACCCC-TGGAAGAGCAGTCTTAACCACTGGACCATCTCT

chr1:5090494-5090504

CGCCGCAGCTAGCGAAGTAACCCTTGAAGT5090494GAACCCCTGGGGCAGTGCGCCTGAGCTCGGAGGGCTAAACT

chr1:5114565-5114574

AATGTACCTCATGCAGGAGACAGTGGTTCT5114565G-ACCCCGAGGCTTGGAAGCTAGGGGTTTTTATAGAAAAGG

chr1:5281705-5281714

TGGATGTCACACTAGTACTAGGAACTCCAG5281705GAACCCC-AGGTACCTAGAACTGCAGAGACCACTCTGCAGA

chr1:5493845-5493855

CCTGGGGCACAAGCCCCTTCTGCTCCACTG5493845GAGCCCCGGGGTACACCCAGAAGGGCCCACACAGGATTCCA

chr1:5513002-5513012

TTATCTTGAGTCCAGTGCCATCTTTTGAGT5513002GAACCCAGTGGACGGTGCCAAGGCCCCAGAGGACTTTCCAC

chr1:5602980-5602990

CATGGGAAGACCAACAGTGTTAACTAACTA5602980GAACCCCAGGGAGTTCCCAGAGACTAATCCACCAATCAAAT

chr1:5739359-5739368

TATTTACCAATTGGAGCCAACAGGGGGCAG5739359GAACCCC-TGGCATCTTAGATGCAGATGTGTGAATTCCCAA

chr1:5817746-5817755

AATAAGTATGCAGGCCTTTCCAAGGGTCTT5817746GAA-CCCGAGGAAAAGTTTTGGTCAGGGAAAAATACCTGGG

chr1:5975028-5975038

CTTGCAAACTTTATATGCCTCAGAATGGGG5975028GAACTCCGGGGCCAAGAAATGGGAGTGGGTGGGTAGGGGAG

chr1:5982191-5982201

GGATTTCCTTATCTGCCATCACTGGGAGGG5982191GAACCCCTTGGTCCAGAGGAGGCTTGATGAAACAGAATAGG

chr1:6051184-6051193

CATAGAGGAAGCAACAGTGTCAACTGGCTA6051184GAACCCC-TGGAGCTCCTGGGGACTGGACCACCAACCAAAA

chr1:6084078-6084088

CCAATTCCCATTACTAGCATTGCCAACTTT6084078GAACCCCTGGGCAGTAGCTTTGTGTTCTTTTGGCTCCCAGC

chr1:6195563-6195573

GCCTTATTTATAATAGCCAGAAGCTGGAAA6195563GAACCCAGAGGTCCCTTAACAGAAGAAAAGATACAGAAAAT

chr1:6221184-6221194

TTGCGGGTGTCAGGCGACTCCGCTGGCAAG6221184GAAGCCCGGGGCTCGAGTGGAGCGGAAGGGGCTTTTGCCCC

chr1:6221383-6221393

TTGCGGGTGTCAGGCAACTCCGCTGGCCAG6221383GAAACCCGGGGCTGGAGTGGAGCGGAAGGGGCTTTTGTCCC

chr1:6231016-6231026

CTTACTGGGTTCCTTCCCTCAGAACTCAGG6231016GAACCCCGTGGAAGAGGGGGCAAAGAGATTGTAGGAGTAAG

chr1:6239150-6239159

AATAAGTATACAGGCCTTTCCAAGGGTCTT6239150GAA-CCCGAGGAAAAGTTAAGGTTAGGTAGGAATACCTGGA

chr1:6254098-6254107

CAGCCTGGTTTCCAGTTGAGGCTAGATCTT6254098GAACCCC-AGGACCTGGTGGTGATAATTCACTTACATGGGA

chr1:6739582-6739592

TCCCAGAATCACAGGATCACAGAGACAGCT6739582GAACTCCGAGGAGTCCTGACACAACCAGGATCACAGGAAGG

chr1:6868531-6868541

GTAGTGCTCTTTGATTATAGAAGCAGAAAT6868531GAACCCAGTGGTCATAAAAAAATTAGCTGTGCTAAAGAGTT

chr1:7120179-7120189

TCTTCTAGAGGTCCTGAGTTCAATTCCCAG7120179GAACCCCATGGCAGCTCATAACCATCTGTAATGGGGTCTGA

chr1:7125857-7125867

GCATTATTCATGAGAAGGTCTGCTAGAGCA7125857GAACCCCCTGGTGCTAGCTTTCACAAGGCTTAAAGGAGTAG

chr1:7248901-7248911

TGTGGAGATTGATGTGAAGTGGCTCAATGA7248901GAACGCCGTGGAGAAAGTGAACATCAAGCCCCAGGTGGGCC

chr1:7249659-7249668

GACCCAAGAACGAGCTCCACCAAAGAGCAG7249659GAACCCC-TGGAGTTTGAAGGTTCCCGAGAGCTTGGCCTTT

chr1:7276382-7276392

GCCATTCAAACTTCTGCCACAGATCTGTAG7276382GAACACCGTGGCTGACTGCTGGGCACTTTGCACCCCGCCCA

chr1:7278593-7278602

ACTTGTATCCCACGCAGGAGTAGAGGAGTC7278593G-ACCCCGAGGGGAAAGGGGCCCCAGTTTTTATAGGTCTTC

chr1:7420595-7420605

GGCTGCTCTCAGGGCCTCGAGAGTCTCATC7420595GAACCCCTCGGACCAATTTCCTGCAAGATACAAGGAGAGCT

chr1:7673491-7673501

GAGCTGTAGCTTACTTGCGACCCAGTGAGT7673491GAACCACGTGGAGCCTGGATAGATGCAAAATGCAAGAGGAT

chr1:7679467-7679476

AATAAGTATACAGGCCTTTCCACGGGTCTT7679467GAA-CCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGG

chr1:7725437-7725447

AACCTGGCTAAAGAAATGTAATCTATCTTG7725437GAACCCCTGGGGTAGAACAGCCCAGAAAGCTGGAATATGGT

chr1:7841815-7841825

TGAATCTGGGTGAAGAGTATTGAGATGGAA7841815GAACCCCCTGGGAATGATCTCCCACACTCACTGTACATATC

chr1:7890455-7890464

AATAAGTATACAGGCCTTTCCAAGGGTCTT7890455GAA-CCCGAGGAAAAGTTAAGGTCAGGTAAGAATACCTGGG

chr1:7931822-7931832

TTGGGGGTGTCCAGAAACTCCGCGCGCAAG7931822GAACCCCGGTGCTGGAATGGTCCAGAAGGGACTTGTGCCCC

chr1:7972276-7972286

CAGCCTGGTTTCCAGTTAAGGCTAGATGTT7972276GAACCCCGGGACCAGGTGGTGATAATTCACCTACATGGGAC

chr1:8039576-8039586

CTTATACCCAAACAATGGACAGAAGTCAGG8039576GAACCCTGTGGTTTAATTAGGAAAATGTTGTTAGAAGCTGA

chr1:8138766-8138775

ATTAAGCATACAGGCCTTTCCACGGGTCTT8138766GAA-CCCGAGGAAAAGTTAATGTCAGGGAAGAATACCTGGG

chr1:8164939-8164948

AGGAATTAGCATAATCAGGTATTTACTAAA8164939GAACCCC-TGGTGGTGGGTTTAACAATAGACTAGCATTGTA

chr1:8193132-8193141

CCCGGGAATTAACATCACCGGCATTGAGGA8193132GAACCCC-CGGAGACGGGGCAGATTCAGAACTGCAGGGAAA

chr1:8219134-8219144

CAGACTTCATTGTTCCTGTGCCTGCTGGGG8219134GAAACCCGGGGCAAGGAATTAAGGTGTGGGGGTCTCTCCTG

chr1:8227210-8227219

AATAAGTATACAGGCCTTTCCAAGGGTCTT8227210GAA-CCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGG

chr1:8262559-8262569

TATGAGGGACAAGTTAAGATTATGTGTTCT8262559GCACCCCGAGGTATTGTAGCCATTTCTCCTGGAGATCGCAT

chr1:8319336-8319345

CACGTTCCGCGGGGGCCACCTTGGTTCCAA8319336G-ACCCCGCGGCCGGCGGTCTGCGGGTGAAAGTGTGGAACA

chr1:8628591-8628601

TTGCATTATTCATGAGGCCTGCCAAGAGCA8628591GAACCCCCTGGTGCTTGCCTTCACAAGGTTCAAAGGTATAA

chr1:8681144-8681155

TGATCTGGTATTTGGTGAGAGAAAAGAACT8681144GAAGCCCCGAGGGGCGAGCAGAAAGAATGGAAACAGGCAACT

chr1:8858205-8858214

AATAAGTATACAGGCCTTTCTAAGGGTCTT8858205GAA-CCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGG

chr1:8964471-8964481

TCGCGGTCCCCCTCGCACCCACGAATAACT8964471GAATCCCGCGGGACGGGATATAGTGGGATTGCTTCAAGTTT

chr1:9106605-9106615

CAGACTATGAATTAGTGACAACGAAGACTA9106605GAACCCCGGTGTGACTGAAGAGGTCATAGCAGTGTCTTATA

chr1:9137679-9137689

TGTCTGGGTTTGGTGGCTGATTATGGGATG9137679GAACCCCGAGTGGGGTAGTCTGGTTACTCCATCCATTCGTC

chr1:9383789-9383799

CAACCTGGTCTCCAGTCAAGCAAAGGTCTG9383789GAAGCCCGGGGACTCAATGGGTGGTGATTTCCACCTACATG

chr1:9647596-9647606

TGGCACTGTGGTGGTAGGTAGAGACAAGCA9647596GAACCCCAGGGCTCACTGGTCAGCCAGTTGAGATTCATCGA

chr1:9728626-9728636

TCTCAGTAATTTCCATCTAATTCCCTATGT9728626GTACCCCGAGGCTCTCAGAACTCAGCGGGGGCCAGTGTGAG

chr1:9813809-9813818

GATTACCTTTCTAGTTACCAGAATTATCAT9813809GAACCCC-AGGTGATAAATTTCTTATGTACAACAGTGTATA

chr1:9818191-9818200

TGTCCGCACTCGGTACACTCGATGCTGACA9818191GAA-CCCGAGGCCGGGAAGAAGAGGCGCGCCTGGCACTTGG

chr1:10065884-10065893

AACGTATCTCACACAGGAGACAGTGGTTTC10065884G-ACCCCGAGGCTTGGGAGCTAGGGACTTTTATAGAAAAGG

chr1:10074097-10074107

CTTTCCTGGAATTTGCTGCGTCTTCTTCCT10074097GAACCCTGGGGTTGGAGACCTATGTATGCCAACACAAAGCA

chr1:10109259-10109269

GAATTCGAAGGCTCTGTAGCTGCTTCACCT10109259GGACCCCGGGGTTTTTGCAGTTCTGGAACTATGTAGTCCAG

chr1:10175648-10175657

TCTTTCTTGGGCATTTGCTTACGAGATACA10175648G-ACCCCGGGGAATAAACAATCGCCAAGACACCCTTCCCAG

chr1:10245877-10245887

TAGATGTTGCAGGATATTTGATCACACTGT10245877GAACCCCGAGACTGTGGTGTGGCTCAGCTTAACGCACACCT

chr1:10289274-10289284

TTCAGTGGAAAAAAATAAATCCTAAATTTA10289274GGACCCCGTGGCTGGAAAGATGGCTCACCAGTTAAGAACAA

chr1:10335304-10335314

GAATTCAGTACAGAAACTCAAACAAAGCAG10335304GAACCCAGAGGCAGGAGCCATGGCAAAGGCCATGGGGGTGA

chr1:10379191-10379200

AGCCTATAAATATTAAAATACCTATATAAA10379191GAA-CCCGAGGCATAAAATACATACAGTATTACTGAAATGT

chr1:10452932-10452941

CACGTTCCGCGGGGGTCACCTTGGTTCCAA10452932G-ACCCCGCGGCCGGTGGTCTGCGGGTGAGAGTGTGGAACA

chr1:10590434-10590444

GCAGCCCCACGTAAGGTTAGCTTATTCTTA10590434GAACCCAGGGGCAAGGGCTTTAAGCCCTTGCCATAATTCCA

chr1:10621145-10621155

GTGTGTGTGTGTGTGTGCGTGTGTAAAGCA10621145GAACCCCATGGCTGGGAGAATTAAGCCATTTACTTCACATC

chr1:10688245-10688254

CCCATGGAAAATTACCCAACTCTATTCTAG10688245GAA-CCCGAGGTCTAAATGTTCCAGCTAACTTATCTTGGCT

chr1:10726452-10726463

AACCTCTGCCCCAATGACTGGCCTAACTGG10726452GAACCCCTGAGGCCCAGGAGACAAAGGAACTCCCACCCAACC

chr1:10727286-10727296

AAACTCTGCCCCAATACTTGGCCTAACTGG10727286GACCCCCGGGGCCTAGGGAACACAGGAACTCCTGCCCAGCC

chr1:10876161-10876171

CATGCGGGCCCAGCTCCTGCAGCCCCGTGT10876161GACCCCCGAGGGTGAGTACATCCCACTGGACCACCAGGATG

chr1:10927504-10927514

CAGTCTGGTTTCCAGTTGAGTTGAGGTGTG10927504GAACCCCGGGACCGGGTGGTGATAATTCACCTACGTGGGAT

chr1:10937335-10937345

ATGCTCTTTGGTTGGTGGTTTAGTCTATGA10937335GAACCCCAAGGGTCCAGGTTAATTGACTCTGTTGGTTTTCA

chr1:10938034-10938044

GGAGGACATCTAAGCCTCGCCCCTGACCAG10938034GGACCCCGAGGCCACACACTATAGCCTTGGGGTTATAGGAG

chr1:11022908-11022919

GTGGCAAGTGCCACAGCGCAGGAAGACTCA11022908GAACCCCAGAGGAGAGGGAGGAAGGAAGGAAAACTGGTCAGC

chr1:11144276-11144286

AGAAGTTGTGTTCCACTCACCAGAGGTCTA11144276GAATCCCGTGGGGAATCCTGTGTGGGCCCTTGCGGGTGTCG

chr1:11308254-11308263

ATCAGAGATGAAAAAGGAGATATAACAACA11308254GAA-CCCGAGGAAATCCTAAATGTCATCAGATCCTACTACA

chr1:11476834-11476844

GCAGTTTCTTGAGTGGGTTCATGACTTGAA11476834GAACCTCGAGGCCATGGGAACATCAGACATGCACAGAAACT

chr1:11487047-11487057

TCTCAACACTGACTTGGAAGCTCAGTGGAA11487047GACCCCCGGGGATCCCCACTGGTCTGGAAGAGAAGATTGCT

chr1:11504477-11504487

CCAAGAGGGCAGACTGAATCTTTTGATAGA11504477GAACCCCAGGGAAGCTTGACGGGCCATGATTTTAGACTATT

chr1:11769298-11769307

TTGGTGCTGTGGCAGATGTTATCCATTTCA11769298GAA-CCCGTGGAATTCAAACTCTGAGCGCTGGGGATAATGA

chr1:11838936-11838946

ACTCCCATGTCTTGCCTCCCTGAGCAGCTG11838936GAACCCTGTGGCAGAGCAGACGCAGGGCCCCATTGACACTA

chr1:12145833-12145843

CCTGGGGCACAAGCCCCTTCCGCTCCACTC12145833GAGCCCCGGGGTACCTTACCAGCGGAGTCGCCCGACACCCG

chr1:12393911-12393921

GCAAGCTGGTCTCTGGATGAGCTAAGCTCT12393911GAACCCCGATGGTCATAATTCACCTACATGACATGACTAGT

chr1:12522883-12522893

ATTGCAAACTTTATATGCCCCAGTACAGGG12522883GAACCCCAGGGCCAAGAAATGGGAGTATGTGGGTAGGGGAG

chr1:12683689-12683699

CCCTGTGGTTATGGAAGTCCAGGCGTTCTT12683689GAACCCAGAGGCTTATTGATTTTTAAAGCTGAATCATGTAT

chr1:12742200-12742210

ACCAAATAAGAGGGCAAAGGTTACCAAATG12742200GAAGCCCGGGGAAGCCAGAAACCAGAACAGCCCTCACAATG

chr1:12761263-12761272

CCCATCCTACTCTCCTTGCCTCCTCCTGAT12761263G-ACCCCGTGGGAGAGAGATCACTTCACAGAAACCCTCTCC

chr1:12827036-12827045

GGTGTCCACAGAGATCAGATGACCACATCA12827036GAACCCC-TGGCACTAGAGTTATAGATGGTTGTAAACTGTC

chr1:13164938-13164949

TTGATCTGGGCTATGCCCCACCTGTAACCA13164938GAACTCCCGAGGATTCCGGCCTGCCTGTTCCGGGAATGGCGA

chr1:13194751-13194760

ATGAGGTCTGCATGAGGCAGAGACCTAGGT13194751GAA-CCCGAGGCAGGAGAGGAAAGGAGAATGAGCCTGGGCA

chr1:13249685-13249695

CCGTCTAGGTAATTAAATGTAGGGCACTTG13249685GAACCCAGCGGCACTGAACATGTTTGCTAAGGGCATCTCTT

chr1:13407377-13407387

AGTTCACATACCTAATTCCAGCACTCTGGG13407377GAACCCAGAGGCCAGCAGATCTGTGTAGCGTCCTGGTCTAC

chr1:13444508-13444518

TGCGTCCCGCGCCCCCGAGCGTGGGCCCGG13444508GAACACCGGGGCTACCCCACCCGCGGGGTCCTCAGCATCTC

chr1:13594211-13594220

ACTGCACTGAAGCACGAGGAATGTACAGTG13594211GAACCCC-AGGAAAACGGGTGGTCAATCTGGAAGAAGAAGC

chr1:13596166-13596177

TTGGGCTTTCCTCTTCCTGCCTGGTGTTCA13596166GATACCCCGAGGGGAAATGGGGACCTCTGACCCCAGTTCCTG

chr1:13787641-13787650

GCCTTTTCTAGGGGTTTGAGGATAGGATCT13787641GAACCCC-TGGTAGGTGCTGGAGATATGTTTCAGTGTAGTA

chr1:13900025-13900034

GAAAAGAGACCGTGAGCAACAACAGCTTAG13900025GAACCCC-TGGTTTACACAGGGGTTTACTTTCCTTATGCAC

chr1:13924897-13924907

TTTGGTTAGACTTGTGACATGCTGGTTTGT13924897GAACCCCAGGGTGTTGCCTGTCTTTGCCTCTCCAGTGCTGG

chr1:13942328-13942337

CCACCTAGCCATTGCCTGTGCAAATCCATG13942328GAA-CCCGAGGAGAGCCTGGTCCCAAGTTCTCTTTCCCCCT

chr1:13984198-13984208

ACTTGCAAACTTTATATGCCCCAGTATAGG13984198GAACCCCAGGGCCAAAACGGGGGAGTGGGTGGGTAGTGGAT

chr1:14230304-14230314

CATGATGAAGCTATTGCCCATGAAATACAT14230304GAACCCAGTGGTTTGAATTCTTAGTGGTTTCCAGTAGTCAT

chr1:14235621-14235632

CGAGGTGCCACCTTAAATCACCTCAGATAT14235621GAACCTCCGGGGTGTCTGTGCAGGTATTTCTAGGCTGAGTTA

chr1:14240986-14240996

CTGTTCTGAAGAATACACATGGTCCTCCAT14240986TAACCCCGAGGGTAGCAGTCAAGCCCGCAGCAGCTATGCAT

chr1:14305683-14305694

CAGAAGTGGCCACCTCCTGTAGCCAGGCAG14305683GAACCCCAGTGGAGAGATAAGGACACCAACCTATCCACAAAA

chr1:14379688-14379698

TTGGAGGGTAAAGATTACAATTTTACGACG14379688GAACCCAGCGGCTTCTAAAGTCCCAGAAACAGTGTTATTGT

chr1:14482534-14482543

TCTAGAATGCTCATAGTTCAGTCAGATAAA14482534GAA-CCCGAGGCTTCCGTGGAAAGCCTACTTCCTTGGTTAC

chr1:14554558-14554567

TGGGAGGGGCTCATGAGGGAGGCCCTATCA14554558GAA-CCCGGGGATCTATAGGCAGTCATGGCTGTTAGGGCAG

chr1:14621400-14621410

ACATTGTACTGTTGTGTAGAGCCTGAAGCC14621400AAACCCCGAGGAACCCACCCTAGTAGCGGCCAGTCATCTTG

chr1:14748966-14748975

AAGGAAGGGGAAGAAAAAAGAAAAATAACA14748966GAACCCC-AGGCTCACTGGCAACTGACTGAGCTTGACATGG

chr1:14759581-14759590

AACGTATCTCACACAGGAGACAGCGGTTTC14759581G-ACCCCGAGGCTTGGAAGCTAGGGACTTTTATAGAAAAGG

chr1:14826362-14826372

GGAAGGGGTGGGGATCGTTTTTTCCCCCCT14826362GAACCCTGCGGTTAGCGGGGCGGGGGCAAGGAATGTTTGCG

chr1:14855455-14855464

AAGAAAATCCAGAAAGAATTCAAACAACTA14855455GAACCCC-AGGTGCTCAAATTAGCTACTTTTCATTATTCTT

chr1:14935208-14935217

CTTGGAATCTTGGCAATGAACTTGTAATTA14935208GAACCCC-AGGAACGGCTTTTTTCCCCCGTAGCACGGCCGA

chr1:14936272-14936281

CAGCAAAAAAAAAAAAAAAAAAAAAAAAAA14936272GAACCCC-AGGAACATATACTCGGAAGTGTTCTATCTGTGG

chr1:15020487-15020496

CAGCCATGCAGATCAATGGTATAGGACAGA15020487GAACCCC-AGGTAAAGATCCACAGACTCACTGTCAACTAAT

chr1:15046967-15046977

AACAAAACACAAACAAACAAACAAAAAATG15046967GAACCCCTGGGGGCGTGGAAGCCGAAGGCCTCTTTAATAAC

chr1:15058264-15058274

TAACCAATGTTCACTAGAGCAGGAGACACT15058264GAACCACGAGGCACCGCTCTAAGGGGCCACCAGTATTGTTG

chr1:15135751-15135761

AGATGCCCATGATCATAGAAGAAACCTACA15135751GAACCCCGAGGAGACTGGACCAAAAAGAAATTTCTCCTGTC

chr1:15376416-15376425

ATCCAAGGAGCAGATTGTAGCATCCAGACA15376416GAACCCC-AGGTAGTAACTGTAGCTTGTGATTTTGCTTTCA

chr1:15378579-15378589

GAACACTCTGGAGTGATAAGACATGATCCC15378579TAACCCCGAGGAAATTGACAGATTCATTATTAGAAGTAAAA

chr1:15389723-15389732

GCATTGGCCGTCTTTAAATGCCATGGTGTT15389723GAACCCC-TGGAATCAGAGCAGATTTGTGTTCTTTCAGGCA

chr1:15554413-15554423

TTAGCAAACTTTATATGCCCCAGTACAGGG15554413GAACCCCAGGGCCAAGAAGTACGAGTGGGGCGGGGGTGGGG

chr1:15624610-15624619

TAGAGGGCTCTCCACCCGACAGGTGCCCTA15624610GAACCCC-AGGAACTTAGGCTCACTGGTGGGTGTAAAGCTA

chr1:15729445-15729455

TTGGTAAGGTTGAGCATGTTAGAAGCCCTG15729445GAACCCAGAGGGGACAGTAGGAATGTCATCGGCTTCCAACC

chr1:15786664-15786674

TACCCTAGCACTTGGGAGGTTGAAACAGGA15786664GAACCCCGAGTCTAAACACAGCTGTCACTACATAGTGAATT

chr1:15818174-15818184

TCCATTAAATCTCTTCCCTCAGGGCTTTAG15818174GAACCCCAAGGAAAAGGAGATGAAAAGACATTAAGACCCAG

chr1:15953654-15953664

CATTGCCTTAAAAACAATCACAAAAACCAA15953654AAACCCCGAGGGAAGCAAGGGAAAGAGCGGCATTTGTGCAG

chr1:15978436-15978446

CCATTGGCAAAATGCTTCTGTAGTGTGCAT15978436GACCCCCGCGGTTCCATCCCTGGCATAAGCACAGACTCACG

chr1:16216848-16216858

AAGCAGATACTCCCAGTCAGCCATTGGAAT16216848TAACCCCGGGGACCCCAATGGAAGAGTTAGAGGAAGGATTG

chr1:16240132-16240142

CCGCCGGCTGCGGGGTCTCGGAACCAAGGT16240132GACCCCCGAGGAACGTGAGGCAGAAGCCTCCCGGGCTGTGC

chr1:16365232-16365242

CCTCAACAGCTGTTGATGTGGTGACACAGA16365232GAACCCCGAGGAGGCATCCTGCTGAATTAACGTTTTGGAAA

chr1:16391233-16391243

CAGTCTGGTCTCCAGTTGAGCTGAGATGTT16391233GAACCCCGGGACCCAGTGATAATAATTCACCTACATAGGAT

chr1:16443436-16443446

AATGTCACACACAGGAGAATTCTTAGCTTT16443436GAACCTCGAGGTTCCCAGCAGTGGTTCCCTATTACTACATT

chr1:16517938-16517948

CAACATTAAGAATTTCAAGATCTTCCTTCT16517938GAGCCCCGAGGAGGCTGATAAGGGCTCCAGAATACTCTCCA

chr1:16809280-16809289

AATAAGTATACAGGCCTTTCCAAGGGTCTT16809280GAA-CCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGG

chr1:16871298-16871307

GTTCTGGTTCAAGAGTTTCACACCGAAGAT16871298GAACCCC-AGGAGATGAAGCAGAAGACATGTAAGGATGTGG

chr1:16895117-16895126

GCAGTATTCATGAAAAGGTCTGCTAGTGCA16895117GAACCCC-TGGTGGTGTGCTTAACAATAGACTAGCTTTACA

chr1:17032692-17032702

GCACCAAATGTGTCCAAGTACATGTGAATT17032692GAACCCCCTGGGACAATGAGCATGATTATTTTCTTCTTTTA

chr1:17132871-17132881

TCTTAAGACTATAAATCAGATCTTCCATGA17132871GAACCCAGTGGAGAGTTCAAGGTCCCCAGAGGACTCTCCAT

chr1:17162014-17162024

GACTTGCGGAGTTTCATGCTGCCGAGAAGG17162014GAACCCCGACGGAAGAGGCCGCCCTTCTTCTTGCCCAGTTC

chr1:17215896-17215906

CGGGCGTGCCTTGTGGGCCTCCAAGCGGCC17215896GGACCCCGGGGGTGCATTCAGAACTGGGGTGCACTAAGTGC

chr1:17219434-17219443

AGCTGTTGGGTTATAATCTTGTCTTAGCAA17219434GAACCCC-AGGTGATTTATATGTGCTGCACAACTTTAGACT

chr1:17275313-17275323

TGTACTTATCACAGTTCACCATGAGGGTAG17275313GGACCCCGAGGCAGGGACTGAAAGAGAAACCGTGGAGAAAT

chr1:17412977-17412987

TGTATGAGTTTGGTGGCTGATTATGGGATG17412977GATCCCCGGGGTGGGGTAGTCTCTGGATAGTCCATCCTTTC

chr1:17471558-17471568

TGTGCCCGATGGGAGATGAAGTATGGCCGC17471558AAACCCCGAGGCCTCCTCTCCCGCCATCTACATGAATTCTT

chr1:17472298-17472307

AAACGAAAGAATCTTACTAAAAGAAACCAA17472298G-ACCCCGGGGCATCATCAGAACACAGTACGCCCACCACAG

chr1:17491798-17491809

ATACTCTGGTCTCCAGTCGAGCTGAGGTCT17491798GAACCCCAGTGGTGATAATTCATCTAAATGACATGGTAGGCG

chr1:17798365-17798375

CTCCAGGGGCCTGAGCCATTCATTTGCAGT17798365GAACCTCGGGGCCATCTCCAGGTACCAGCAATACAGGCATG

chr1:17808345-17808355

TGGGGTGGAGAAGGGGTAGCTCCTGACCAG17808345GAACCCTGAGGTGACACTCTGTCACCCTGGGCTTATAAGAG

chr1:17891050-17891060

ACCCAAGAGGAGTGAAAGGCAAGAAAAAAT17891050GAACCTCGGGGATGAAATCAACCAAGTAGAAACAAAGAGAA

chr1:17945034-17945044

AGAGTCTGGTTTCTAGTTAAATTGAGGTCT17945034GAACCCCGGGACTAGGTGGTTCACCTACATGGTGGTGATAA

chr1:18027808-18027817

AATAAGTATACAGGCCTTTCCAAGGGTCTT18027808GAA-CCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGG

chr1:18192183-18192193

ACTTAGAACAGACATTGGATTGAAGTCAGG18192183GAACCCCGTGGTTGAATTAGGGGAAGGCTGGATGGAGCTGA

chr1:18401379-18401389

TAGAAACCCAAATAAGCTAAATAATAATAA18401379GAACCCCAGGGAAGATGTTTGAATCTTACACAGAAGATAAA

chr1:18587877-18587886

AATAAGTATACAGGCCTTTCCAAGGGTCTT18587877GAA-CCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGG

chr1:18773833-18773843

GCATTATTCATGAGAAGGTCTGCTAGAGCA18773833GAACCCCCTGGTACTAGCTTTCACAAGGCTCAAAAGAGTAG

chr1:18842093-18842103

CACAAAGCCAAACATCAAACTGAGAGAAGA18842093GAGCCCCGTGGAGGAGTTAGAGCAAGGACTGAAGGAGCTGA

chr1:18847456-18847466

GATAGCTGCCCAAATAACTGCAGCAGTTGG18847456GAACCCCCAGGCTCTCAGCAAGCACAGGACTCTTTCGCGCT

chr1:18903498-18903508

CATCTTAGCCATTCTGACTGGTGTGAGGTG18903498GAACCCCAGGGTTGTTATGATTTGCATTTCCCTGATGATTA

chr1:19082426-19082436

GTAAAGCCAGTGTTGGGGAAGTGAAGACAG19082426GAACCCTGGGGATGGCTAGCCAAAGAGCCTAAGCTACTTGG

chr1:19251462-19251471

TTTCTCTATACATCGTGTTTCCCACTCCCT19251462GAACCCC-AGGAGGATCATATTCATGGCAAGAGAAGTTCAA

chr1:19283391-19283401

CTCCCCGCTCTGGGAATCTCCTGCTTGTGT19283391GAGCCCCGGGGCGAGCCAGCTACCTGCCAGGGATGGCAGAA

chr1:19352162-19352173

GTTCACCTTGGAGTTTAAATGAAGACATTG19352162GAAGCCCCGGGGCAACTCAGAGAGATTATATTATTAAAGGGA

chr1:19589284-19589294

TGTCTGCGTTTGGTGGCTGATTATGGGATG19589284GAACCCCGGGTGGGGTAGTCTCTGGATGGTCCATCCTTTTG

chr1:19596506-19596516

TATCTGCGCTTGGTGGCTGATTATGGGATG19596506GAACCCCGAGTGGGGTAGTCTCTGGATGGTCCATTCTTTCG

chr1:19693488-19693497

AATAAGTATACAGGCCTTTCCAAGGGTCTT19693488GAA-CCCGAGGAAAAGTTAAGGTTAGGTAAGAATACCTGGA

chr1:20115173-20115183

TTGTGGGTGTCGGGCGACTACGCTCGCAAG20115173GTACCCCGGGGTTCAAGTGGAGCGGAAGTGGCTTGTGCCCC

chr1:20123434-20123444

ATTTTTTGATACATATGCAGCTAGAGTCAA20123434GAACTCCGGGGTACTGGTTAGTTCATAATGTTGTTGCACCT

chr1:20192040-20192050

GTGTATGTTCTTTGATGGATCAGACTCTGA20192040GAACCCCAAGGGTCCAGCTTACTCGACTCTGTTTGTCTTCC

chr1:20209066-20209076

TAAAATGGGAAAGAGCTAACTGAAAGTAAT20209066GAACCCTGTGGCTACATAAAATTACAAACATGAAGGAGACA

chr1:20455875-20455884

GAGAGAGCATACACTAGCAGCTTGACAACA20455875GAA-CCCGAGGAAACACAAAGCATCATCAGATCCTACTACA

chr1:20473428-20473439

GCGCCTGGTTCCTGGTTGAGCTAAGCCTAG20473428GAACCCCAGTGGCCCTAAAGGGATGACAGGCATTTCATGTGG

chr1:20628869-20628879

TTTCATCCACATAGAGCAGGCCTGCCTCCG20628869GAACCACGGGGCGGATGTCAATCCGATGAGCCAGCAATGGG

chr1:20665047-20665057

TGTCTGTGTTTGGAAGCTGATTATGGGATG20665047GAACCCCGGGTATGGCAGTCTCTAGATGGTCCATCCTTTCA

chr1:20761545-20761554

GGACCTCATGAAATCTGGGGTTGTGGTTCA20761545GAACCCC-AGGAGCTACTGAAGGAAGGGGCTTCATGTGTTG

chr1:20898811-20898821

AGTGCTTGAGGTTACCCACACTCCTATAAA20898811TAACCCCGAGGTTGTGCTCTATAAATAACCCCATGTGTCCC

chr1:21004817-21004827

TTTCCTCTCTTTCCTTCAGGTTGTCTAACT21004817GAGCCCCGAGGAGCCCAGGGCCACCGCTGTCATGACGACTG

chr1:21007386-21007396

ACAGCTCTCCCCGAGGACTGTCTTCTGCAT21007386GAACCCAGTGGAGGAGGCTGTGTTTGAGGAAGGGCTGAGGT

chr1:21049319-21049328

GTTGTTTATATCAGCTTCAATCATTAGATA21049319GAA-CCCGAGGAAACCACTGCATATTAATGTATACAGCTGC

chr1:21060346-21060356

GTGTCATCTCTTTTATTACAAATCATAAGG21060346GACCCCCGTGGAAGTCAGAAAACCTTTCCCTCACCCTGGCC

chr1:21689832-21689842

GCTTTCAGAGTTCTGTAACTTGGTCTCATC21689832GAACCCAGCGGGTCATTTCTTGTTAAGACCCAGAACACTTT

chr1:21715319-21715329

TGTCTGCATTTGGTGACAGATTATGGGATG21715319GAACCCCGGGTGGGGCAGTCTCTGGATGGTCCATCCTTTTG

chr1:21941432-21941441

ACCCGTGGCACCACACCATGAAAATAAATG21941432GAA-CCCGTGGCTACAGACAATGAAACTTTTGATGCCAGAA

chr1:21946252-21946262

GCGTACAGCCAAGCCTGCCGACCCAAGTTG21946252GAACCCTGGGGCTCACACAATAGGACAAAACTAGCTCTGTA

chr1:22142248-22142257

TCTTGCTTAGGTGTATCTTAAATATTTCAT22142248GAACCCC-TGGAAGGCTACTTCACCAATGTGCATTTTACTT

chr1:22203400-22203410

TCCATCAATTCCCTCCCCTTGCACCTCACA22203400GAACCCTGTGGAATGGGAGCCAGAGAGGATAGGAAAAACCA

chr1:22546083-22546094

GAATCGGTAGTTGAAAAATACCAGAACCTG22546083GAACCCCAGAGGATGAAGAGTCACTTTACAAATAAATTTACT

chr1:22718477-22718488

TGATGCTGGGATATCTCATGTTGTGGTGAT22718477GAACCCCAGAGGTAAAATTATTTTCATTGCTAATTCATGGCT

chr1:22728122-22728132

CAGAGCACCAGCTCTCACCCTGCAGGTCGC22728122GACCCCCGAGGAGATCTGACCATTTCACAGGAGCCGCATAT

chr1:22858673-22858683

CAAGATCAGGTACTGAACTGGAAAAGATTG22858673GAACCCTGAGGCATGACATGAAAAGCATACACCAACGACCA

chr1:22967549-22967558

ACCCCAAATAAATAAAATTTGCAGAATAAC22967549GAA-CCCGTGGAATGCTGAGAAAGACAGAAAAAGTAAATTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

Redirect URI : http://crispr.dbcls.jp/detail/en/mm39/1/GAACCCCGNGG
lang : en | db : mm39 | k : 1 | strand : | nogap : | query_string : GAACCCCGNGG | format : html | download : | debug :

0.006 | 0.006 | search_start;
0.215 | 0.209 | search_plus_done; http://172.18.8.138:28851/match?q=GAACCCCGNGG&k=1&no_gap=0&offset=0&limit=200
0.373 | 0.158 | search_minus_done; http://172.18.8.138:28851/match?q=CCNCGGGGTTC&k=1&no_gap=0&offset=0&limit=0
0.373 | 0.000 | cgi_end;

CRISPRdirect | DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use CRISPRdirect in your work, please cite:
Naito Y, Hino K, Bono H, Ui-Tei K. (2015)
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.
Bioinformatics, 31, 1120-1123. [Full Text]