— Rational design of CRISPR/Cas target.
2025-06-22 02:28:50, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
TGATAGAACTCTGTACTAAACATATCTGGT3104147 CCTG GGGGTTC
GCACAGCCCGGGAGGCTTCTGCCTCACGTT3108047 CCGCGGGGG TC
TAAAGTTTTAGGTAAGGCATGGTGATTCCA3178361 CCA-GGGGTTC
TTTCATGGCTGGGGGACTCCTCTTCTACTT3236582 CCACA GGGTTC
GGCAGACAAGGGAGGTCTGCTGGACGCTTT3255473 CCACGGGGC TC
TGTAGGTGGAAATTACCACCCCTCTGGTCC3256274 CA CCGGGGTTC
GTGTAAACTAGTCTATTGTTAAACCCACCA3619764 CCA-GGGGTTC
TACACCAACAATTGTCCTCAAAGACTAGTG3743796 CCCA GGGGTTC
TTGAGCTCCTATAATCCTCATCTCCCACAT3785217 CCACA GGGTTC
TGAAAGGATGAACCATATAGAGACTGCCAC4035957 A CCCGGGGTTC
GCTACGCTGCCTCCGGAGTTCTTTCTGCTC4481991 CCACT GGGTTC
TAAATTTATTTTAAACCTGAAAGTACTTTC4564685 CCACGGGC TTC
CCCAGGTATTCTTACCTGACCTAAACTTTT4629456 CCTC-GGGTTC
TTTTCTACCCAACTTACCTGGACTGTTTGA4664502 CCTCGGGGA TTC
TTGTGCTTTCTGAGGAAGCTCAGCACTGAG4669060 CCTCGGGT TTC
GAGATGTGACATTCGTGTTTTATCCATGTT4826353 G CACGGGGTTC
CCTTTTCTATAAAACCCCCTATCTTCCAAG4859008 CCTCA GGGTTC
ACAGGAGTACTTGTTTTCCAAGCATGAGTG4926639 CCT-GGGGTTC
ATCATTGGAGAAACTCAGACTCACAGAATT5075020 CCACGA GGTTC
GAACCTTCAGTCGCTGCAGCCTCGGCACGT5088857 CCTC-GGGTTC
ACCCAATTTAGAATGTCTGTCTCAGACATA5141113 CCAA GGGGTTC
CCTGGGCCGGGCCGGGCCGGGCCGGGAGAG5153662 CCGCGGGGG TC
GGGCCCCCTGGTTCCTCCCACTCCAAACCC5240967 CCGCGGGGTTA
CAGGGACAAAGGACACCCGCACAACCAGCG5317074 CCT-GGGGTTC
ACTCCTTCAATCTTTGTATAACCTTCCAAT5419987 CCA-GGGGTTC
GTGGTAGAATTTCGCAATAAAACTGTCTGA5437795 CCCT GGGGTTC
GGGGCACAAGCCCCTTCTGCTCCACTGGAG5493848 CCCCGGGGTA C
TATAGGTGGAACATTATGAACTAACCAGTA5499560 CCCCGGA GTTC
TTTACCCCATAAAACCCCCTAGCTTTCAAG5557645 CCTCGGGGTTG
AGGCATCCTGGCACTAGACCTTGGGGAGAG5690624 CCT-GGGGTTC
GCCAAGCAAACTATTTTATTATATTTATTT5834967 CCTCT GGGTTC
TCCAGGTATTCCTACCTAACCTTAACTTTT5880865 CCTC-GGGTTC
TGTAAAGCTAGTCTATTGTTAAGCCCACCA5887138 CCA-GGGGTTC
TCACAACTATAGGTAACTCTAGCTCTGAGT5937478 CCCA GGGGTTC
ACACTGGGTCATTGCAGGACCTCCACAGGA5998255 CCAA GGGGTTC
AAAGTCTTCTTAATTAGAAAGTAATGATGG6047132 CCTCT GGGTTC
TTTGGTGGCCTAACACTGCTGAAGCCCATC6144116 CCACGGC GGTTC
AGATTCAGCACATGGTGTAGCCGCCAGCAG6340339 CCAC-GGGTTC
CGCGCTTTCTATGCTGTCGCCGCCGCCCGG6453079 G CCCGGGGTTC
TCCAGGTATTCCTACCTAACCTTAACTTTT6506921 CCTC-GGGTTC
CAGCGGGGCTGTGCATTTTGCTGCACCATA6554036 CCGT GGGGTTC
ATCCCCTACCCACCCACTCCCCCTTTTTGG6607796 CCCT GGGGTTC
TGGGTTGAAGATTCAGTGTAAAACTCCATA6932235 CCTCGT GGTTC
CTTTGGTTGGTGGCTCAGACTCTGGGAGTG6943547 CCCA GGGGTTC
TGCAGTTGAGATTACAGATGATATGAGTTG7036474 CCAT GGGGTTC
GTGATGGCTAAACTCAGTTGACTACGATCA7053238 CCTA GGGGTTC
GGTTGTGGGTGAGTTGGTGTCCCTATTTTT7094100 CCACT GGGGTTC
GACTTCTTCAATCTTTGTACAACCTCCAAT7136304 CCA-GGGGTTC
CTGTTTAGTCAGACAATAGTAGTAGGTTCT7233269 CCCCT GGGTTC
TTTACCCCATAAAAGCCCCTAGCTTTTGAG7287692 CCTCGGGG-TC
ATTCTCTACCCAACCACTCCCCCTTTTTGG7371493 CCCT GGGGTTC
TCCCATGTAGATGAATTATCACCACCCAGT7409183 CCT-GGGGTTC
CCCGGGTATTCTTTCCCGACATTATCTTTT7424555 CCTC-GGGTTC
ATTTTTTATGTCCTTGGGTCTTTTCCCTTA7581212 CCTT GGGGTTC
CTACTGTGCCTTGTAGGTGAATTATCACCA7739091 CT CCGGGGTTC
TCTCTTTGTCTCTCTGTTCCCACCGGTTCC7840907 CCACT GGGTTC
TTTAGTAGGATCTGATGAAACTTTGGATTT7945591 CCTC-GGGTTC
TAACAAGTAGGATAATATATTGAACCCAAT7952583 CCAG GGGGTTC
TTTTGCCTAATTAACCTTTCCTTTCCATTA7965148 CCTCGGGGTTG
AATACCAGCATCACAAGAAATTATCCCATC7998248 CCACGGGA TTC
CAAGAATTTCACACTTTAGTGTTAATAGCA8041668 CCAG GGGGTTC
TTTCTGACTGTACCATGAACTGATCCTTTG8052325 CCACA GGGTTC
TGGGGGCTGAGAGTATATAAGAGTGAGATG8166656 CCT-GGGGTTC
AAAAAAGACATGTCTAAGAAAAAAGGACCT8194181 CCCCGGGA TTC
TGCCTTCCGTGTCATGTAGGTGAATTATGA8547804 CCTCGGGT TTC
GTGTAAACTAGTCTATTGTTAAACCCACCA8604103 CCA-GGGGTTC
TAACAAGTAGGATTATATACTGAACCCAAT8604832 CCAG GGGGTTC
TGGAGTTTAACAATGACAATATATCAGTTC8664800 CCCT GGGGTTC
TCCAGGTATTCCTACCTAACCTTAACTTTT8731920 CCTC-GGGTTC
TCCAATGTAGGTGAATTATCACCACAGGGT8889678 CCT-GGGGTTC
GAAAGGATGGACCATCCAGAAACTGCCCCA8915346 CCT-GGGGTTC
TGGACATCCACAAGGTACCCACAGGACTCT9163978 CCACGGGG-TC
TCAGCTTCTTCCAGTTTTTCTCTATTTCAA9212042 CCACGGGGA TC
AACTGTTTCTGCACATTTCAAATGTATGAA9222351 CCAC-GGGTTC
ACATTCCTTCTCTAGTGTTAGAATCTGCTT9273984 CCTCA GGGTTC
ATCCCATGTAGGTGAATTATCACCACAGGG9436189 T CCCGGGGTTC
TACCATGTAGGTGAATTATCACCACAGGGT9442799 CCT-GGGGTTC
ATGGGGGCTGAGAGTATATAAGAGTGAGAG9455278 G CCCGGGGTTC
AAGACTCTTACACTCTCTCCACCTCCTCTT9494035 CCACA GGGTTC
TTCCAGGAGCGCCTTCCCAAGGAGAAAGCT9616481 CCCCGGGGC TC
GGGCTGTGGGGGCGGTAACTTCGACAGGAG9680971 CCA-GGGGTTC
TGTAGGTGGAAATTCACACCCACCATATCC9681041 CA CCGGGGTTC
CTCTGGCTCTTACACTCTCTGCCTCCTCTT9855354 CT GCGGGGTTC
TTTTCTGGTATAATTGCTAAGCAATTAAAG9873451 CCAC-GGGTTC
CTCTGGCTCTTACACTCTCTGCCTCCTCTT9932273 CT GCGGGGTTC
CTCACCTACATGACTCCCAGTGCAGTGTGG9967896 CCCCA GGGTTC
TGAGGTGTTTGGGCCTTGGTCTCCGCATCT9979054 CCTCA GGGTTC
AGGCACAACACAGAGTCAACTAACCTGCAC10072117 CCTT GGGGTTC
TTCGAAGGCTCTGTAGCTGCTTCACCTGGA10109262 CCCCGGGGTTT
AGAAACAGGCATTTTCAGTAAATAACACAA10126389 T CCCGGGGTTC
AAGGTATGTCTTGGACAGAGGCATGTCGGG10183275 CCT-GGGGTTC
CCATTCCCTGGGTCAAGCATATTCAAACCA10314197 CCACA GGGTTC
GTATGACAAGATAATTGGCTGGCCTGTGAG10365575 CCACGGGGTC C
GCACAGCCGGGGAGGCTTCTGCCTCACGTT10452908 CCGCGGGGG TC
TAGGTTAGTGACTGTCAATGTGTTCCATCA10583069 CCACGGGGTC C
ATGTCAAAAGTAACCTCAATCTGAGTAACC10624852 CCACGGGGTG C
TCAACACACCTATGGTCAGAGAGGCATCAG10776543 CCCT GGGGTTC
TCCAGGTATTCCTACCTAACCTTAACTTTT10806411 CCTC-GGGTTC
AGGTGGAACAACAATATGAACTAACCAGTA10905757 CCCCGGA GTTC
AGCATGAGGGATCACCTACTGAATTATGAC10938581 CA TCGGGGTTC
TCATACTTCTACCCTGGACTCTACTCTCTG11018159 CCCA GGGGTTC
CGACCACCACCTTCATCTCCTTTTTGTTTT11089950 CCT-GGGGTTC
CCCAGGTATTCTTACCTGACCTAAACTTTT11102298 CCTC-GGGTTC
TGTGGCCTCTGCTGACTTCTAAGTGTGTGG11221771 CCTCT GGGTTC
AAAAGAAGTAAGTCATTAAGAGTTGTTTAC11398493 CCTCT GGGTTC
CCCAGGTATTCTTACCTGACCTAAACTTTT11439369 CCTC-GGGTTC
TGGTCAGCAGGGCTATGAGTGTTTCAGACA11480663 CCACGGA GGTTC
CAACACTGACTTGGAAGCTCAGTGGAAGAC11487050 CCCCGGGGA TC
CTATTCCTTTGAGCCTTGTGAAAGCTAGCA11978166 CCAG GGGGTTC
TCACTTACACCCACTCAGGCCTGTCTGACT12007603 CCCCGGGGTTG
CCCAGGTATTCTTACCTGACCTTAACTTTT12020214 CCTC-GGGTTC
TTGTTTGCTGAGCTTGATGCTAATGTGTGT12076704 CCTT GGGGTTC
GTTGCAAGAAAATACAGCACATTTAGGGGA12081630 CCA-GGGGTTC
GGGGCACAAGCCCCTTCCGCTCCACTCGAG12145836 CCCCGGGGTA C
GCTGGGAGCTGTCCTGATTAGAGTAGCTCT12154721 CCTCT GGGTTC
ATCTACTACCCACCCACACCCCAGTTTTGG12227745 CCCT GGGGTTC
AGCACGGGACACATGCTAGATTACACACTT12361247 CCCCA GGGTTC
CAAAAGGATGGACCATCTAGAGACTGCTGC12522516 CCCCGGGGA TC
AATGTTCTGTTTATCATTCCATATATATTG12561500 CCAG GGGGTTC
TATGGAAGTGAGAGAAGGGATCAGGAGATC12622191 CCTCC GGGTTC
TGTAAACCAGAGAGGCAGAAACAGCTCTGT12773186 CCTT GGGGTTC
CCAATACGAATGTAAAAGGCAACCCTTCTG12865302 CCACGGGT TTC
GTTTGTTTGTTTGTTTAGTGGTTTCACAAA12896909 CCTCGGGGTTG
GCTGAGAACCACACAGGTAAACCAGTCAAT12913141 CCA-GGGGTTC
AATTAACTGGTCTAACAACACTGATCCTTT13058967 CCA-GGGGTTC
ATTTTCTGTATCCATTCCTCTGTTGAGGGA13106757 CCTCT GGGTTC
GACGCATGTAGGTGAATTATCACCACTGGG13134989 T CCCGGGGTTC
GTATAAGTGTTGGGAGTATGGTGCCTGTTG13137015 CCTCGGGT TTC
TGAGAAGTTAGGCGTTAGACGCTTCTGAGG13198218 CCCCGGGGG TC
GTAAAGGTGCTCACTTGCCAAGTCTGGTGA13208353 CCT-GGGGTTC
CTGCCTTGGGGAGAGCACGGAGCTGGCTTG13245257 CCCC-GGGTTC
AGACCCCAGTGCATTATCAGCTCAGCACAT13378314 CCTCA GGGGTTC
AATAGGAACCCCAGCTCAGCAGGCCAGAAG13437475 CCT-GGGGTTC
GTGGGCCCGGGAACACCGGGGCTACCCCAC13444528 CCGCGGGGTC C
TTGGACGAGCGGCCGTCGGCGGGCAGGGGG13659482 CCACC GGGTTC
AATAGCTAAGCTGGGGAGTTCACTTCCTAT13904579 CCTCT GGGGTTC
GCCCTGGCTTCAGGCAGGGGTCCGTACAGC13934967 A CCCGGGGTTC
AAAATAGAATGAGCACGGTGGATCGGAGTA14025157 CCACC GGGTTC
AAGTGGTAACTGTGGGCTTCAAGGCAGCAG14410549 CCTCT GGGTTC
TCATCATGCTTACTTCTGGACCAAATCCTG14475963 CCTCT GGGTTC
CTTGTGAACTCTGTGGTTGGTGGTCCAGTC14538375 CCCCGGGA GTTC
GTGGCTAGCAGAACCAGGAAAGGTCCTTCC14687725 CA TCGGGGTTC
CCTCATCATGAGTCTGCACACATGCCTTTG14810215 CCTCGGGGA TC
GCCTCAACTTCTCTCCGTGACCCCTTCAAT14820253 CCT-GGGGTTC
CCTGTACTGGGGCATATAAAGTTTGCAATA15033903 CCACGGGG-TC
ATGGGGGCTGAGAGTATATAAGAGTGAGAG15143099 G CTCGGGGTTC
AATGCTTGGTTCCAGTTGATGGCTCTGTTT15203025 CCA-GGGGTTC
CAGGCTGCAAAGTCCTCTGAACACTCAACT15274908 CCA-GGGGTTC
CCAGCCCTTGGTTCCTGTGTCCTGAGGGTC15353055 CCACGT GGGTTC
CACCCCTGTGGGCCGCTTCTTCATGGAGTA15359226 CCTCT GGGTTC
ATCCACTACCCACCCACTCCCCCGTTTTGG15626683 CCCT GGGGTTC
TTTCTCTGTCTCTGGAAGTTTCCCAGTAGC15694269 CCACGGT GTTC
CAGGCAGCTTCTCTCTTCAAATCCCCCGTG15830578 CCTCGGGGTA C
CCTGGGATTCCCGGAGCTACCTTGCTAAAG15874040 CCCCGGGGTTA
GCTATAGCTTTGAACCTGTGAAGGCTAGCA15885151 CCAG GGGGTTC
TTGGCAAAATGCTTCTGTAGTGTGCATGAC15978439 CCCCGC GGTTC
CTGGGCTCTGCCTTCCTAGTGTCAGCCCAA15979968 CCACGGGGC TC
GAAGTCTACCCTTGAATTCTATCTTTGTTC16032045 CCACA GGGTTC
GAGAGGTAATGCAGGGGCCAACTGAACCTC16037934 CCTCGGT GTTC
GCCTATCATGTCATGAAGGTGAATTATGAC16112996 CA TCGGGGTTC
TCTTAAGGCTCATTTCAAACACTACGTTTT16134752 CCAG GGGGTTC
GGCTTACCAATGATTGGCTAGATTGACTAG16224877 CCCCA GGGTTC
TGGGGTGTATATAAGGAGTCCTCCCTGGGT16285495 T CCCGGGGTTC
AACCCACTCACCCACTCAACCAGATAAAGC16313639 CCCCA GGGTTC
TAACAGTGCAGGGTCACCTTGGGACCTCCA16349284 CCAA GGGGTTC
TGTAGTAGGATATGATGATGTTTTCGATTT16390015 CCTC-GGGTTC
GTCACACACAGGAGAATTCTTAGCTTTGAA16443439 CCTCGA GGTTC
CAAGCAGGCAGCAGGGCTAGGCAGCTTCAG16538955 CCACGT GGTTC
GGAGCTACTTAGTTCCCTTATACAAAAAGA16606176 CCACT GGGTTC
CGGTGCGGGCCTGGGAGGAGCAGGCCTCGA16735839 CCTCGGGGTC C
GCCAGTGCTGCTCTGCTTGCTTCCTCTAAG16763304 CCCT GGGGTTC
AGCATCTCAAAAGGGTGAGGGTGAGGGTAG16961258 CCA-GGGGTTC
ATGGGGACTGAGAGTATATAAGAGTGACAG17205754 G CCCGGGGTTC
CCTGGTTGATTGCTCAGTTTGTCTGAGAGA17388599 CCTCA GGGGTTC
AGCACCCTGAAAATGCAATTCCTGCACTAT17563200 CCTCGGT GTTC
CCCAGGTATTCTTACCTGACCTAAACTTTT17596485 CCTC-GGGTTC
GCCTACCATATCATGTAGGTGAATTATAAC17705154 CA TCGGGGTTC
CAGGTGTCGGGCGCCTCTGCTGGCAAGGTA17756236 CCTCGGGGC TC
TCATTTCACCTTGTCCTGGGGACGCCCTCC17798164 CCGCA GGGTTC
TGTAATGCTAGTCTATTGTTAAGCCCACCA18002382 CCA-GGGGTTC
CCTCATCCAATTCTGCCTCCGAGGCAGGAT18012719 CCA-GGGGTTC
TGAAATTGCCCTCCTCCTCAGCTAATTCAA18355972 CCACGGGGTC C
AATATGTGTAGAGTGTTAAGTCACACAGTA18664124 CCA-GGGGTTC
TGGAGAGTCTTCTGGGGCCCTTGGCGCCCT18813766 CCGCT GGGTTC
GGGGACCCATATATTCAAAGCAGCTGTGTT18824656 CCTCT GGGTTC
TGGAGAGTACTCTGGAGCCCTTAGTGGCCT18990506 CCACT GGGTTC
AAAAGTCATGAGATTACAGGAGGACTCTGC19175317 CCACT GGGTTC
CCCAGTATACCTGAGGCAAAGACAGACAAA19267611 CCA-GGGGTTC
AAGTCTGGAGCTCAGATCCACCTCCTGAGT19386358 CCCCGGGG-TC
ACCTCCTGAGTCCCCGGGGTCAGTGCCCTC19386377 CCTCGA GGTTC
CTTAGGTTGGTGGTCCAGTCCCCTGGAGTT19456504 CCA-GGGGTTC
GCCAGAGAGTTGGTTAATCTAGAAAGAGAA19678838 CCT-GGGGTTC
TCCCCTACTCCTTCTACCTCCCCTCACCTT19814138 CCACA GGGTTC
CAGGCATTGCATATATTGCATGTCTTTGTT20052408 T CTCGGGGTTC
TGGGTGTCGGGCGACTACGCTCGCAAGGTA20115176 CCCCGGGGTTC
GGTGTTGGGCGAGATTCTGCTGGCAAGGTA20172696 CCTCGGGGC TC
AGGTGCAACAACATTATGAACTAACCAGTA20174216 CCCCGGA GTTC
ATTGTAGAGGCAGGAGGTGTCTGAGACCCT20307420 CCTCT GGGTTC
CTTCTAAACCAACTAAGCACATTTAAAAGG20358968 CCT-GGGGTTC
CAAAAGCATGGACCATCCAGACACTGCCCT20375275 A CCCGGGGTTC
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/1/CCNCGGGGTTCen |
db : mm39 |
k : 1 |
strand : CCNCGGGGTTC |
format : html |
download :
0.006 | 0.006 | search_start;
0.090 | 0.084 | search_plus_done; http://172.18.8.138:28851/match?q=CCNCGGGGTTC&k=1&no_gap=0&offset=0&limit=200
0.130 | 0.040 | search_minus_done; http://172.18.8.138:28851/match?q=GAACCCCGNGG&k=1&no_gap=0&offset=0&limit=0
0.130 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.