— Rational design of CRISPR/Cas target.
2025-06-21 21:46:14, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
TGGGTGTCGGGCGACTACGCTCGCAAGGTA20115176 CCCCGGGGTTC
TCCCCTACCCACCCATTCCCATTTTTTTGG21480749 CCCCGGGGTTC
GCACCAGCTACAGTATATGTCCTGGCCAGA34509325 CCACGGGGTTC
CCATGTTGATGGAAATCACCACTCACAGGT39906305 CCCCGGGGTTC
CTCCTCCACCCACCCACTCCCACTTCTTGG44933857 CCCCGGGGTTC
GCCCACAAATGCCAGAAGAAGGCATTAGAA46109065 CCCCGGGGTTC
CTTTAGTACAGGCTCTGGTGGCGGGCCACA54702912 CCTCGGGGTTC
GTCCCATGTAGGTGAATTATCACCACCGGG58270054 CCCCGGGGTTC
CACAAAGATCAACCGAGGAAACAAAATACC68829621 CCACGGGGTTC
CTCTAAAGACTGTTCACCTAAACGGTGGCC74198612 CCTCGGGGTTC
CACCGGGCGGGATCCCGGATGCTAACACTC74989886 CCGCGGGGTTC
TGTCTACCAGCTCTAGCTCCTTCCCTGCAG75090849 CCCCGGGGTTC
TTGAGATCAAAGTCTACCATGAATAGATAG77728888 CCTCGGGGTTC
AAGAGGATGCAGGATGCAGCAAAGCGCAAG91072571 CCACGGGGTTC
GCAGCACTCAAGTTCTCATCCCACTGTCTC92900916 CCACGGGGTTC
CACCTTCCATGTCATGAAGGTGAATTATGA116540878 CCACGGGGTTC
CTCCACCTCCTGAGTTATATATAGCTCCAG119122335 CCCCGGGGTTC
GACTTCCTTTGCTATTTGCAGTTTTCCTGG129897800 CCACGGGGTTC
TGGTAGAGCACTTGCCTAGAATGTCTAAGG136933572 CCCCGGGGTTC
ACCATCCCTTCTTCCACATGCCAATAGCAG140184557 CCTCGGGGTTC
TTGATAATGATTAATATAGAGAGACTAAAC147816533 CCACGGGGTTC
ATTGAACCAATTACTACTTCATTAAACAAG150724836 CCTCGGGGTTC
CCAAGGTAAGAGCCTGATGCTCAACTACTG151219819 CCGCGGGGTTC
ATGGTTACTCCCTGGAGTTCCTAGGACAGC151447062 CCCCGGGGTTC
GTGGAAATTACCACCCACTGGCCCCCGCCC156865481 CCCCGGGGTTC
ACCCAATCGCACAACATAAAAAGAAAGGGT162069445 CCCCGGGGTTC
AGTCACCCATTAGAAGGGGTTCTGGCAACA170438860 CCTCGGGGTTC
GCCATAGGGAAGGGACACCTATAGAGCAGC170736130 CCGCGGGGTTC
CTCCCCCTGGGAGCTTATGGAAATTCCTTC172256910 CCACGGGGTTC
GATGTCAACACAGAACTTCACCTTGGTCAG176766571 CCTCGGGGTTC
CTTAAGAAGCCATCTTACTCTCCTTAGATT181590086 CCTCGGGGTTC
ATCTCCAGAGCCTGAAGACCTGACTTGGGT188633258 CCTCGGGGTTC
TCAGCTTCAGCTCCTTCAATGACGCTTTTG188968262 CCCCGGGGTTC
CCCGATGAGCCTGGGCTGGACCCCTGCAAA191059565 CCACGGGGTTC
GTGTGCATGCATATACAGTTCAGAGGGTGA191765354 CCTCGGGGTTC
CTGAGGCTCTGAGCCTCAAGGACCAAGCAA193122378 CCACGGGGTTC
CATAATTTATGAGTCCCGATGCGCAGAGGG4368448 CCTCGGGGTTC
CCGCTGCGGAAGGCCACCCGCGAACCCACC9047435 CCACGGGGTTC
TAGCTGGAGACACTCAGTGGTTAGAATTCT11246218 CCTCGGGGTTC
CACATGAACTGTGGGAGGAATTATTACTCC20838064 CCTCGGGGTTC
CTGGCCGGGCTGGGGCTGAGGCCGAGCCAG26518615 CCGCGGGGTTC
GAGCCACACCACAACTAGAAACAGGCACAA27440761 CCTCGGGGTTC
ATTCATGGTTCATAAATTCCAAGCTGACAT37789630 CCACGGGGTTC
CAGAAGTAGGGTCTTTGGAGGGTGCTAAGG60261831 CCACGGGGTTC
CCAAATATCATATTTTTTGATGGGAGTGGC79043274 CCACGGGGTTC
AGCGGAGGCGCGTGGAGGAGGCCGCCGCCG92231573 CCGCGGGGTTC
TCATTATTCCTGTTTCGGAAAGAGCTGGTA101653330 CCTCGGGGTTC
GGTAGTTACTAGGAAGGATGTTTTGTGGAA102735266 CCCCGGGGTTC
CATGAGTCACTAACCAGCCTCAACCAAAGA102838695 CCTCGGGGTTC
AAATCACTATAGTTCAACACTGGCACTGGA117156645 CCTCGGGGTTC
TCTCAAAGGTCAGCTGGTGCCTGAGACCAG117597228 CCCCGGGGTTC
CGCAGTCCGCCGGGAGGCTCGGCTCTCCTT120808056 CCCCGGGGTTC
TATCCCACCTCTGACCTTGGGCAACAGGAA124917230 CCACGGGGTTC
ATCCTTCTCTTCCCCCTCCTCCCTCCCCCT126409439 CCCCGGGGTTC
TGGCACTCCCAAGGTACCAACAAGCCTGTT131717490 CCACGGGGTTC
CGACTCCGAGTCCTCCAGGACTTACCTGTT141252370 CCACGGGGTTC
TAAAGTACATCTTCAAGCAAGACTGTACCT141808903 CCTCGGGGTTC
CTGTAAAGTAGGGTTGCTAAGAGTCCTTGC151348547 CCTCGGGGTTC
GGGGCACAAGCCACTTCCGCTCCACTCGAG151722532 CCCCGGGGTTC
GTCTTCCCAATAAGCCCCTTAAAGAGTAAC151821718 CCGCGGGGTTC
CCACCGCGTCCTCGGGCGTCAGGTTGAGTG160208302 CCTCGGGGTTC
GAGTTCTGTCTGTTGAGCGACAGGGATGTG161483695 CCTCGGGGTTC
GAGGGACAACTGATAGCTACTAAATAAATG163337324 CCCCGGGGTTC
GAGCGCCCTGTTCTCGGCATCCCTGAGATT168166040 CCCCGGGGTTC
CAGTGCTAGGACCACAGAGGTCATCACCAT172211586 CCTCGGGGTTC
TCTCAACTGCTTACAGCCACTTCCGAGGAC173027066 CCCCGGGGTTC
GAGGGGAGGACTCTGTACACACAAATCTGG173079277 CCACGGGGTTC
GCAGATGATGGCTGAAGATTTCCAGCCCAT180648621 CCTCGGGGTTC
ACTCTCCAGTGGCTCTCAAATTAGGTGGGG181162529 CCGCGGGGTTC
ATAAGGATGGACCATCTAGAGGCTGCCATA5122886 CCCCGGGGTTC
GAGGGGTTGAGCATGGCAGGAGAACATGAC8841926 CCACGGGGTTC
TAGGATAAGATACAAATTACCCAAGGAAGT15176040 CCACGGGGTTC
GGGTTGTATATAAGCAGTCCTCCCTGGGTG18892336 CCCCGGGGTTC
CAACTTACAAAAGAAAGACTTTGATTTGGG27329685 CCTCGGGGTTC
CTGGGTCAGCCACACTAGCTGGCCAGCAAG31426769 CCTCGGGGTTC
TCTGTTGGTCTTCTTCTGGAATCACTGTAC32823364 CCTCGGGGTTC
CGGCTGGCCCACCACTGCAATGGCCCCGTC34431717 CCGCGGGGTTC
CTTTCTTACACAGAGTGAGGAATGATGGGA39168339 CCTCGGGGTTC
TCCAGATCTTCTGGCTTTCCACATCTTCTT41813222 CCACGGGGTTC
TTTCAGCTTGACTTTACCAGTGAAGATCTG58459593 CCACGGGGTTC
TCTGTCCCATGAAATCACCACCCATTGTTT59691858 CCCCGGGGTTC
AGGTGGAAATTACCATCCATCCATCGGGTC61145205 CCACGGGGTTC
AGTATCTCTATACAAAGATGTTAAGGGATC62770766 CCCCGGGGTTC
GCACTAGGCAAGGAAGAGTGCTCGCCTGAG63748306 CCCCGGGGTTC
GTTTTCAAGAGTGTTTTACCTTAAATAGTT73302934 CCACGGGGTTC
ATGTCGGTGGAAGTCACTACCCATTGGATC82148666 CCCCGGGGTTC
TGATCATCAATGTTTTCATGAAGTCAGAGT85149574 CCCCGGGGTTC
CAGGGAGGCCTCCCAGAGATTCCATCGAGC88050465 CCTCGGGGTTC
CCCGCCGCCAGCCACAGGCTTCCCTCTGGG88122397 CCTCGGGGTTC
GCTCTATCCTCTCCAGTGCTGGGATTACAG89245993 CCACGGGGTTC
ACATAACACAACCAGAAGGAGTGATAGGAG89492559 CCTCGGGGTTC
ATGCGATCTTCAGGAGAAATGGCTACGATT94125098 CCTCGGGGTTC
AGTGGAATTGCTAGATCGTGGTAACTCCAT97845536 CCTCGGGGTTC
ACCGCTGCGTCTTCATCTGCGCCGCCAAAA100396027 CCGCGGGGTTC
CGGGAGGGGCCGGCAGCTCCACGCCGTGTC101831863 CCGCGGGGTTC
ACTAACCAAAAATAAAGGTCTGAGAGTATC104288212 CCACGGGGTTC
CAGAGTCAATGTGAATGACCAACCAACCAA105206364 CCCCGGGGTTC
AAATCCGATCTCAGATTCAGACTGGTCCCG105867192 CCACGGGGTTC
CAGCTCAGTGACAGAGTGCTCCGTCAATTC116504689 CCACGGGGTTC
TGCCTGTTTGTTAGTCCAGTATTTGAGAGA124016189 CCTCGGGGTTC
GAAACAATTCATAAAAGCCTTCCCAAAATC130369389 CCACGGGGTTC
TTGTAGGTGGAAATCACCACTCATCAGGTC131732651 CCCCGGGGTTC
GAGTGGTTCTCAACCTGTGGGTCATGACCC143385603 CCTCGGGGTTC
CCATCAGACGACATGCTTAGCAAGCCATTT143935539 CCCCGGGGTTC
TTGTGGCTCTTACACTTTCTGCCTCCTCTT144770523 CCACGGGGTTC
GAATATGAAAATCAGCTCCCTGAACCCACA149285740 CCACGGGGTTC
CAGGCAGCTTCTCTCTTCAACTCCTCTGTG150268359 CCTCGGGGTTC
TGCCAAACTTGTTCCCTTAGGCCTGCTTGA154256591 CCCCGGGGTTC
TATTCATGAAAAGGTTAGTAGAACGAATTC157998343 CCCCGGGGTTC
TGTTTACCTTGAAGGGTCAAGTTGGGAGTA3318912 CCCCGGGGTTC
TTCGTGCTACAGAGCAGGTTCTGAGTAAGC9685229 CCACGGGGTTC
TTACATTCCTTCCATCCTTCCACCTCCTCT24769284 CCTCGGGGTTC
AGGCACATTTCTGTGCTAACATATGTGAAG29135710 CCCCGGGGTTC
CTGCAGGTGGTATCCGCGTCTCCCGGGAGA32983925 CCGCGGGGTTC
AGAGACAATGACTGCTCCCATGCACATGAT39663610 CCACGGGGTTC
CCTCAGATTCACCCCTAGGGCGGCGCCCGC44711309 CCTCGGGGTTC
AGAAAGGTGTTCTTGATGGTTTCAGGGCCT46932890 CCACGGGGTTC
CGCTTTAGTCCTGCCCCTGCTGTGTTCTGA47850856 CCACGGGGTTC
GCCTCATGAATTTAAATCTAAAGTCTAAGT52697242 CCTCGGGGTTC
TAGCAGATATGGCAGTGGGAGGCAGATCAG56340048 CCTCGGGGTTC
CTTTGTTTTCTTTCCTCTTGCCCAGGCTGC57842517 CCCCGGGGTTC
GAAGCACTGTGGAAGAAAAGACAGGAGAAT58508140 CCCCGGGGTTC
TGGAGGGGTTATCTGTTTCTAAGCTGCTCA58613616 CCTCGGGGTTC
ATGGGACGTGCTAATACCTGTGTGATCTTT70368375 CCCCGGGGTTC
TCCTGGGTTATTTCTGCTCCACCAGCCTGT70516012 CCTCGGGGTTC
ATGTAGGTGGAAAACACCACCCATTGGGTC72548225 CCCCGGGGTTC
ATCAGCAACAGTTATATAATCCAGGAGAAA72713742 CCCCGGGGTTC
AATGGGCACAAACTCCCGTGTTCTTTCTTA87950504 CCACGGGGTTC
AGAGGACGCCAGACCACTTACCTTGGGGAA98705672 CCGCGGGGTTC
AGCAGTACAGGTCACTTTTAACATCTCTGG99537076 CCCCGGGGTTC
TACAGAGCAGGGCCACTTCAAAATCACCAT99755105 CCTCGGGGTTC
CTAGGTTTCCAGAGAAAGAAAATAGAGGTC100451247 CCTCGGGGTTC
AAACTGATATCCCAAGTCCCACATATTCCA106920895 CCGCGGGGTTC
GTGAGCAAGATAAGAGATGAAAGGAATAGA114907134 CCCCGGGGTTC
GGCGCCGCGGGGTCTTGCCTGTCTTTCCGC120126283 CCTCGGGGTTC
TCTTGTCTGGGCGATTTTCACCCACGCTGA130674944 CCACGGGGTTC
ACCCGAGATCAGCCATGGAGGAGCAAGTGG131006316 CCTCGGGGTTC
CTGCGCAGTGAAATCCCTCTGCTTCCAACT132452885 CCCCGGGGTTC
GGTTAAGAGCACTGACTGCTCATCCAGAGG133666858 CCCCGGGGTTC
CTCGGTCCGTCTGCGCATGCGCTTCGCTCT133914127 CCACGGGGTTC
AGAGGCAGAAATAAGCTTTGGATTGAGATA134470070 CCCCGGGGTTC
CTAAGGCCACCTGTAACTACCTTGGTTTTT136597423 CCTCGGGGTTC
TGGTAATGTGCTTGCCTTGCTTACATGAAG138676739 CCCCGGGGTTC
GCAGCAGGTAGCTGCCCTCACTCTGGCCCA139027620 CCTCGGGGTTC
GGGGAACTTGCTGTGCTAGGGCCACCCAGG139041917 CCTCGGGGTTC
GCTTCTAAGCTTGGCCCCCTGATACTCTCC141005230 CCTCGGGGTTC
CTCCCTCCAGCCTGCATTTCAGGACCCAGA141063814 CCCCGGGGTTC
CTCTGACCTGCCCGTCTACACTCGGGGGGC141273865 CCCCGGGGTTC
GAGTCTGGAAGGGGGCTGACTGAGCTGAGT141796682 CCCCGGGGTTC
CCATCTCCCCAGGAATGTCCTTCATCGGGC148862671 CCTCGGGGTTC
GGTTGGGCCGAATGCAGAAGTCATGCGGGG149671311 CCGCGGGGTTC
AGGCGTCTGGGAACCCTTCACCACATGGCA151495929 CCACGGGGTTC
TGGCTCCACAGCCATGGTCCTGGCCCTTCA151874905 CCACGGGGTTC
ACACAGAGCAGACCTGGTATCCCGCAGTGG153625773 CCTCGGGGTTC
TCTTCCCAGGGGCAGGTTTAGAAGTGGGTC154147300 CCTCGGGGTTC
TGTTTACCTTGAAGGGTCAAGTTGGGAGTA3473909 CCCCGGGGTTC
GATACTATCTCTCATCTTTTGCTCCCCTCT10466022 CCTCGGGGTTC
TGTGTTCAATATCTGGAAGTTCAGTAACTC19121786 CCTCGGGGTTC
TGCCTCCATATTTATGAAATGGTACTGACA20760368 CCCCGGGGTTC
GCTGGTGGTAGAACTCAGCCCTGCGTTCTT24798086 CCTCGGGGTTC
TTTAGCTAGAAGTTAATTCCGGTGCCTCGT25305156 CCCCGGGGTTC
TCTGTGATTTTCTTCCCTTGCTTACCCTTG29001545 CCTCGGGGTTC
TGTGGCTCACAACTACCTGTAACTCCAGCT29464593 CCCCGGGGTTC
ATTGTGGTGGTGCTGTCACTGGGCTGGTGG33398757 CCCCGGGGTTC
CGCTGCACTTCAGAGGCTAAGAAGATGGAC34447077 CCACGGGGTTC
CAGATCCTTCATGAGACAGGTGTGCTGGGT35251523 CCTCGGGGTTC
CCCTTCCTTAGTTTGCTCCCCCTTTTGTTG36854400 CCTCGGGGTTC
AGACTTGGTATGCCAGGGCAGATTTGGTAC41242174 CCACGGGGTTC
CGTCCGGCCCGAAGCGCTTGACCTGCCGGC64961062 CCGCGGGGTTC
CCGCCACCCCCACCCGAGCCAGCCCCGGTG65854469 CCACGGGGTTC
CTTCCACACGTACCCACTCCCACCTCTTGG71137304 CCCCGGGGTTC
ACACAGCCCGGGAGGCTTCTGCCTTACATT82801624 CCACGGGGTTC
CTACTTCTCTTTGGGACTTTAGCTGAGGTC97114944 CCACGGGGTTC
CAGTCAGTGAGGTCCCCTGCTTAGCTTCTT101230356 CCGCGGGGTTC
AGGACCCTGGGACTCTGCTATTGAGCTCTG102182073 CCCCGGGGTTC
CTTTTCTACCCAACCTACCCCACACAAGAA105392997 CCTCGGGGTTC
AACAGATTTTTTTTTCAGTAAATAACACAG106509302 CCTCGGGGTTC
ATCTAGAGGAAGACATTTCTCTAAACGACT107090709 CCACGGGGTTC
AGTAAGGGAGCGCCCGCCTAGCATGCACGG107989652 CCTCGGGGTTC
AGGAGAGCATCCACGTGATAAAGAATACTT110557458 CCACGGGGTTC
ACGCAGCTTCATCTTCTGGTCCCCCCCCCC111222184 CCCCGGGGTTC
CCCTCACACACCCCTAGTGCAGCCAGAGCG113916394 CCTCGGGGTTC
CAGCAATGCAGGCCTTTCTCCTCCTGAGGT114937268 CCTCGGGGTTC
CAGGATGGCTTATCTGACAGGAGTCTCTGC116409840 CCCCGGGGTTC
GGCGGGACCCTGCGGTGACAGCAGCGACGA121977068 CCCCGGGGTTC
ATGCATTGTCCTCCCAAGTCCCATCCCACT122215365 CCCCGGGGTTC
ACCGTGCTCCCACACCCCTTGTCCTCAGCA122451559 CCTCGGGGTTC
CAGAGAAAGCAGAGCTGAGTGGAGAGGGAA123332220 CCACGGGGTTC
AGGATGGAGGGTACAGTCTTATGCGATCCA124694767 CCCCGGGGTTC
TAGGAGTTGGGACTTAAGGTGTTATAGCTG125656163 CCACGGGGTTC
TACCATCCGTTTTGCAAACAGATGTGGTGG125814478 CCCCGGGGTTC
ACCTGGAACTCATCATTGCAGCTAAACTGA127435840 CCCCGGGGTTC
GATGCATCGAAGAGGGTGGTGACTAAGCAG127828376 CCCCGGGGTTC
TCCTTTAGATCCCACATAGGGAGTAGCCAG130052371 CCCCGGGGTTC
GAGGTGAGATTCAAATCAAGTTGGGCACAG130934941 CCACGGGGTTC
GAGAATGACTGCCTTCTTCCACTGTATGTG131260949 CCCCGGGGTTC
GAACAGAGCCCTTCACACAGTGCCTCTCTT131485296 CCACGGGGTTC
CACTGGGGCAGCACACTGAGACACAAGTAT134906974 CCCCGGGGTTC
TCGCGCACGAAGGACGACAGGGCCCTCGGG135423130 CCGCGGGGTTC
CAACTTGCAGGAGTTGGCTCTCTCCATCCA137559815 CCACGGGGTTC
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/CCNCGGGGTTCen |
db : mm39 |
k : 0 |
strand : CCNCGGGGTTC |
format : html |
download :
0.006 | 0.006 | search_start;
0.082 | 0.076 | search_plus_done; http://172.18.8.138:28851/match?q=CCNCGGGGTTC&k=0&no_gap=0&offset=0&limit=200
0.115 | 0.033 | search_minus_done; http://172.18.8.138:28851/match?q=GAACCCCGNGG&k=0&no_gap=0&offset=0&limit=0
0.115 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.