— Rational design of CRISPR/Cas target.
2025-07-18 11:10:50, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
CAGGATCAACATGATGATGAGAACTGAGTT3535428 CCTCAGGCT GCCCTCT
GCAACTTGATATGCCATGGTTGATTGATAT3646206 CCACAGGA GCCCT-G
GTCCCACAGTCCCCCAGAGGACTCTCCAAC4534552 CCCCAGGCGCCCA -G
AGGACTTGCTCCAAGGTCTCAGCCCCTCTA4596864 CCTCAGG-GCCCT-G
AATCCCAAGGTCCTCAAAGGACTCTCCATG5513262 CCCCAGGCC CCCTA G
CTCCGCGGAGTCCAGGATCCAAGAAGGCTC6639193 CCGCAGGCG-CCT-G
GGGGTACTATGGAGCAGGCCATCTAATCTC7051085 CCACAGGCGG CCTCT
GGTCCCATCATCTCCAGAAGAGTCTCCATG7869077 CCACAGGCA CCCTA G
CTTGTTTCCCGAGGGATTCTTACAATCTTT7957587 CCTCAGGT GCCC-CG
CAGGGGTCCGCCAGGCCCTAGAGGTTTCTG8445758 CCTCAGGCT -CCTCG
CAACCCACCAAAAACCAAACAACCCCAATG8491523 CCTCAGG-GCCCTA G
CCCCCCCCCCCCCCCCGTAAGATTCGGGGT9009412 G CTCT GGCGCCCTCG
GTGGATTCTCACAGTCAGCTATTGGATGGA9477573 T CACAGG-GCCCTCG
GGGTCAGGCTGTGCATTTGTGCAACACGGG9719604 CCACAGC CG-CCTCG
CAAACACAGCAGCAAGGAGAGCAGCAACCC9840085 CCACAGGCC CT CTCG
GCTGGCAGTCGTCATCCAGGATCTGCTTTC9854033 CCACAA GG GCCCTCG
GCTGGCAGTCATCATCCAGGATCTGCTTTC9931305 CCACAA GG GCCCTCG
GGCCGCCGTTCGAGGGCCGCGCCCGTCCGG10302967 CCTC-GGCGCCG TCG
CCTAGGGCCACAGGAACACCCGCGTCGCTC10303621 CCTCAGGCGCA CCTG G
CCCTCCCATTCTATAGGCTGCCCTCCCATT10581570 CCACAGGCT GCCCTCC
CCCTCCCATTCCACAGGCTGCCCTCCCATT10581590 CCACAGGCT GCCCTCC
CCCTCCCATTCCACAGGCTGCCCTCCCTTT10581610 CCACAGGCT GCCCTCC
TGTCCCACGATCCCCAGAGGACTCTTCATG10584792 CCACAGGT GCCCTA G
CCCAAGATCCCCAGAGGACTCTCCACACCG10585014 CT GCAGGCGCCCTA G
ATTTGACAGCACAAAGCTGCCCTTAGCCAG10650304 CCTCAGG-GCCCT-G
GTTCAGTGGCTCCTGACTCCTTACAAGGAC11335001 CCACAGG-GCCCTA CG
TGAGAACTAAACTTGAGTCCCGTGGGAAAG12852880 CCTCAGGCA CCCTCA
TTGTAAGTGGAACCAGAAGGCTCAGCCTGT13048529 CCCCAGG-GCCCT-G
CCGGTGAAGCCAGCGAGGACCCGAGTGAGA13245061 CCCCAT G-GCCCTCG
TTCCTTTGCAGTGTCGGATGGAACGCTCGT13248097 CCTCAGGCGA CCTCC
CAGAAACTACAAAGTAGGAAAGAACCTCCT13261720 CCCCAGGCT GT CCTCG
CAGGTCAGATGGCTTGTCAGTGTGGAGAGG13558547 CCCCAGGCGG CCT-G
GTGACATTGCTCTGCCTGGCCCCTCATTTT13571980 CCTCAGGCT GCCCTT G
GCAGGGCCAGCACGGCCGCGCCCGCCACCC13659639 CCGCC GGC-CCCTCG
GTTCTGCTCCTGTGAGGGGGCGTTCCTTAC13917024 CCGCAGGG GCCC-CG
CTAGTCACAATCATGGGCTGGAGCTCCGCT14255713 CCACAGG-GCCC-CG
CACTCACCGAGCCGGTGGACATCGCCTATT14825981 CCCC-GGCGCCCA CG
ATATACAGGGTCCTCAGACCGTGGCCGCCC16440315 CCTCAGGCC CCCTCC
CTCCCATAACCCCAGTGCTACAGGGTGTAG17945540 CCCCAGG-GCCCTG G
CCAGGGTCTACGCAGGCTCAGGCTGCAGAG18128854 CCCCA-GCGCCT TCG
CTAGAACCATTCCAATAAAAACTTGCATTG18164238 CCCCAGGC-CCCTCC
GTGGATGCTCACAGTCATCTATTGGATGGA18777299 A CACAGG-GCCCTCG
GGTCCCACAGTCCCCTGAGGACTTTCCATG20728745 CCACAGGCA CCCTA G
CCACTTGGCTCGCCTCTGCGCTCCTTCATT21022075 CCGCAGGCT CCG TCG
GCACCTAGCATCAAGAAACAGAACTGGTTG21145607 CCACAGGC-CCCTCA
GGTGGGGCCACTTTTTCCTTCCCCCCTTTT21644658 CCTCAGG-GCCCTCA
AAATCTCATAAATAAAGACCCTGAAACAGT21762103 CCTCAGG-GCCCTG G
CTCTTCTTTCCTCCTGGTCTCTGACTCAGA22965222 CCTCAGGC-CCCT-G
GGTGCTCTTCTTCCCACCCACCCACTCCCG23820412 CCACAGG-GCCCTA G
TCTATGAAAAATGCAAAATCCTTGCCCGTC24731578 CCACAGGC-CCCTCT
AGTCCCACAGTCGCCAGAGTACTCTCCACA26186631 CA GCAGGCGCCCTA G
GCAATTGGACAGCATCCTGCTCACGTTAGG26938041 CCCCAGGC-CCCTCT
CAGACACTCCTCCCTGCAAAAGGTATCTAA27229399 CCTCAGGCGCA CCTT G
CCTGGACCACCAGACCAGGGATGGCACTAC27961073 CCACAGT GCGCCCTCC
TCCCTAATGTTCCCTATAATCACCACCCCC28591958 CCCCAGC CGCCCT-G
CCATCTCCCTTTACCTTCTCCTTCCTTTGG29643092 CCCCAA GG GCCCTCG
AAATCGTTTGAAAAAGTTATATGCTACAAC29821379 CCACAGGC-CCCT-G
GATTTGATCACCAGACTGCTCAGATGGTAT30812107 CCTCA-G-GCCCTCG
CCAAATAAAGCCCATTCCTTGATTATCATC30947205 CCCCAGA CGCCCTT G
TTTTTCCTTCTGAGCTCAGGTACCTGTTGG32763949 CCACAGG-GCCCTG G
CCATGGTCCCCAGAGGACTGACTCTCCACG33590570 CCGCAGGCA CCCTA G
GGAAGCGGAAGTGATGCGCAGAGGTCCCAC33708902 CCCCT GGCGCCC-CG
TGTTGGGTTTTTTGTTTTTGTTTTCCAGAA33709205 CCCCAGGT GCCCTCT
AGCTGGATGACAAGCTCAGCAGCGGCCTCA34264873 CCTCAGGCGCA CT-G
GTGCTACCTTCAGAGACGCAGTGCAGATCC34524849 CCCA AGGCGCT CTCG
TTCTGACACCAGGGCCTCTCCTCTGATGTT34572675 CCTCAGGC-CCCT-G
CCAAGACTATCAGCCCAGAGAAGGTACCAC34746371 CCACAGGG GCCCTCC
TCTCTTCCTTCTCCTCCGAAGCCTGCGTTC35866090 CCCCAGGCA CCCTA G
CATAGAGATGGTTTTGTTCTCCCAGCTCCT35959349 CCCCAGGG C CCCTCG
TCTGAACACAAAGCGGCCACAAGACAGTGG36077823 CCACAGGCGCCCTCT
ATCCAGGGGACCACAAATGGCCAGGAAAAC36219280 CCACAGGG A GCCCTCG
TACACATATCTTCTTCCTAACCTGTCCTGG36442292 CT ACAGGCGCCCTCT
ACCACCACCTTCAGAACTGCCAGCCTCCGC36598025 CCACAGGCGCT CCTA G
TGACAGCTTTATCCAATCCTGCAGGGCTCT36630312 CCACA-GCGCCCTCT
TGCTCCTCCCCACCCCGTCACGTGGCAACC36722262 CCCT AC GCGCCCTCG
ATCTAAGCTAGGGCGTGTGCATGCCTGTAT37555499 CCCCAGT -GCCCTCG
CTGGGATTCACCAACATGACTAGCCCTCCA37588096 CCGCAGG-G-CCTCG
CGACGCCAGCGGCGGGACTCGGAGGCAGGG38168306 CCGCG GGCGCCC-CG
AGGCCTCGCGGCAGCACCGCGAGCCCCCGG38168453 CCTC-GGCG-CCTCG
AAGAGGGCATAATCATGCTTAAAGCCACTG38548277 CCCCAGGCGCCCTCT
TCACGGATGCCTCTGGGGGTCTGATGAAAG38646225 CCGCAGGCT CCCTCC
AGAGGGGAGCCAGACCGATTGATTCCTGGC38806295 CCACA-GCGCCCT-G
TTGAACCTTTTTTTTTTTTTTTTCTGCTCC38875797 CCGCAGGCGG CCC CG
TGGCCTTCTGAAGAGGTTTCATTTGTACTT38926589 CCACT GG-GCCCTCG
GATTTCCCTCTGTCAGAAGTGGTCAATTCT38976047 CCACA-GCGCCCTCG
TAAATCTTCTGGGGAGAATGTAACACTCAG39544772 CCCCAGGC-CCCT-G
GACAGCTCAGAGACCACGCGGCCCCGCCCT39574683 CCAC-GGCGCCC-CG
GCTGTTGTTTTTGACACAACATATTATGTA39634876 CCCCAGGCT GCCCTT G
ATCAGCAAAAGCAGCCTGCTGGCCACAGCT39734588 CA GCAGGCGCCCTCG
ATGCTCCTCACTCCAATGCCCAAGCCTCAT39811290 CCACAGG-GCCCT-G
CAAGATGTGCAGAGCCCAGGAGAGGTTCCT39893839 CCCCAGGT GA CCTCG
GCTTGCTCTTGAGTGGCTGGGTTCCAGGCC40063021 CCACAGGC-CCCT-G
ATGGCATTTTCTAGGGAAGGATAGCTATGG40770109 G CTCAGGT GCCCTCG
CATCCCTACAGCTGCTATAGACCAGAGATT41476914 CCTCAGG-GCCCT-G
GTTTCCATGTTTTTATCCTGTCTTTTAAGA41941053 CCTCAGT CT CCCTCG
TCTCCGAGTCCGCCTGCAGAGGGCGCCCTC42724146 A CGG AGGCGCCCTCG
TTGATTAATGTAATCCTGGCCCAGGATCCG42725176 CCTCAC GC-CCCTCG
CAGCAGCCGCCACAGCCGCCGCCGCCGCCG42736732 CCTCAGG-GCCC-CG
GCTTCAAATAGCCCGAACACTGAGCCACTG42794506 CCACAGGC-CCCTA G
TTAAGTAACCCCAGTTCTTGTGCCTAAGGA42931082 CCACA-GC-CCCTCG
GCGGCGGGTGGCAGACGCCGCGGGCCCCTC42992229 CCCCAC GCT CCCTCG
TAAAATCCATCCTTTGAATGTCCCGCCCGT43169793 CCTCAGA C-CCCTCG
TCAAGTCCTGAAGTCTCCCCTCAAGCCTTC43202653 CCCCAA GCGCCCTCC
TAGGAAGGCCATTATCTTCCGTCTTTCTTC43241840 CCTCAA GCGCCCTCA
TTGTTCCTCTTCCTGTAAATCTACTGCATT43276732 CCTCAGGCC CCCT-G
AGGAAGGGAGACATCCGTCCTTGACAATTT43402557 G CCCAGGCT CCCTCG
GCAGACGTGGGGAGACTGCTGGACGCTTTT44299224 CCACAGG-GCCCTG G
CCTTCCATACTTATCCAAAAACTTAACACT44727624 CCCCT GG-GCCCTCG
CAGCCTAAAGAAGATGGTGAGCACTGCACT45130044 CCACAGGCGCCCA CC
GTGATCGTGGTGAAAATGGTTCTCCTGGTG45382585 CCCCAGGCGCT CCTG G
AAAGCAATGGAGAAAGCTACCTGGTAGTGG45792426 CCTCAGGCT CCCA CG
CCGGGGCCTCCTTGGCAGAGACCTTCCCCT46541688 CCCCAGGCT CCCT-G
CATTGGCAGGCACTCCTCTTGTTCTCCATC46551254 CCACAGGC-CCCT-G
CGGGGTGCGGGGCCTTTCTTTGCCCCTCTT48101303 CCCCAGGCC CCC-CG
CAATTAGCCTCAGTTTTCAGTACTCAGTTC51858813 CCCCAGGC-CCCT-G
TGTTAGACTACTTCCTGCGGATTCGAGGCT52185006 CCTCAGG-GCCCTA G
GGAGGCTCGGGCGGAGGCGGGCGGCGGCGG52539562 CCCCG GGCGCCCTCC
GGCATGAGATCAGTGTTCTGACTAAGGGGT52564076 CCCCAGGCA GCT CTCG
TTTGGTGTTTGAAACAGGCTCTTGCTCTGG53339842 CCCCAGGCT GCCCTT G
GCGCGGAGCCATGTCTCCCCGCGCTCGGGG54234017 CCCCAGGCG-CC-CG
TTTATGTCAGTAATGTAAAGGAAAGGGCTG54369396 CCACAGT CGCCCT-G
GATCCCAAGGTCCCCAGAGGACTCTCCAGG54708349 CCACAGGCGT CCTA G
CAAAGCTGGCTTGAAAATACCTCCTGGACT54889386 CCCCG GC CGCCCTCG
TCTCAGAGTAGTAGAAGCAATTGCCATGAC54895025 CCACAGGC-CCCTCT
CCGCCCGCGGCGGCTCCTCGCAGCCCTCGG54965651 CCCC-GGCGCCCTCC
ATTTTATAAAGGGATGGGGTCCTGGAGGGG55218342 CCCCAGGCGCT CTCT
AGCCCTGGCTGTCCTGGAACTCCCTCTGTA55246877 CCCCAGGCT GG CCTCG
AATCATGTTCCCCTCTTCCCCTCCCTGGCC55639459 CCTCAGG-GCCCTCC
AAAATGAGATTTGGAGGCCTAAAGAGAAAG55828383 CCACAGGCT CCCT-G
CCTCTGACTGTTCCACATCCCATACCTCCT56656105 CCCCAGGC-CCCT-G
GATCAGAAAGCCCTGGAGAGGCATTAGCCT56882383 CCTCAGGCA CCCT-G
ATAACTCCCATCTCGAGGACAACCTGTTCT56998243 CCTCAGGCT CCCTCA
CAAGTCCAGGGCGCAGCCGCCTCGCCCAGC57011487 CCCT AGGCGCA CTCG
AAAGCTTTCAAAATCACTTGTATCCACAGA57116130 CCTC-GG-GCCCTCG
AGTTCGATGGTCCCCAGAGGATTCTCCATG57216384 CCACAGGCA CCCTA G
TGTAGTAGTCTAGGCTGGCTGGTTAGCAAG57473403 CCCCAGGC-CCCTCC
GATGCTCCACGATTGGTAGAGCGGAGCAAC58009286 CCGC-GGCGCCCC CG
GATTCTATGCTAATCTAAAGGAACAGGAGC58379129 CCACAGGC-CCCT-G
GTTCTCCTCTCCTTATTGTCCTTCACCTGC58396962 CCGCAT G-GCCCTCG
AGGAGACAAATGGATTCCCCCATGTTCCAC58421821 CCACAGGCT CCCTCT
CTTCTCTCCTTTGCTTCCTGTCCTCTTCCA58679832 CCACAGG-GCCT TCG
CTCACCACCTTTGGCAGGCAGGAGACCTGG59111121 CCCCAGG-GCCCT-G
CTATAAACACCCCTTCCTCCCCATCCTTCG59422140 CCCCAGG-GCCCT-G
GCGGCGGCGCCTCCCTGTATCCAAGCCTCT59522062 CCCCA-GCG-CCTCG
CCCGGGGTCCCAGGCGGCCTGGCCCGACTC59709703 CG CCAGGCGCCC-CG
AGCGGGTGAGGCGCAATGGGTCTCCCACGC59952360 CCGCC GGCGCCCTCG
GCGGCGGCAACAACGGAGGCAACGGAGGCG59952525 CCTCAGGC-CCCTCG
GCAGGGCCGACCCTCGGCGGAGAAGAGGAG59952886 CCCCA-GCGCCC-CG
ATCCTCAGCACCCAGTGTCCAGTGCAGACT60072822 CCACAGGA GCCCTCC
TTGCCTTGTGTGTGTTGCCCTGAGTTTATC60427755 CCCCA-GCG-CCTCG
AGCCAGTCCCTTTCCACCCGCGGTCCCCGG60605405 CCACC GGCGCCCTA G
TAGACACCCTTTTCTTTGGGGTAGGCTCTG60744547 CCCCAGGCGCCG TCT
CCCTCCTGATCCTGAATCCTCCATTCTCCT60880167 CCCCAGGC-CCCTCT
TGCTCTCCTTCTCCCATGACTTACTGTAAA61426936 CCACA-GCGCCCTCT
ATTCCCATGAGTTGAGTATCCTCCCTGCCT62412203 CCCCAGGC-CCCTT G
TGCTCCTTGCGCTGCAGGTAGACCTTACTT63152091 CCCCAGGCGCCCA -G
TGTCTCAGCATATGGACGGCTCCTCTACTG63183016 CCTG A-GCGCCCTCG
GGTGAGGGGTGGGGGGAGAGGGGGAGATAC63193964 CCACAGGA GCCCTCA
TGCGCGCCCAGCCGGCGTGACCGGCTCCGC63485299 CCGCAGC CGCCC-CG
AGAGTTTTTAAACACCCGTGGTGTCCCTAT64159037 CCCCAGC CGCCC-CG
CTGTGAAGAACAAAGCAGCTATGGCCCTGT64924090 CCTCAGGCT CCT CTCG
CATCCACTAGGCACAATTGGCTAGTGCATA65327342 CCTCAGC C-CCCTCG
AATCTGTCAAGCTCGCCTTGTAGCTCGGCC65563149 CCGCAGGA GCCC-CG
CTGGAACTCCCCCAAGCTACTCTTCACGTA66464461 CCCCAGGCA CCC-CG
TGGCTCTGCGCCTTTAGTGTGCATCAGGGA66545449 T CAG AGGCGCCCTCG
TTAGGACAGAAGCTGCACTTGGCTACGATG66880415 CCTCAGC A CGCCCTCG
ATGGGGAGCAATAGAGCAGGTCTTCATCGC69770982 CCGCAGGCGG CCTCT
AGTTAAGAGATGCACTCGGGTGGATTAGTT70449726 CCCCAGGC-CCCTCT
AGCTCCCTGAATGACCAACAACCACTCCTA70583019 CCTCAGG-GCCCTG G
ATTGATTCTTTGTGAGGTTCATATTATGTA70646310 CCCCAGGCC CA CTCG
AGGACCTTGGGGGTGTCCGCAGACTCCGTG71191236 CCCA AGGCGCCC-CG
GTGAGCACTGCACAGTACGAGGGAGGAATA71471500 CCACAGGC-CCCTCG
CCCACGGCTGCCCTCTAGGGAGCGAGCGCG72251517 CT CCAGGCGCCC-CG
TATGTGCCTAGTTGGCTTTGAATTCATGAT72727354 CCTCAT GCGCCCTG G
CACCCGTTCCCTGTGCCTCTGCTCTCTCTG73223245 CCT--GGCGCCCTCG
TTCTCTGAGCAATCTTTTTGGTTCCCTCTG73438403 CCTCAGG-GCCCT-G
ACTGACTTCCTCTGAGACCTGGGACACTGT73491683 CCTCAGGCC CCCTCA
TCCAGCCCTTTTGGACAGCAGAAGATGTGT73537165 CCACAGG-GCCCTCC
GCAGGCTACAGTTCTCAGGCTGAGTGTCCT74002186 CCTCAGGCT CCCTG G
TCTGTGCAGGCATGGAGACCTGCGCTCAGA74248722 CCCCA-GCGCCCG CG
TGCTGACCTCCTTGTAGGTGTCTTGGCTGA74672777 CCTCAGG-G-CCTCG
CGAGGTGGGCGCACGGCTGCTGGAGCGCTT74823423 CCAC-GGCG-CCTCG
GGGCCCTGGCTGGTGGCGGCGTGCTGTCCC74990586 CCTC-GGCG-CCTCG
CCAGCTACTCCCACTTCGCCCCATCGGCGT75364644 G CTCAGGA GCCCTCG
CGGTGAAGGGAAGGAAGGGAGAGAAAACAG75415935 CCTCAGC CGCCC-CG
ATCATCCCACTCGGCAACAACCCCCCACCC75422904 CCCCAT GC-CCCTCG
TGGCCAGCTGACCTTTGACCGTCACATTGG75480359 CCACAGT GCGCA CTCG
TGTTTTAGAAATCAAATTCAGATTCTTCTA76885513 CCTCA-GCGCCCTCC
CAGAACATATGTTGAAGCAGGGTTGGAAAA77166112 CCTCAGG-GCA CTCG
ACCCTTTGTCAAAGCCAGCTCCTCCATGAC77389559 CCACAGG-GCCCTCC
CTATGACTAGGGACTTCAATGCCTCCTCGG78144296 CCTC-GGCGCCCTCC
TTAGGACTGAGGGGCTGAGGGGACCATGGT78185056 CCTCAGGCGCCT TT G
GCCCAAGAAACAGGGAAACACAGGCCTGCT78759775 CCACAGGCA GCCC-CG
CCACCTGTGGGTCCTGCATATGATCTAACT79407315 CCACAGGCA CCCT-G
AGATCCATCAGTGCTTCAGCTGTGTATAAT79521844 CA GCAGGC-CCCTCG
GACTAAGCAAGCCAGAGCATCAGCTCCTGC79600171 CCCCAGG-GCCC-CG
GCCATGGCTTCTGCTGTATTCCGGTTGCTG79753877 CA GCAGG-GCCCTCG
CCTTTTCCCTTCAGCCCTGGGCCAGAGTAC81176398 CCACAGGCGCCCA CT
ACGTGCCAGCATGATGACCTGAGGTAGCAT81970019 CCTCAGGC-CCCA CG
TTACTGGGGTCTATAACCTTTTGACTATGC82355276 CCACAGGC-CCCTCC
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/2/CCNCAGGCGCCCTCGen |
db : mm39 |
k : 2 |
strand : CCNCAGGCGCCCTCG |
format : html |
download :
0.007 | 0.007 | search_start;
0.083 | 0.076 | search_plus_done; http://172.18.8.138:28851/match?q=CCNCAGGCGCCCTCG&k=2&no_gap=0&offset=0&limit=200
0.118 | 0.035 | search_minus_done; http://172.18.8.138:28851/match?q=CGAGGGCGCCTGNGG&k=2&no_gap=0&offset=0&limit=0
0.118 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.