— Rational design of CRISPR/Cas target.
2025-06-22 05:03:50, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
AGGTGGAACAACAATATGAACTAACCAGTA3050553 CCCCGGA GC TC
TTCTTTTTGTTTCTACTTGGTTGATTTCAG3061022 CCCCGA GT TTC
ATTTAACATCAGCAGAAATATTAGTGTCTC3066461 CCTA GGGC TTC
TGCTCGAAATAAGTCATGAACTTATGTGGA3068023 CCCCT -GGTTC
GCACTGCTCATGGTGTTACTCTACTGACTT3069267 CA TCT GGGTTC
ATGCTCACATCTATGGTTCCTGATTTCTTC3072278 CCTA GGGT TTC
TGAGTGATGTGATCACTTTTTGAGAAGGTT3078652 CCAT GGGGTG C
TTCATACAGTCTTAAGGGCTGTCGTGAAGA3082488 CCACA GT GTTC
CAGACACCCCCAAGTTCCCTAGAGGACTCT3084961 CCACGGGA -TC
ATCCCCTACCCACCCACTCCCCCTTTTTGG3085081 CCCT GGC GTTC
TTTTGATACATATGCAGCTAGAGACAAGAG3085194 CT CCGGGGTA C
AATTTCTGTATCCATTCCTCTGTTGAGGGG3085832 CA TCT GGGTTC
TACAGTTTTAGGTCCGGCATAGTGATTCCA3086860 CCA-GA GGTTC
ATGCTGGCATCTATGGTTCCAGATTTCTTT3090238 CCTA GGGT TTC
AAATACCATGGTGAATGGTCTTTTATGTGT3097582 CT TCT GGGTTC
CCTTAATTTGTTTTTTTTTTGTGTGTGTTT3097937 CCAG GT GGTTC
TCAAAATGGGCCAGTGGTTAAACCCTGTAG3099391 CCT-GGGGTTA
CAATAAGAGTCACATACAGTTGCTGTAAAC3100467 CT GT GGGGTTC
AGATAAGGCCCCTTCAGTTCCTTCAGTCTC3100795 CT TT GGGGTTC
TGATAGAACTCTGTACTAAACATATCTGGT3104147 CCTG GGGGTTC
AGCTGTTGCAGCTGGCCAGCAGCTCACATG3105803 CCT--GGGTTC
GCACAGCCCGGGAGGCTTCTGCCTCACGTT3108047 CCGCGGGGG TC
GCTGCTCCTGGCACAGAGGCTTGCACAAGG3115026 CCT-GT GGTTC
AATGTCCTCATGTAATTACAGCGAGTGGGT3115619 CCTCGT GT TTC
ATTGGTCAGCCAGTCTAGCCAAATTTGTGA3119872 CCTCC A GGTTC
TACAGCTTTAGGTCAGGAATGGTGATTCCA3136933 CCA-GA GGTTC
ATGCTGTCCCTGTGCCCTCTAGTGAGTCTG3138400 CCTA A GGGTTC
AATTGGTAATAGTCTTGAGTTTTGGAGATA3141331 CCTG GGGT TTC
TTTTGATACATATGCAGCTAGAGTCAAGAG3158101 CT CCGGGGTA C
AGGTGGATCAACATTATGAACTAACCAGTA3161673 CCCCGGA GC TC
TTATCCGTAGGTTTGGTCTTCTCATTTTGT3163694 CCT-GGGT TTC
GTGGAACAACAATATGAACTATCCAGTACC3166889 CCCCA GA GTTC
AAGTTAAATAGTGACTCCCCAGAGCACCAG3167324 CCT-GGGT TTC
AGGTGGAACAACAATATGAACTAACCAGTA3170005 CCCCGGA GC TC
TCCCCTACCGAACCATTCCCACTTTTTGGA3176577 CCT-GGA GTTC
TTTTGATACATATGCAGCTAGAGTCAAGAG3176689 CT CCGGGGTA C
ATTTTTTGTATCCATTCCTCTGTTGAGGGG3177329 CA TCT GGGTTC
TAAAGTTTTAGGTAAGGCATGGTGATTCCA3178361 CCA-GGGGTTC
CTATCAGCAGACCTGGGAGACTAGCTCTCT3182225 CCT-GGGT TTC
CTCGGGTCCCAAGTGATTGGATTGGAGCAG3182517 CA GCGGT GTTC
TTGTTTCTTGCTATTTTTATACACCTAACT3187931 CCAC--GGTTC
GCCTGATTGGTGGTCCAGTGCTTGAGAGAT3196252 CT CT GGGGTTC
CTCCCCTGCCCACCCACTCCCCCTTTTTGG3206923 CCCT GGT GTTC
TTTTGATATATATGCAGCTAGAGTCAAGAG3207036 CT CCGGGGTA C
GTTTTTCTCTTTTCTCCTATCTTAAACTGA3216875 CCCCGGGC A TTC
AAAAAACTTTATCTGCAAAGCCGAGAGCTG3221740 CCACGT GT TTC
TTTCATGGCTGGGGGACTCCTCTTCTACTT3236582 CCACA GGGTTC
CAAGTGTTTTTCTTTAAAAATTGCTTATTT3238480 CCT--GGGTTC
AAAGTGATGTATACTACCAACAGAGTATAC3240070 CCTCA GGGTTG
AGGACTCACAGGTGGTCTGCTACAGCCAAG3242125 G CT-GGGGTTC
GGCTGTCCCGAGGCTTGAGTGAGGGTCTCC3247256 CT TCGGGGG TC
AGGTGGAACAACATTATGAACTAACCAGTA3250526 CCCCGGA GC TC
GGCAGACAAGGGAGGTCTGCTGGACGCTTT3255473 CCACGGGGC TC
AGGCTGTGGAGGCGGTAACTTCGAAAGGAT3256204 CCA-GGGGTC C
TGTAGGTGGAAATTACCACCCCTCTGGTCC3256274 CA CCGGGGTTC
CAGGTTCTCCCAAATCAGCTAATGTCATCC3256530 CCAA GGGGTC C
ATTTTTGCATCTATGACTCCTGATCCCTTT3258961 CCTCGGT T TTC
TGTTTTGCTTCTCTCTCACCATAAGAATAG3268847 CCACA T GGTTC
CATGGTTCGTTTCTTGTTGTTTACAGTTGT3268880 CCCCA GGT TTC
TACAGACATACACGTTTTCCTTGACTTAAG3281510 CCACGT -GTTC
GAAAGGATGGACCATCCAGAGACTGCCCCA3295420 CCT-GGGA TTC
CTGTGACAATAAAGGAAGTAATTCACTGTT3296173 CCA-GGGG-TC
CTCCCCTACCCACCCACTCCCCCTTTTTGT3308224 CCCT GGC GTTC
ATTTTCTGTATCCATTCCTCTGTTGAGGAG3308976 CA TCT GGGTTC
TAAAGCTTTAGGTCAGGCATGGTGATTCCA3310008 CCA-GA GGTTC
ATGCTGGCATCTATGGTTCCAGATTTCTTT3313393 CCTA GGGT TTC
GCTTTTCCTCTATTTTCTAGTGACCTGCCT3319346 CCTT GGGGTG C
TTAAAAGAATCATATTTTGACCTCAATTAG3323082 CCTT GGGGTTG
GAAGGAGTAAAGAATCTAAAAACACCTATA3327108 CCTCT GGGTTA
GAAAGGATGGACCATCTAGAGACTGCCCCA3332457 CCT-GGGGA TC
TCAGCTTCTTCCAGCCTTTCCCTAATTCAA3358940 CT GCA GGGGTTC
CTTCACATAGGATCCTTGAACTAGTTCTGC3360254 CCTT GGGGTTT
ATATAGCCTGCTGCCAGTATTCCTTAGTGG3366021 CCT-GT GGTTC
ATTTTTTTTTTCAAGTTATTCCCTCCATTT3366373 CCTCT -GGTTC
ATTGCTCATATAATTAAAAATATCGTCGAG3372006 CA CCGGGGTG C
CGACACCCGCAAGGGCCCACACAGGATTCC3372065 CCACGGGA TC C
GGGGCACAAGTCCCTTCCGCTCCACTCGAG3372205 CA CCGGGGTG C
AGGTGGAACAACATTATGAACTAACCAGTA3378921 CCCCGGA GC TC
AGGTGAGAGAGCAATCTTGTGTCCCAGGTC3381937 CCTCGGA GA TC
GGGAGTCAGTTCTTTCCTTTCACCCAGGAT3388224 T CTG GGGGTTC
AGAATGCAAACTCCTGTGTTGTTTTGGGAA3389673 CCACT GGG-TC
AATTAACTGCTCTCCTCTGTTTCTGTGTAT3391241 CCAG GGGC TTC
CATTAGAGAACTTCTAAACATGAAAAACAA3414861 CT TCA GGGTTC
GGCGGCCTCAGCCTCAGCAGCAGCGGTCGC3415075 CA TCT GGGTTC
TGCCTGGTTGGTGACTCAGTGTCTGGGAAA3421531 CCTT GGGGG TC
CATTTTGGTCTGGGTATATCTGAAATTCTA3425888 CA TT GGGGTTC
AAGAACCATGTGGCCTTTGGTTATCCCAAT3426215 CCTT -GGGTTC
ACAAAGGATACTCAGAGTGTCCACCTCATT3439692 CCTCT GGG-TC
GAAGACTGTCAGCTAGAGTTCTTCAGCTTT3440979 CT CCGGGC TTC
TCATGCTATATATTTGTGCATTAACCACTG3443587 CCTCA GGGTTA
TTTATTATTATATTGTATGTTTTTTAATTG3445199 CCA-GGA GTTC
CTCTTGTTTCCTTCAGCTAGAATGTGCTCT3453052 CCAA T GGGTTC
TGTCTCTGGGGCCACATTTCCTGAATATAA3463803 CCCCT -GGTTC
GACCTGTGATAAATACTTAGATGATAACTG3469193 T CAC-GGGTTC
ATAAGTGGTGCAGAATTTTGGAGCTCAGTC3471795 CCAA T GGGTTC
GAAAGAATAGACCATCTAGACACTGCCATA3473187 CCT-GGGGA TC
GTTGAACAACAATATGAACTAACCAGTACC3473443 CCCCGGA GC TC
AACAGAATTGTTCATAGGATGATTGAGCTT3475507 CCACGGGA -TC
TGTCACTGTGAGCTGAACCAGAGAGCTCCA3476184 CCTT GGT GTTC
ACTGCATGTTAGGGAAGACAGAGCCTCCAT3482210 CCA-GGGG-TC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCCC3483309 CCTCT GGGC TC
GAGGAGTTTTGGGAGGCAAGAGTGGCGAAA3483731 CA GA GGGGTTC
CCTGGTTCTTTTCATTGTCAAGGATGGAAT3484147 CCA-GGGC TTC
TCATTGATCACCTAGAAATATGGCACAGGT3488336 CCT-GGT GTTC
ACTTCCCTACCCACCCATTCCCATTTTTTG3490010 CCCT GGC GTTC
TTTTGATACATATGCAGCTAGAGTCAAGAG3490123 CT CCGGGGTA C
ACCATGTCCTGGCATTTTTTTTACATGAGT3492919 A CTG GGGGTTC
TGGAACTATAGCAAGGGCATGAAGCCCTTG3494057 CCCCT GGC TTC
GTCACCAGATCAACTGATATTGGCCACAAA3526005 CCT-GT GGTTC
TTCTTTTTTCCCTCAAGATTGCTTTGGCTA3534155 CCT-GGGG-TC
CCATGGTTTCTTTTGTTTGTTGGCTGGCAT3537157 CCCT GGGC TTC
TTATTTCTACCAGACAAGCATGGGGCTGTT3538397 CCTCGGT GTC C
CAACTTTTGCTACCAGCCCTAAAGGAATCA3540330 CA GCGGGGTTG
GAAAGGTTGGACCATCCAGAGACTCCCCCA3542924 CCCT GGGGTC C
GGAAAGGTTGGCTAAGGAAGCTGTCTTTAA3544654 CCA-GGGA TTC
ACATTCAAATATGGTGAGTAATGATAAAGA3553761 CCTCT GGC TTC
AATGTGGCTCCTTGTTAACACAACAAATTA3556345 CCACA GGG-TC
TCAACTTCTTCCAGTCTTTCCCTAATTCAA3560764 CCACA GGGGTTT
TCCGCTGATCCAGTCCTTCTGCCAGGTCCC3561443 CCACA GGGTC C
CTGTTGCCTGTTTTCATTCACTCTGCTGGC3561753 CCTCA GGGA TTC
CAACCTGAATCCTGAGTTATGAATCTAAAG3563717 CCCCA GGGTTT
TTTAGTAAATTCTTTGACTGAAGCTTAAAA3564446 CCTCA GA GTTC
ATTAAATACCTCCTGTTCTTATAGTTCTCC3565060 CCAA GT GGTTC
TTCATAGGCAGTGCCTGAAGGGAGAGAAGT3566448 CCTCT GGGGTTT
TCACATTCTAGTCACTGTGATTTTAGAAAA3567579 CCT-GGGG-TC
CTCCCCTACCCACCCACTCCCCCCCTTTGG3569837 CCCT GGC GTTC
ATTTTCTGTATCCATTCCTCTGTTGAGGGG3570589 CA TCT GGGTTC
TAAAGCTTTAGGTCAGGCATGGTGATTCCA3571621 CCA-GA GGTTC
CAAAGTAACTAATACATCCAAACAGCATGT3573691 CA TT GGGGTTC
TCAATAATGAGTCATTGATTTGATTTGAGA3578113 CCTCT GGC TTC
TTTGCCAATTTCTAACTTGGCAACCTTCAG3579066 CCAT GA GGTTC
TGCTAATGATTTCACAACAGAAGCAAATGG3579415 CCAT -GGGTTC
TTAAAAAACTATTTTTATAGAGACTACCAT3579965 A CCCGGGGA TC
GTTTTCTGTACTCATTCTTCTGTAGAGGGA3590108 CA TCT GGGTTC
CCACCTTCTGTTTATTCTTGCTTCTGTTTT3594530 CCCT GGGGTTT
GAAAATTAAATTCATTGACTAGTTTACACT3595911 CCTCT GGGC TTC
CAGACCGGGTCTGGGGCAACAGGCGCATCG3602061 CCGCC GGGC TC
AGCTAATGGAAAGTCTTCCAGCACAGAGAG3605039 CCTCA GGT TTC
AGCAAGCACACAGGAGCCCTGCCTTACTAG3606578 G CTC-GGGTTC
AGTTTCCTGTGGGTTTAAAAAATACCATTG3613562 CCT--GGGTTC
GTGTAAACTAGTCTATTGTTAAACCCACCA3619764 CCA-GGGGTTC
AGAGGTCTGCTAACCTTCAGGTCTCAGAGA3621603 CCACA GT GTTC
TGTAGGTGCAACATTATGAACTAACCAGTA3626527 CCCCGGA GC TC
TTGTGGATGCTCCATTATCACCCATGAATT3630284 CCACA GGT TTC
GGAAGATGAGCAGAGTCAAGTAACCTAGAC3636051 CCTT GGGGC TC
ACTTGATGTGCCAGGGTGTGGAGGGGATAA3636300 CCAG GGGGC TC
TTTTTCCTATCCCACTTCTCCCCGGGCCCC3637739 CCTCC GGGG TC
GGATATTACACTAGGTTATGCCTGAGAAGA3653972 A CTCT GGGTTC
AATCTCCAGGCTGACATTGGACTGTGAGAA3654282 G CTG GGGGTTC
TCCTGCTCCAGGGGTAAGGAAAGAGCACTG3654321 T CT-GGGGTTC
CATGAAGGTGGAAGTCACTGCCCACCAGGT3655085 CT CT GGGGTTC
ATCAGTGGATCTTAAAAATGATTGCCCATG3664146 CCACA GGGGTA TC
GTTATCATTAAGGTGGGAGCATGGCAGTGT3672255 CCA-GA GGTTC
TTTCACAATATTAATTCTACCAGTCCAAGA3672952 G CACGGGGTG TC
CAGCATTTGGAGGCTGATTATGGGATGGAA3686821 CCCCGGGT TTG
GTGATTGGGTTACCTCACTCAGGATGATGC3687084 CCTCGA GGTC C
TACAACTTTAGGTCAGGCATGGTGATTCCA3688232 CCA-GA GGTTC
ATGCTGGCATCTACGGTTCCAGATTTCTTT3691601 CCTA -GGGTTC
AAAATTAGGACACTGAGAACCTCTGGGATG3707840 CCACGT GGGA TC
TCAATGGGTGATAGTTCTGCTCAATCCACA3708584 T A GCGGGGTTC
GAAATCAGTGGACTGTGGGTCTCCATTCTG3713079 A CAG GGGGTTC
TCAAGTGTGGGTCTGATTGAAAGCCAATTC3714653 CCTA GGGT TTC
ACTCAGATATCTACCTGCTTCTGCCTCTGC3717348 CA CCGGA GTTC
GGGAGCCAACTCTATTATCTTCTATATGAA3718171 CT AA GGGGTTC
CTTGCATGGGTGTGAGAGTATTCTGTTCCC3719354 T CTA GGGGTTC
GTTATGAGCATTTGCTGCTCTTTCAAAAGA3719935 CCT--GGGTTC
AGACAGCGTAGGGCTACTGGGACTGTGATG3720608 CCAT GT GGTTC
TATTAAGCACATAGGAAATCTGCCCACAGA3721195 CCCCGGGGA A C
AATAGTACTATCTCCCTTAGAAATATAAAG3732103 CCTCGGGA GA TTC
CTACTCCAGCGCCCGCTCGCCCGCCGCCGC3741722 CCGCGGGGC TG
CGCCGCCAGCAGCAGGAGCAGCAGCGGCCG3741919 CCGCGGA GC TC
TACACCAACAATTGTCCTCAAAGACTAGTG3743796 CCCA GGGGTTC
GGGAAATCTGAAACAGCCCCATGTCCCACA3746722 CCT-GGGGTTA
ATTCCATGAATCAGCATTTTAAGATCTGAG3749282 CCCCT T GGTTC
TCCCTTCGGTCCTGGGTCTGGCTGAGCCAC3761711 CCCCGGGA C TC
TCCATGAGGCCCAGAGATCGACCCCCCATG3761829 G CT-GGGGTTC
TACAGCTTTAGGTCAGGCATGGTGATTCCA3767517 CCA-GA GGTTC
GGTATCTGTCTAGAAATTTGTCCATTTCAT3768826 CCA-GGGT TTC
GAAATACTGGTGTGACCAAGCTCCTTTTAT3771414 CCT-GGGA TTC
AGAGGAGCTGCTTCTAGTAAAAGGAGGGAA3777503 CCACT GT GTTC
TGACTGTTCTGCTGCTTTGATTGACATCAT3777999 CCAT GGGA TTC
CGATTTGACTTTTTATATGACCGAGGACCA3781164 CCAT GGT GGTTC
TTGAGCTCCTATAATCCTCATCTCCCACAT3785217 CCACA GGGTTC
GGTTCTACCCTAGGTCTCTGGCCTATCCAT3785420 CCTCT -GGTTC
CTGAGTATGTGGTCAATTTTGGAGAAAGTT3789213 CCAT GA GGTTC
GGATTACTCTACTTGTAAGAAAATACTATA3794405 CCA-GT GGTTC
TCTGTTGAAAACAGAAACTGAAATGTATCT3795374 CCCA GGGGA TC
GTTTTCTACAGCCTTAAAGTTTTATTTCCC3796985 CCTCA T GGTTC
CCGTGTGTATTCTTTGGTAGGTGATCCAGT3797448 CCCCGGGGA G C
ATGAACAAACCAATACCCCCCCCCCTCCCG3803790 CCCCGGA GC TC
TGGACACCCACAAGGTAACCACAAGACCCG3805217 CCACGGGA -TC
GGGGCACAAGACCCTTCCAGTCCCCACCAG3805356 CA CCGGGGTA C
AGGTGGAACAACATTATGAACTAACCAGTA3821107 CCCCGGA GC TC
GTAATCTAAGTGTTGCCCAGGGCATTTACA3823049 CCAA GGGGTTT
CCACCTGGGAAGATACACCAAGGCACCATT3823456 CCA-GGGGTG C
GAGCTGGTTTGGGGGTCCTCTGGCCTGAGA3823526 CT GT GGGGTTC
TCCTTCCCGAAAGTGGTTTCTAACCCCCCA3825297 CCTCGGGC -TC
GTTTCACATTCTAAAGACCAACTGTCCACT3828168 CCTC-GGG-TC
TAGGTTTTTTTTTTTTTTATTTTTTACTTT3828298 CCT--GGGTTC
CTCCCCTACCCACCCACTCCCCCTTTTTGG3836389 CCCT GGC GTTC
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/2/CCNCGGGGTTCen |
db : mm39 |
k : 2 |
strand : CCNCGGGGTTC |
format : html |
download :
0.006 | 0.006 | search_start;
3.069 | 3.062 | search_plus_done; http://172.18.8.138:28851/match?q=CCNCGGGGTTC&k=2&no_gap=0&offset=0&limit=200
6.110 | 3.042 | search_minus_done; http://172.18.8.138:28851/match?q=GAACCCCGNGG&k=2&no_gap=0&offset=0&limit=0
6.110 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.