CRISPRdirect — Rational design of CRISPR/Cas target. 

0 mismatch/gap   |   ≤1 mismatch/gap   |   ≤2 mismatches/gaps   |   more:

Search for: both strand plus strand minus strand

2025-06-13 18:56:52, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:3365618-3365628
TCAGTTTGTTTGTCAGGACCCAATACTTTG3365618CACATTGTAGGCATTAACACTTGCCGAATGTACAGAAGGTA
chr1:3999395-3999405
TGAAGGAAGTATTTCTAAGCTCCTTCAAAA3999395CACATTGTAGGGTCTTCATGTCACATGTATTTCCTATCCTC
chr1:4272661-4272671
GCAGAGGTCCTGAGTTCAATTCCCAGCAAC4272661CACATTGTGGGTCACAACAATCTATAATGAGATCTGACACC
chr1:5392467-5392477
AGTGTGGCTATCCTGGGGGAGATTGAGCAT5392467CACATTGTTGGTCCCCAAGCCTTGCCAGGCCTCTCCTGTAC
chr1:5878124-5878134
GGCAAAAGAGCTTCTTGCACATAAAGTTGG5878124CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:10803640-10803650
GGCAAAAGAGCTTCTTGCACATAAAGTTGG10803640CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:13527736-13527746
CTCTCCTGAGTCAGAATGTGGGGGAGCCCT13527736CACATTGTGGGTCATTCATTTGGTGTGTTGGCTGTGAACAT
chr1:14231508-14231518
GTGTTCTGTGTTCATAGAATCTACATCTCT14231508CACATTGTGGGCTCATTCACGGTTACTGCCAGATACCCATA
chr1:15047530-15047540
CTCTCCTGAGTCAGAACATGGGGGAGTCCT15047530CACATTGTGGGTCTTTTAATAATAGACTGAACCTCTGAACC
chr1:16630077-16630087
AAAAAAGAAAAAAATCCAGAACTGCTAAAT16630077CACATTGTAGGAATAAGCTTTACTTTTATAAGAAACTGCCA
chr1:17139018-17139028
ACTTACAGGTAAAGTGTTTTCTTACCCATC17139018CACATTGTGGGATGATTAAGCCAAATCAATACATCTAAGAA
chr1:17561073-17561083
CTCTCCTGAGTCAGAACGTGGGGGAGTCCT17561073CACATTGTGGGTCTTGCAGTGTTTGAACAACTGCAGAAAAT
chr1:18147638-18147648
AGGTGGGTGGAGGGTTTCCTAAGACAGTTT18147638CACATTGTAGGTGTAAAGACTACTTGCCTGCAGGCAAAACT
chr1:18270151-18270161
CTGTCAGAGAGACAGGATGAATGTTATAAG18270151CACATTGTAGGGCGAGATTAAGCACTCAACGCCTCAAGCAA
chr1:18328800-18328810
AGGGCAGCCTGCATTAAATATAGAGATAGG18328800CACATTGTTGGCTGAAGAACTTCTAACCATCTTCAACTGCT
chr1:24633450-24633460
CCGAGGTGGAATGTCACAGACAGCTGTCTT24633450CACATTGTTGGGGATCCACTCAACAAAGTAGCTGCTGTTCT
chr1:25545991-25546001
CATTCCCTTTATTATATGAGAAAATAAACG25545991CACATTGTGGGGATCACTGAGTCATTCTATCCAGTATACCC
chr1:26077344-26077354
TCAGATTTAGGATTAGTAAAGATCCTTTCC26077344CACATTGTTGGTAGCCTTTTTGTCATTTGAGAAGTGTCTTT
chr1:26391810-26391820
GGCAAAAGAGCTTCTTGCATATAAAGTTGG26391810CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:26511729-26511739
GGCAAAAGAGCTTCTTGCACATAAAGTTGG26511729CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:27480286-27480296
CAATTGGTGATCAGTTTGAGAGGGGTCCAT27480286CACATTGTGGGCATTATAAATCCTGGACTGGTACCCTGAGT
chr1:28550322-28550332
CCCTGGGAATAAAGCACCAACCAAAGAAAA28550322CACATTGTAGGACTCATGTTTCTGGCTACATATCTAGCAGA
chr1:30257423-30257433
GAAGTTTACTAAGCAGGACCTCAAGATGCA30257423CACATTGTCGGGAAGAAAATAGCAAAATTATGGGAGGGAGA
chr1:30453329-30453339
CTCTCCTGAGTCAGAACATGGAAGAGTCCT30453329CACATTGTGGGTCTTTCACTACAAAGTCTTGTAACTTAATT
chr1:31439639-31439649
CCCAGGATCTAAATCACCATCCAAAGAGCA31439639CACATTGTGGGACTCATAGCTCTGGCTGCCTATGTAGCAGA
chr1:32962101-32962111
TCATGTTCCTCCTGATACTTTTAAGTATCA32962101CACATTGTAGGAAGCCAGGAAACTGAAGGGTAAAGAAATAC
chr1:34610284-34610294
TCAGGCCAGTGGCTAAGCTAGCTTGTGCCT34610284CACATTGTTGGGTGACTCTAGCAACTGATGAGGTACTTGCT
chr1:35327024-35327034
CTCTCCTGAGTCAGAACGTGGGGGAGTCCT35327024CACATTGTGGGTCTTTCAGAAGCACATGGCCTGGAGAAACT
chr1:36898218-36898228
CCTTACATACAGATGAGGTCTGTCTGTCGG36898218CACATTGTGGGGTACTTCTGAGCCTATATTCAGAAGGATGC
chr1:37170803-37170813
TGGCAGGTTGGGGAGAAACAGGGTCACTAA37170803CACATTGTTGGCTGGAGGATAAAATACAAGCCACATTGGAA
chr1:37662204-37662214
CCAGAGAAAACCTGCATCAAAATTAGCACA37662204CACATTGTTGGCTTTCTGAGACATACAGTAAAAGCATTTGT
chr1:40656523-40656533
CACACACCCATACAGGTGGAATGGATTGCT40656523CACATTGTGGGAGCAGGTGTACCTAAGCAGAATAAATTTTT
chr1:41897892-41897902
AGTATTTCCTTGCCATTTGCTGTGAAGATA41897892CACATTGTTGGTAAGGTCAGAGTTGATGTGAAAATGAAAAT
chr1:42918661-42918671
TCTTTACCTGCAAAGGTAGACTTGTGGTAT42918661CACATTGTAGGAGTGACACCTTCTACAGCGTTGACACTTGA
chr1:43153397-43153407
TACTTCATAGATTTTTCCATATATAATCTT43153397CACATTGTTGGTTTGCCTCGTTAGTATGCCTTAGTGTCATC
chr1:43329390-43329400
CACACACACACACTCACACACTCACACCCA43329390CACATTGTAGGTTTTGGGCGCTGATGTTGATGCCTGTTAAT
chr1:44428660-44428670
CTCTCCTGAGTCAGAACGTGGGGGAGTCCT44428660CACATTGTGGGTTTTTCATTTTGGTGGCTGGTAAACCCCTC
chr1:44433674-44433684
CTCTCCTGAATCAGAACGTGGGGGAGACCT44433674CACATTGTGGGTCTTTCATCACCAGTTAGTTTGCTTCTCTC
chr1:45138504-45138514
CTCTCCTGAGTCAGAATGTGGAGGAGTCCT45138504CACATTGTGGGTCTTTCAACACATGTATTAAATAATACATT
chr1:45390633-45390643
ACCACACACAGTACTTGGTTGAGTCCTTCT45390633CACATTGTAGGCCTCTGATGTTGTCCCCTTCTGCTCTTCTC
chr1:45804107-45804117
TCATTACATTGCCCAAATAGGTTTTGAACT45804107CACATTGTTGGCAGCCTCAGTATCCCAAGAAGCTCCTATCG
chr1:47972873-47972883
ATATATATTTAAAAAGATGCAGGTGAGGTT47972873CACATTGTGGGGGCTGTGAATGTAACATTTTCATCCCACTA
chr1:48134694-48134704
TACATGCTACAATTATCAAGCGTGGAAGAA48134694CACATTGTGGGTGGTGCTATCCATGGGCTGTAGTTCTGTGT
chr1:48398913-48398923
GGCAAAAGAGCTTCTTGCACATAAAGTTGG48398913CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:50642921-50642931
TAGGAGTTTATTTCCTTGTACCTTGTGAAA50642921CACATTGTAGGATCAAAAATCAAAACTGTTGAACAGAAATT
chr1:51676963-51676973
CTGAACCAGAGCCACTCTCTCAGTGAGTGA51676963CACATTGTAGGTCTTCACCTAGATGGGCCAGTGAGTGAGTG
chr1:51677149-51677159
CTGAACCAGAGCCACTCTCTCAGTGAGTGA51677149CACATTGTAGGTCTTCACCTAGATGGGCCAGTGACACATGG
chr1:52038246-52038256
TAGTTTCTTAGATCCAGTCAATTGTTTTTA52038246CACATTGTGGGGCCACCTATCTACTTCTGTGGAAATAGCCA
chr1:52139865-52139875
CTCCACCGCACAGCTAGGAGGCAGCAGAGT52139865CACATTGTGGGCCAGACGGGTGCTTCTCTGAGGCCCCTCTG
chr1:53255980-53255990
TGCATAGTGAGTAGATCCATTTCCCTACTG53255980CACATTGTAGGTAGATCAAGAGACACAATCAAGAGACCAGA
chr1:53456037-53456047
CTGATTGTGCTGGGGCCTGGACCCGAAAAT53456037CACATTGTAGGGGGCCTGGACCCAAAAATCACATTGTAGGG
chr1:53456066-53456076
TCACATTGTAGGGGGCCTGGACCCAAAAAT53456066CACATTGTAGGGACCACTGACAGTGCTGGGACTTTGCCTGC
chr1:53572147-53572157
CTCTCCTGAGTCAGAACATGGGGGAGTCCT53572147CACATTGTGGGTCTTTCAGACCAATACAAATGGTTCCTCCT
chr1:57411922-57411932
CACTTGATTATGATCCAGAACTCTTCTTTA57411922CACATTGTTGGATTTTTTTCCTGATGATAGTATTTTGTTGA
chr1:58854387-58854397
GGCAAAAGAGCTTCTTGCACATAAAGTTGG58854387CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:58893815-58893825
ATTAAAATGTAAAACTCTCAACTCCTTCAG58893815CACATTGTGGGCCTGGATGCTGCCATGTTCCCACAATGATG
chr1:60018491-60018501
GAGTCTGAACCCAGCATCGTTAGGAACACA60018491CACATTGTTGGAGCCCCGTCACCAAGTCTGTTATTTACTTC
chr1:60066909-60066919
TTTCTTAAATTATTGACAGGGAAGGCCCAG60066909CACATTGTGGGTAGAGTAATTCCTGGGTTGGTAGTCCCAAA
chr1:62239481-62239491
AGGTTCTGGTGCAGGCTGGGTGTTTTCTGT62239481CACATTGTAGGTCTACAGGTAGAATATGTTCTGCATATATG
chr1:62576837-62576847
GGCAAAAGAGCTTCTTGCACATAAAGTTGG62576837CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:63260529-63260539
TTAAAGTGTACCATTTGGTAGTTCAGTAGT63260529CACATTGTTGGAAACTGTTTTACCTTGCAGACCTGAAACTC
chr1:64220899-64220909
GGCAAAAGAGCTTCTTGCACATAAAGTTGG64220899CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:65003035-65003045
GGCAAAAGAGCTTCTTGTACATAAAGTTGG65003035CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:66026740-66026750
CTTTTTCTTTTTCTAATGAAAACAATAAAT66026740CACATTGTTGGAAGACAGTTTGAAGCTAGTCAGGATGAATT
chr1:68242167-68242177
TAAACTTTTCCTTAAATTTCATCAGGATTT68242167CACATTGTAGGTATTTATCTTATTAGCAAGACAGATCCATA
chr1:69109759-69109769
GAAGAAGGGAAAACAAACCTATGGTAGGTG69109759CACATTGTAGGAATTCACTCACACACAGTTGAGTTCTCTTT
chr1:69740790-69740800
GGCAAAAGAGCTTTTTGCACATAAAGCTGG69740790CACATTGTAGGACTATTGGACATCCCCTGTGGTAAGACCTT
chr1:70638091-70638101
AGCCTGAGGAAAAGATGGTCCAGTGATAGG70638091CACATTGTGGGATTCAGCTCGAGGAGAGGCCCCCAAAGCCT
chr1:70866708-70866718
GAGGCCTTGGGTCCTATGAGGGTTTGATGT70866708CACATTGTAGGGGAATGCCAGGGCCAGGAAGCAGGAGTGGG
chr1:72168259-72168269
GGCAAAAGAGCTTTTTGCACATAAAGTTGG72168259CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:72604712-72604722
AAATCAGCTTGATTAGGTTGTTTTAAAAGT72604712CACATTGTGGGGCTAGAGAGATGGCTCAGCAGTTAAGAGCA
chr1:73598366-73598376
ATACACAAGGATAACTCCCAGTGTCCTCTG73598366CACATTGTTGGGGAAAGAGACCCTTCCATGATCACAGTGCC
chr1:74114032-74114042
GTGGCTTCCTGCCTTGGGAACACAGGAAAC74114032CACATTGTTGGGATCTAAATGGCCTTTTCCTCTAGAACTTG
chr1:74696155-74696165
GGCAAAAGAGCTTCTTGCACATAAAGTTGG74696155CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:74746399-74746409
TTCTGGCCTCAGGACTGTACAGATGTAGTG74746399CACATTGTAGGTATGGGCACATACATACAAGTAGCTATACA
chr1:76094949-76094959
TGATCCAGGTAGTGCTGGGTATTATAGGGA76094949CACATTGTGGGGTGCTATAAGGAAGTAGTAGAATCCCATAA
chr1:77017183-77017193
TGTAATAATCAGTTGAGGGGAGGGGAGACC77017183CACATTGTGGGTGCAGCCCTATTGTAAGAACAATGGATCTG
chr1:81545448-81545458
GGCAAAAGAGCTTCTTGCACATAAAGTTGG81545448CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:81978535-81978545
ATGTCAACTTTCATAGCCACTCACTCCCAA81978535CACATTGTGGGATTGCTTGTCTTTGGTGGGTCCAAAATAAA
chr1:82554757-82554767
AGTCTAATGGCCTGAGTGCAATCTGAGAAC82554757CACATTGTTGGAAGGAGACAACTGAATCCCCAAAACTGTTC
chr1:83224519-83224529
AGCATTCCATGTTTTGGCTCCAGCAACTTC83224519CACATTGTAGGTCCTCTCATTCTCCCACGCTATCTTTCTTC
chr1:83921383-83921393
AAAACCTTTGAATTAGGCTGTGCAATAGGA83921383CACATTGTGGGCACAGCACTGGAAGACTCCATGGCAAAGGA
chr1:86026015-86026025
AAAATGAAAATTTTGCTCCAGAAGGTCAAC86026015CACATTGTTGGGTAAATACAGGCGGAGGTAGCCTGGGTTTG
chr1:86671693-86671703
GGTGGTGGCCAGGGTCCAGCAGTAGTGTCA86671693CACATTGTTGGACTTTCTTTATTTTCTTTTGTTTGCTTATT
chr1:86817181-86817191
TACAGGTGTACATCCTTTGTCTTTTAGTCT86817181CACATTGTTGGTAGTATTCTAGGAGCATGGGAGTTTCAGAG
chr1:87064930-87064940
GGCAAAAGAGCTTCTTGCACATAAAGTTGG87064930CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:87261825-87261835
TCTCTTTCTTAGTCTCGTAAGTACTACAGG87261825CACATTGTGGGCAGAGGATCTGATCCACAAACATACCGGAT
chr1:88535190-88535200
GACTGCTGTGAGTTCAAGACCAGCTTGGGA88535190CACATTGTAGGGCCCAACTTTGAGACAGAACATTCCTTTAC
chr1:88559485-88559495
AGAGCTAAGTAGGCGTTTCTACTTTGGGAC88559485CACATTGTGGGAAGCCACATGTGCCGTTGCAGAGTGGCACT
chr1:89345365-89345375
CAGTCCAGTCCCAGAGTACTGCTCTGCTTT89345365CACATTGTAGGGTGCTAAAATTCCAGGCACACAGGACCAGA
chr1:90076294-90076304
ACCAGCAGGCTCTGCAGCATCAAACCTAGA90076294CACATTGTAGGATTTGTTTGGGGGACAAACTAGGGTTTGGA
chr1:90564697-90564707
CATTTGAAGCTGCTCACATATGTACATGCC90564697CACATTGTGGGTTAGGATGCACATATGAGGGGAACAGGAGA
chr1:93054710-93054720
TACTGATTCTATGAGCCCAGGTTCAAAAGA93054710CACATTGTAGGCAGTTAGAAAAATATGTCTGCCCACAGGCA
chr1:94826385-94826395
TTGTAAACATGTGCCTTGCTTATTGAAAAT94826385CACATTGTGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCTC
chr1:95567610-95567620
TATTGAGAATGGCCAATAAAGCACTACTAC95567610CACATTGTTGGGACCCTAGCATTTCAGTGTGTAAGCCTGCA
chr1:99142281-99142291
TTGGAACTTAAGTTATAGATTTTTGTGAAC99142281CACATTGTAGGTACTAAGAATTGAACCCTGGTCCACAGCAA
chr1:100259794-100259804
AATCTCATGACATGTAAAATAAAGGTAGTC100259794CACATTGTGGGGGACTTTTAATTGTCAGGGATAAACAGGGA
chr1:100316928-100316938
CCTTGGAACTAAACCACCAATCAAAGAAAA100316928CACATTGTGGGACATGTGGCTCTAGCTGTATATGTAGATTA
chr1:101432568-101432578
ACTAGAGCTGAACACCACAAGTTCCTTGTT101432568CACATTGTAGGGCCTTTCATCTATGGTCCCTTCATTTGAGA
chr1:102820114-102820124
GTGGGGAACAAAGGAGGAAAGTAATCTCCT102820114CACATTGTTGGAGAAAATTTTGTCCTGCAGGAGCGTGGTTG
chr1:103136467-103136477
GGCAAAAGAGCTTCTTGCACATAAAGTTGG103136467CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:103530934-103530944
TGTGGGTAGAATTAAGTATCCAGTAAGGTT103530934CACATTGTAGGTGATTTTTATTTTTTGGATAAACAAAGACA
chr1:104220860-104220870
GGCAAAAGAGCTTCTTGCATATAAAGCTGG104220860CACATTGTAGGACTATTGGACATCCCCTGTGGTAAGACCTT
chr1:104889605-104889615
GGTCATTTAGATTACTAGCCAAATCCAGTT104889605CACATTGTGGGAGCTTGATAAGGCCTGGCCTAACAGATAAC
chr1:108474997-108475007
CTCTCCTGAGTCAGAGCGTGGGGGTATCCT108474997CACATTGTGGGTCTTTCATTTTTAAGGGCTTATCAGAATGA
chr1:109059911-109059921
GGTAAAAGAGCTTTTTGCACATAAAGCTGG109059911CACATTGTAGGACTATTGGACATCCCCTGTGGTAAGACCTT
chr1:111184924-111184934
GGCAAAAGAGCTTCTTGCACATAAAGTTGG111184924CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:111379583-111379593
CATCACTTCAATAGAATTCCAGAGTTGGGG111379583CACATTGTAGGATGGTTAGAACCAGCATTATCCATCTACCA
chr1:112195633-112195643
GGCAAAAGAGCTTCTTGCACATAAAGTTGG112195633CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:112380900-112380910
CTCTCTTGAGTCAGAATGTGGGGGAGTCCT112380900CACATTGTGGGTCTTTCATATACATAATAAATCTTAAAAAA
chr1:112894242-112894252
GGGCAGAAAGACCATCAGCTTAATGAGGTC112894242CACATTGTGGGTGATTACCCCCGCTGAGCCATGACTGTATT
chr1:113083263-113083273
CAGAAATTAGATTCAGATAGAAACTCCACT113083263CACATTGTTGGGCACCAAGCTGCTCTTCTGCTACATATGTT
chr1:113702624-113702634
TGTGTGTGTGTGTGTGTTTGTTTGCACATA113702624CACATTGTAGGAATGCATGAAGGCATTTCTCTATTTGTCTG
chr1:114919522-114919532
ACAACTGGAGGTCTGGGATGGTGATTCTCC114919522CACATTGTTGGTGGGATTGCAAGCTGGTACAACCACTCTGG
chr1:115816662-115816672
GGCAAAAGAGCTTCTTGCATATAAAGCTGG115816662CACATTGTAGGACTATTGGACATCCCCTGTGGTAAGACCTT
chr1:117633229-117633239
GGCAAAAGAGCTTCTTGCACATAAAGTTGG117633229CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:119254641-119254651
TGTGCCATTGTCCCCACAGGGACACATGGT119254641CACATTGTGGGGATACATGGTCACATTGTGGGGATACATGG
chr1:119254662-119254672
ACACATGGTCACATTGTGGGGATACATGGT119254662CACATTGTGGGGATACATGGTCACATTGTGGGGATACATGG
chr1:119254683-119254693
ATACATGGTCACATTGTGGGGATACATGGT119254683CACATTGTGGGGATACATGGTCACATTGTGGGGATACATGG
chr1:119254704-119254714
ATACATGGTCACATTGTGGGGATACATGGT119254704CACATTGTGGGGATACATGGTCACATTGTGGGGATACATGG
chr1:119254725-119254735
ATACATGGTCACATTGTGGGGATACATGGT119254725CACATTGTGGGGATACATGGTCACATCACAGGGATACATGG
chr1:120502145-120502155
GGCAAAAGAGCTTTTTGCACATAAAGCTGG120502145CACATTGTAGGACTATTGGACATCCCCTGTGGTAAGACCTT
chr1:121045148-121045158
GAAGAAGACATTCCTTAGGGCAGCAATCCA121045148CACATTGTTGGAACTAAAACAGTGGACACTGTGGAGACACA
chr1:121073064-121073074
ACTGGAACCTCTGACTTCCACATGCACACT121073064CACATTGTAGGTGCATATGCATCAGCCTTTGTGCTTCCTTA
chr1:123260651-123260661
CATTCTCAGTTACTAATTGCTCCAAACTGA123260651CACATTGTAGGATTTGGTACCCCGTGTCCTGTCCATTTAAA
chr1:124046413-124046423
CTTGATAACTAACTGAGGTGAGAAGAGCTG124046413CACATTGTAGGTGGCTCTATTCCACCGGTTTGGATCCTTGA
chr1:124350682-124350692
AAGGCAGATCATTTCGTTCACTTTGATAAG124350682CACATTGTTGGTATAAAGAAAATCTGGTTACTTAGTCAATC
chr1:125657858-125657868
GAGTGTGGGTGTGCAAGGAGGCTTTCGGAA125657858CACATTGTAGGGCAATTCCCTTTGCCCTTTATTGCCTCTGC
chr1:126027674-126027684
AGGATTAATGACTGGTGCAGGAGGGCCATC126027674CACATTGTGGGCTGGTGGTCCTGGGTACTATAAGATAGCTG
chr1:126295318-126295328
GGAAGGCTTCAATATAGTGGCTCACTACCA126295318CACATTGTAGGATTCTTATTTATGTAAGTTGTGGATGACAA
chr1:126979465-126979475
AGAGGAGCCCCTACCAGATCAGAGGTCATA126979465CACATTGTAGGAATTCCAGCTCTCAACTTGATCACTGACCA
chr1:127067460-127067470
AGCTCAGGTGCCCAGCCACCCTGGCGGAAC127067460CACATTGTTGGGTGTGGCCCTTCAATGTTCTTCCCTTACTT
chr1:127250656-127250666
TGCTTTTCCTGAGTATCAGATCCTAGGGCA127250656CACATTGTGGGTGAACTCTGGAATGCCATGGTGTAAATGCT
chr1:127420105-127420115
CATATTCATTTGGCACATTAGAAATCCATT127420105CACATTGTAGGGTATATCAACACTTCATTTATTTGGATAGC
chr1:127489566-127489576
GGCAAAAGAGCTTCTTGCACATAAAGTTGG127489566CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:127823310-127823320
GGCAAAAGAGCTTTTTGCACATAAAGCTGG127823310CACATTGTAGGACTATTGGACATCCCCTGTGGTAAGACCTT
chr1:128065607-128065617
AGGGATTATAAGATGTCTCAGTGGGTAACT128065607CACATTGTAGGAGAAGATGAGCTCTACAGAGTTGTCCACAC
chr1:128917756-128917766
CAACTGAAGCATACAACTCTCAGTGCCTAG128917756CACATTGTTGGCATGAAGTAGGACTCCATGAATACATGCTA
chr1:130822911-130822921
TAGCAATAGCCTATACAGTTCATTCAGGGT130822911CACATTGTGGGTACAGCAGCTCCACACCACGTGACAGAAGA
chr1:134157431-134157441
TCAAGCACACAAAGGCATTTTGGAAGCCAT134157431CACATTGTAGGGAAAGGGGGTGCTTTCACCCTTACAATGAA
chr1:134607583-134607593
GAAGGGGACATAAACCCTCTCTGTGCAAGT134607583CACATTGTAGGACCAATATGTGAGCTGGTAATGGCAGAGAC
chr1:135718330-135718340
CCCCAGCTCTTGTGTCTTTGTCTGTGTGAG135718330CACATTGTTGGATGTTATCTCCTATGCCAAGGTCGAGCAGG
chr1:135764999-135765009
CCCTTAGGGATGGCTCTTGTTCAGAGCCTT135764999CACATTGTAGGTGGCTTTTCTGACTTCTGGGATAGTGAGGG
chr1:136000488-136000498
CATGCATGAGGACCTGAGGTGCAGCAGGGG136000488CACATTGTGGGTCTATAACCTCAGTAGTGAGATGGAGACAA
chr1:136658202-136658212
GCAGCAGCAAGGTTTTAGGTAGTGAATGAA136658202CACATTGTTGGAAACAAGTTTTACAGAATTTTAACAGTGTG
chr1:136982134-136982144
TGTCAGCAGCTGGATGCTGTGGACTTGATG136982134CACATTGTAGGTCCCTAGTGCTGACCCACCGGGTCTATGTG
chr1:137279157-137279167
ATTACCAAAGAAACACGTTTTAAGTTTTCT137279157CACATTGTGGGTCTGCTTAAGACACAATCATTCATATTTTT
chr1:139091380-139091390
ATAGTTAGTGATTGACGGGGGAGGGCCTAT139091380CACATTGTGGGTGGTGTCATCTCTGGGCGGGTAGCCCTGGG
chr1:139618016-139618026
CTAAAAGATCACTTTACCAGCTACACAACT139618016CACATTGTGGGAAGGCAAATTCAAGAACTCCTTACAAGTAT
chr1:139864246-139864256
CTAACAGAACTTGAAAGCTTCAACATAAAA139864246CACATTGTAGGTGAATTAAAACCCCAGCACTCTGCAGGAAA
chr1:140082453-140082463
CTAACAGAACTTGAAAGCTTCAACATAAAA140082453CACATTGTAGGTGAATTAAAACCCCAGCACTCTGCAGGAAA
chr1:144192797-144192807
TGTCCTCTAGAGAGGGGACACTCATGTTCT144192797CACATTGTAGGTGATAAAAAGATGATGGATGGATGAACAGG
chr1:144574261-144574271
CTGAGGGATACCAGGCACTGCAGCATTTTC144574261CACATTGTGGGATGAGGAAATGCACAAATATCACAATTCCC
chr1:144733995-144734005
GGCAAAAGAGCTTCTTGTACATAAAGTTGG144733995CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:146100205-146100215
TGTGGATATGGTCTCTAGAGGTTCTCCCTC146100205CACATTGTTGGGCATTTCAACTAATCTCTTCCCTGATGGCT
chr1:146276508-146276518
GGCAAAAGAGCTTCTTGCACATAAAGTTGG146276508CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:146488809-146488819
AAAGTGTCATAACTTCTAAGTTTGTCTCAG146488809CACATTGTTGGAAAAACTAAGTAAGATATGCTTCAGAAAGA
chr1:147051882-147051892
CTGGAAGCTTTGGGGGGTTTGGTTGGTACT147051882CACATTGTGGGATGACACAAAATTTGCCGAAGTGTAGAACT
chr1:149027540-149027550
CCCTTAATAGTTATTACATTGCTAGGTTTA149027540CACATTGTTGGTATTTTCTGTGTTCTTGTTATTATCTTTCA
chr1:150287917-150287927
CTGTCTTCCCAGAGATTTTTGATTGATTTT150287917CACATTGTTGGTGACATTTGTAATAAGTACACAAACAATTG
chr1:150920474-150920484
CCCCTCCACACCCCTAGCTGGTGTTTATGC150920474CACATTGTAGGACTGGACCACAAAAGGTAAATGCTCCCCCA
chr1:150976871-150976881
TTAATTAATGATTGATGGGGGAGGACCCAG150976871CACATTGTGGGTGGTGCCATCCCTGGGCTGGCAGTCCTGGG
chr1:151590451-151590461
CATAGGCTTGAGGCAAAGGGAACACAGGGA151590451CACATTGTTGGCTGCATTGTTACCTAAGCATCTTTAACCTG
chr1:151668652-151668662
ATAGGGGGTTTGAGGATGGAAATAGTTGGA151668652CACATTGTAGGCTGTTTGTAATTGAAGCAAGCTAAAGTTAA
chr1:152110878-152110888
ACATTATCAAAGGGACGGTGTATGAGAAAG152110878CACATTGTAGGCCTACGTGTTACACGGTGGCAATTGTCTTC
chr1:152379044-152379054
CCACGTGGTACAATGGCAGGTGATGGTTTT152379044CACATTGTGGGAACATTTTTTTCCTGAGTTCCCCTTCCTCG
chr1:158422101-158422111
ATAGTCAAATGCAAATCTCCATGGCTGTTT158422101CACATTGTTGGTACATTGCCTTGCTTTCTTCCAAGGAATCC
chr1:160647012-160647022
GGCAAAAGAGCTTTTTGCACATAAAGCTGG160647012CACATTGTAGGACTATTGGACATCCCCTGTGGTAAGACCTT
chr1:160866139-160866149
ACTGTGAAGTGTGCATTTTGTTCTGATGAG160866139CACATTGTGGGGAGTTCACATTAGACATTTTTAAATCTATT
chr1:164102304-164102314
AATGAGACATGACAATGTTTATCCCCAGAT164102304CACATTGTTGGCTTCCAAGTTATGCATGTAATTGCTAACAG
chr1:164421706-164421716
GAGAAAAGCAGTTTGTAATAGCAAGAAATC164421706CACATTGTGGGGTTCCCTGCCTTCTACAGACTCTCACCTCC
chr1:165600788-165600798
CACTTCAGAGTCTATGAAGACTGGGGTCTG165600788CACATTGTCGGGAACCACCAATGGGGTCTTTGTGGTATCCT
chr1:167891744-167891754
ACACTGTGAGAAAGCACAGACTTCCTTACC167891744CACATTGTTGGCAGAAGCCCCTGCCTCAGCGGGTGCGCACA
chr1:170991317-170991327
AGAGTGCAATATTCTCTTTGGTTTATTCCA170991317CACATTGTGGGTTTATTCCCATATTAATGCTAAAATTTCCA
chr1:171142334-171142344
CTCTCCTGAGTCAGAACGTGGGGGAGCCCT171142334CACATTGTGGGTCTTTCAGGGGAAGAGGTTTTGTCTTTGTT
chr1:172298478-172298488
CTTCTAGGGCAGCTCCAATCAAGAACTGCG172298478CACATTGTGGGCACTGGCACCTGACGGTCTTGCCCAAGACC
chr1:173872724-173872734
ATTAGAGATTGCTTGGCTTTACACATATCT173872724CACATTGTGGGGTGTTATGCAGCATACTTAAGGCATTCGAA
chr1:174320576-174320586
CTCTCCTGAGTTAGAACGTGGGGGAGTCTT174320576CACATTGTAGGTCTTTTAGTACATGCCTTTAATCCCAGAAT
chr1:176374197-176374207
GGCAAAAGAGCTTCTTGCACATAAAGTTGG176374197CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:177065655-177065665
ACTGACAACCTAAGTTCACTCACCAGGACC177065655CACATTGTAGGAGAAAAACCTACTCTCAAACTTGAAATGTG
chr1:178101755-178101765
TTCTCCTGAGTCAGAACGTGGGGGAGTCCT178101755CACATTGTGGGTCTTTCAGTATCATTCTTTGTTGAATCATG
chr1:178874404-178874414
GCAGCAAAGGACTTCATACCAACCTCCCTC178874404CACATTGTTGGAAACCATCTCCTGGCAAACAAGGTGAGACT
chr1:179096401-179096411
CTCTTCTGGGTCAGAACATGGGGGAGTCCT179096401CACATTGTGGGTCTTTCACTCTAACAGCGTGGTATTAGATC
chr1:179479631-179479641
CTCTCCTGAGTCAGAACGTGGGGGAGCCCT179479631CACATTGTGGGTCTTTCAGCTGTCCCTGACCTACAAGTTAC
chr1:180062750-180062760
AGCCAGGAAGAGTGTGGGATAGTCCATGGC180062750CACATTGTAGGTCTTGAGCACTTCCCTGTAGGCCCAAGGTA
chr1:181682265-181682275
AGGAATAATGTGGGGAAGTCAGAACAGCTC181682265CACATTGTTGGGTGACTTGAAGCTGGAGCCTGCCCAGCTTG
chr1:181683082-181683092
ATGTGGGGAAATGGGAAGTCAGAACAGCTC181683082CACATTGTTGGGTGAACAGCTATGCAGCTCGCCACTGGAAC
chr1:181701696-181701706
TTTGTTACAGTAATAAGAAACTGATGAACA181701696CACATTGTTGGTTAACCATCATTAGCCTGTTCAATGTCTAT
chr1:181985187-181985197
TTTAGTGACCAGTATGAGAATGTGTGAGGT181985187CACATTGTGGGCGGCCACAATGGAGTTTGAAAAAACATTAA
chr1:182642199-182642209
TTCTGGTGGCTCCCCATGCTGACTGCTGGG182642199CACATTGTAGGTGTGCTCCGGATGGGTGCACAGGGAGCTAC
chr1:183452673-183452683
TGCACTCAGCCTGCTCATCATCATGGCAGA183452673CACATTGTGGGGAGCTCAGCAGAGGGCAGATGGCATTCATC
chr1:183689227-183689237
AGCTTAGAGTTTCTTTTGCTGGCTTCCTCT183689227CACATTGTGGGTAAACACACACATAAATACCCAGGGTAATG
chr1:184612742-184612752
GGCTATTGAACGTCCGTGGTGTGTCTCACC184612742CACATTGTTGGTTCATCTGCTCATAGATACTTGGAACATTT
chr1:187757435-187757445
AGATCAGAAGACCGCCTAGGTTTCTTCTGT187757435CACATTGTAGGTCTAAAATATGATTGGAGTGGACATGGGAC
chr1:188574549-188574559
ATTTCGGAAAGGAGAATTTCCAAATAAAAT188574549CACATTGTGGGAAGACAGTGATCTGTCCATAAAAAGATGCT
chr1:189017034-189017044
AAATCTTCATTAAGGGATCTGTACACCTCA189017034CACATTGTTGGTATAAAACTATATATTACTTCTGAGAGCTT
chr1:189087255-189087265
ACCACAGAAGCTCTTGACTACACCCCATGG189087255CACATTGTAGGCATTTGATAAAAATGACAGTCATTCTCTCT
chr1:189881182-189881192
TACGAGTGCGACATAAAGGGAGATTTAAAG189881182CACATTGTTGGACGCTGGAAATACCAGAGAGAGAGAGAGAA
chr1:190143756-190143766
GGGGTATAAAGCAGAATAATTGACAGTGTT190143756CACATTGTAGGCCAACCTCAGAGTTCCTTTGTGAGGCTGGC
chr1:190202915-190202925
CTTTCTGATGTCTCTGCTGACAGCTCAGTT190202915CACATTGTAGGTAGAGGGGGAATGGAGGTTCAATTAAGAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://crispr.dbcls.jp/detail/en/mm39/CACATTGTNGG
lang : en | db : mm39 | k : 0 | strand : | nogap : | query_string : CACATTGTNGG | format : html | download : | debug : 

0.006 | 0.006 | search_start;
0.508 | 0.502 | search_plus_done; http://172.18.8.138:28851/match?q=CACATTGTNGG&k=0&no_gap=0&offset=0&limit=200
0.880 | 0.372 | search_minus_done; http://172.18.8.138:28851/match?q=CCNACAATGTG&k=0&no_gap=0&offset=0&limit=0
0.880 | 0.000 | cgi_end;

CRISPRdirect | DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use CRISPRdirect in your work, please cite:
Naito Y, Hino K, Bono H, Ui-Tei K. (2015)
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.
Bioinformatics, 31, 1120-1123. [Full Text]