CRISPRdirect — Rational design of CRISPR/Cas target. 

0 mismatch/gap   |   ≤1 mismatch/gap   |   ≤2 mismatches/gaps   |   more:

Search for: both strand plus strand minus strand

2025-06-21 22:44:48, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:5298194-5298208
ACACACACAACCCCCCCCCACCCCACTGCA5298194ACCTGAACCTCGCTGAACCAGACCTCAACTTTGTTGCCACTAAGG
chr1:5508698-5508712
TGCCAGTGATGGAAGGAATGTGTATAGGTG5508698ACCTGAACACCAAGGTTTATATTTTAGAGGTTAGGTAGGCACTCT
chr1:6161917-6161931
TTACACTCTCTTTACTTCTTGCATGGGGTT6161917ACCTGAGCTCCGAGGAGAAGAATTTGATGGAGACATTGAATTTAG
chr1:6739578-6739592
AGGATCCCAGAATCACAGGATCACAGAGAC6739578AGCTGAACTCCGAGGAGTCCTGACACAACCAGGATCACAGGAAGG
chr1:8388435-8388449
ACACAATAGGAAGACCAACAGTATCAACTA8388435ACCTGGACCCCTGGGAACTCCCAGCATCTAAGCTATCAACTAAAG
chr1:8681140-8681155
AACCTGATCTGGTATTTGGTGAGAGAAAAG8681140AACTGAAGCCCCGAGGGGCGAGCAGAAAGAATGGAAACAGGCAACT
chr1:8964467-8964481
AGGTTCGCGGTCCCCCTCGCACCCACGAAT8964467AACTGAATCCCGCGGGACGGGATATAGTGGGATTGCTTCAAGTTT
chr1:9526874-9526888
CATGGGAAAAAAAAACAGAAGAACAATGGC9526874ACCTGAACCTCGTGTTTTACATGCTGGAACAGAGAGAGAGTGTGC
chr1:10074093-10074107
TGGGCTTTCCTGGAATTTGCTGCGTCTTCT10074093TCCTGAACCCTGGGGTTGGAGACCTATGTATGCCAACACAAAGCA
chr1:10109255-10109269
ACAGGAATTCGAAGGCTCTGTAGCTGCTTC10109255ACCTGGACCCCGGGGTTTTTGCAGTTCTGGAACTATGTAGTCCAG
chr1:10878000-10878014
TACTACAGCAGGCCACAAGCATTCCAACAT10878000ACCTGAATCCCAAGGAAAATATTTTAAAAAAGCCTGTATGGATAT
chr1:11381329-11381343
ACTCCACAGGAAGACCAACCGAGTCAGCTA11381329ACCTGAACCCTTGGGGGTTCCCAGAGCCTGAATCACCAACCAAAG
chr1:12219962-12219976
CACTCCTTCCACTTCCTCTTTCACATCTTT12219962ACCTGAACCTTGAGGGGAAGAATTTGATGAAGACATCCCATTTAG
chr1:13164934-13164949
ATGATTGATCTGGGCTATGCCCCACCTGTA13164934ACCAGAACTCCCGAGGATTCCGGCCTGCCTGTTCCGGGAATGGCGA
chr1:13787637-13787650
TTTCGCCTTTTCTAGGGGTTTGAGGATAGG13787637ATCTGAACCCC-TGGTAGGTGCTGGAGATATGTTTCAGTGTAGTA
chr1:14230300-14230314
GTGACATGATGAAGCTATTGCCCATGAAAT14230300ACATGAACCCAGTGGTTTGAATTCTTAGTGGTTTCCAGTAGTCAT
chr1:14826358-14826372
GCGTGGAAGGGGTGGGGATCGTTTTTTCCC14826358CCCTGAACCCTGCGGTTAGCGGGGCGGGGGCAAGGAATGTTTGCG
chr1:15058259-15058274
GGTAATAACCAATGTTCACTAGAGCAGGAG15058259ACACTGAACCACGAGGCACCGCTCTAAGGGGCCACCAGTATTGTTG
chr1:15135748-15135761
AAGAGATGCCCATGATCATAGAAGAAACCT15135748ACA-GAACCCCGAGGAGACTGGACCAAAAAGAAATTTCTCCTGTC
chr1:15378576-15378589
TATGAACACTCTGGAGTGATAAGACATGAT15378576CCCT-AACCCCGAGGAAATTGACAGATTCATTATTAGAAGTAAAA
chr1:16395250-16395264
GAGAGACCTTGGATACAAGATGGCAATCTC16395250ACCTGAGTCCCGGGGTCAGAGCCCTCCCTCCCACATGCTCATTTT
chr1:17174653-17174666
CTCTAAAAAAAGCAAACAAGTAGTTAAAAG17174653ACCTGAAT-CCGAGGATAAAATGTATGCATGTGTATGAGCATCTG
chr1:17716267-17716280
TCTGGGTCTGGTTTCAGTTGGAGGAGATGC17716267ACCT-AACCCCAGGGTGTTTAAAAGTCTGGTGGGAAGCCGGGCGT
chr1:18052290-18052304
CACACACAGTTCACACTCAAGAGTTGTTTT18052290ACCTGAACTCTGAGGAGGAGCAAGGAAGATTGCAAAGAAAACTAT
chr1:18540914-18540928
TTATCTAGAGTATCTTCTATCATCAATTGT18540914ACCTGAACCACAGGGGCATTCAACATGCTCATACTCCTCAATATA
chr1:18830118-18830131
GGTCCATGATTCACCTTGAAAGAGATAGAA18830118ACCTGAATCCC-AGGCTACACTCTAGACTTAACAAATCAGAATCT
chr1:19251458-19251471
ATTCTTTCTCTATACATCGTGTTTCCCACT19251458CCCTGAACCCC-AGGAGGATCATATTCATGGCAAGAGAAGTTCAA
chr1:20037777-20037791
ACCCCACAGGAAGACCAACAGTGTCAACTA20037777ACCTGGACCCCTGGGAGCTCCTAGAGACTGAACCACCAACCAAAG
chr1:20406081-20406095
ACACCCTAGTAAGACCACCAGTCTCAACTA20406081ACCTGGACCCCGGAGATCTCTCAAGACACTCAGCCCAGCCACACA
chr1:20637736-20637750
ATGGAGAACTGGCATTAGGAACTATCTGCC20637736ACCTGTACCCTGGGGTGGCTTCAGTCAGCTCCACATCCTTAGTAG
chr1:21004813-21004827
CAGTTTTCCTCTCTTTCCTTCAGGTTGTCT21004813AACTGAGCCCCGAGGAGCCCAGGGCCACCGCTGTCATGACGACTG
chr1:22338507-22338520
ACCTGAACCTGAATGGAAATGACCTCATTT22338507ACCTGAACCAC-AGGCATGCCGGGAACGTGAGAATGTACCTGTGT
chr1:22546078-22546094
ACATGGAATCGGTAGTTGAAAAATACCAGA22546078ACCTGGAACCCCAGAGGATGAAGAGTCACTTTACAAATAAATTTACT
chr1:22968557-22968569
TTTGCAGATTTTTTTGTGAATAATTTTCTG22968557A-CTGAA-CCCGGGGCTCACATGTTTGTCTAGATTGGCTGACCAG
chr1:23196988-23197002
AACTAAAAGGATAGTGAGTGCAGAGGTATC23196988ACCTGAAACCCAGGGCTCTTACTGTGAACAGCAGCAGAAATGGAT
chr1:23800762-23800776
GATCTCCAAAGACCCTGCAGCAGTTCAGTG23800762AGCTGAACCCTGGGGCGATCTGAAAACAGCACCCACCACCTCCAC
chr1:24030776-24030790
GCAACCCTGTAGGTGCAACATTATGAACTA24030776ACCTGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAA
chr1:24249128-24249141
ACTGGTGCCGAGGAAGACTGAAGGCTTTGA24249128ACCT-AACCCTGGGGAGGGAGCAGGGTCAAGGGGAGAGAAGGCAG
chr1:24276286-24276300
GCTTCCTGGAGTGGAAGGACCAAGAGGACC24276286ACCTGGACCCCGGGGCATGCAGGGAGATCAGGGTGCCACTGGGCT
chr1:24559047-24559061
CTGGTCCCTGCCATGGACTCTGCTTCCCCT24559047ACCTGAACCGCGTGGTTGGGCCTCAGTGAGAGGCCTTGCCTAGTC
chr1:25357751-25357765
CTGTATCTCTGCTTTCTCTTCGGCATTAGT25357751ACCTGAGCCCCGAGGAGAAGCTAGGAAGAAGGCAATCTATTTAGG
chr1:25472904-25472916
TTTTAACAATATTAGTTGTATAAATATATT25472904A-CTGAACCCC-TGGCTTGGTTTCAAATTAAATTGGTTATGTATT
chr1:26361675-26361688
GAGGATCAAGGATGATTCAAATACTTAATG26361675ACCTGAAGCCC-TGGCAGCCAGATATATTCATTTCCTTAATAGCC
chr1:26975059-26975073
TTGAGAAAGGCTAGCAGTCTCAAATAACTA26975059ACCTGGACCCCCGGGGATCTCTTAGACACTGAGCCTCCAACCAGG
chr1:28149111-28149125
AGGTTTGCGGTCCCCCTCGCACCCACGAAT28149111AACTGAATCCCGCGGGATGGGATACCTGTGGAGGCTTGGTGGCCC
chr1:28935788-28935802
TTAATGACATTTTAAAACAGTTTTATACCT28935788ACCTGAGCCCAGGGGTATGCTGAAATTACTGATTATCAAATATTT
chr1:29158071-29158086
GCTCCTGAAACCAAGGACCCCATGGTAACA29158071ACCTGTAACCCCAGGGTTATGGTAGAGATGTCATAGGGAGAGAGCT
chr1:29524911-29524925
TGGAAGTGGGGTGGTGCGGAGAGCACGCGG29524911ACCTGAGCCCCGCTGTACTGAGCAGCGATGAGGGCCTTGAAGGCC
chr1:30068525-30068539
ACCCTATAGGTGGAACAACATTATGAACTA30068525ACCAGAACCCCGAGCTCTTGACTCTAGCTGCATATGTATCAAAAG
chr1:30124929-30124943
CGATGTCATCTGACCAAGACTGAGTCTCTG30124929ACCTGGAACCCGTGGGGCACTGCTGTGGTCCCCGGTGTGTAGGCT
chr1:30217229-30217242
ATGGAGAGTGGAGGAATTGCAACACATGGT30217229ACCTGAATCCC-AGGAAAGCACTTAATAGGACATCTGTAACAAAA
chr1:30706413-30706427
CTGACCTGGGGCAAAAGCCCCTTCTGCTCT30706413ACTTGAGCCCCGAGGTACCTTGTCAGTGGAGGCGCCCAACACCCG
chr1:32448091-32448105
GAAACCACATAGAACCAACAGTGTTAACTA32448091ACCTGGACCCCTGGGAGCTCTCAGGGACTGAGCCACCAACCAAGA
chr1:32577863-32577877
ACCCTATAGGTGGAACAACATTATGAACTA32577863ACCTGTACCCCGGAGCTCTTGACTCTAGCTGCATATATATCAAAA
chr1:33631286-33631300
TGGGGCCTGCATTAGTCAGACCATGGGAAA33631286TCCTGAAACCCGGGGAAACTGAACTCGAGAGCAGACAAACAAATA
chr1:34239701-34239716
GTTGAGGTCACCACCTCATGTTCACTACAA34239701ACCTGAGACCCAGTGGGGCCAGACGTCTCCACCACTCTCCCTCACA
chr1:34504315-34504329
AGGTTAAGAGCACTTGTTACTCTGTAGAGG34504315ACCTGAACTCCTAGGTAGTACCTACATCAAGTAGCTTATAATTAC
chr1:34520440-34520454
ACCAGCATCTCCAGGTTATTCCCCCAACAA34520440ACCTGCACCCCCAGGTTACAAGCCCACCAATGCAGAGGGGAGCAG
chr1:34521198-34521211
ACCCGGGCCAGACTCCGACCATGTTCCTTA34521198ACCT-AACCCAGTGGCCCACTATCACCTGCATCCTGATAATCTGG
chr1:35353700-35353713
ACCAATGTCTCCAAGTTATTCCCCCAACAA35353700ACCTGCACCCC-AGGTTACAAGCCCATCCCTTGCTTAATGGCCAC
chr1:35425613-35425627
GAATAAACTGCTTACCTCGCAAACTTGAGG35425613ACCTGAACCACGAGTAAAAAAGCAAGGCAGAGTGATGGAGACAGG
chr1:35443403-35443416
AGAAGCTCACTTGTAGCAACAGTATTTGAA35443403ACCTG-ACCCCTAGGATGAAGGATAGGGAACTTGTGAACTTCTGC
chr1:35608714-35608728
TCCCTTAATAAGAGGCAAGAGCCTGGAAAC35608714ACCTGAACCCCCAGCCCTGACCACCAGCAATACATTTACACGGGC
chr1:36049302-36049314
CCAAGAGGGGAATCCAACTTTTCCTGTACC36049302ACCTG-ACCCC-AGGAATGGACACCAAAATCCCCATAACAAGAAG
chr1:36136947-36136962
CCAGATTGATAAATGTGACTATTGCTGATA36136947CCCTGATACCCCGGGGCCCTATAGCCCTGAACCAGGAGCCTACCCT
chr1:36295730-36295743
AACAGCCACTGTTCCTTGTCTCATTGTGAG36295730ACCTGAACCCT-TGGTTTTGTTCTTTTGAGACAAGGTCTCTAACC
chr1:36565560-36565575
ATCGAGTTAGAACCTTGGATGCGTATGCTC36565560ACCTTGAACCCCCAGGGCTGTGGTCCTGAAGTGGTTTTAACCTCCT
chr1:36587946-36587959
CCTGTCAGAAGAGCGCAAATATAAAATACC36587946ACC-GAACCCGGAGGGCAAGTGGGAGGCCCTGCCCACCCCTCCCC
chr1:36639202-36639214
GATCCCGTGGGATGTGGTTGAGAAGCACCC36639202ACCTG--CCCCGAGGCGTCACATCCAGGAAGAACTGCACGAGGGC
chr1:36652121-36652134
GAGTAATAGTGACAGAATATGCTCATATAG36652121ACCTGAACCCA-TGGTGGATCTCAGAAGCAAAGGAATGGATGCTT
chr1:36700381-36700395
GGAATGGCTAGCAAAGTCATCTGCAGCCAC36700381ACCTGAAGCCCATGGGATGCTCTGTCCTTAGTGGAACTCCTTACA
chr1:36739875-36739888
CATGGGTGTAATCTAAGGCCACGCGGCTCC36739875ACCTG-ACCCCGTGTCCTCTCCGAGCACTGCAAAGTCACGGCTAA
chr1:36827408-36827420
AGGATTGTAAGCCACCGTGTGGGTGGTGGG36827408ACCTGAA-CCC-AGGTCCTCTGCAGGAGCAGAAGGTGCTCACAAC
chr1:37102633-37102648
CGGAAACTGAAAGGGAGACTCCCTCCAGGT37102633ACCTGGAACCCCGAAGGAGCAGTATCACTTGTAACCTTAGTCATTT
chr1:37117582-37117597
CTGAAGAAATCAAAAGAAATGGACAACAAG37117582ACTCTGAACCCAGGGGCACCAGACTCTCCGAGCGTCCATGTCTGCT
chr1:37274467-37274481
TCCCTTCCAAATGCTGAGAGGGGAAGGAGC37274467ACCTGAAACCCCAGGAATCTGCTGGGGTTACTGCTGGGCCCTGTG
chr1:37422279-37422293
CAGGAATGCCCTTGGGAAACTGGGTAAGAG37422279GCCTGAGCCCCGGGGCCTCTTCTCCATGTGCTGAACCACCTTGCT
chr1:37579661-37579673
AGTTCCCCGCAGGCAAGCGGCCCCCGCCCT37579661ACCTG--CCCCGCGGCGGCGCCACCTCCAGCCCCCCAGCCCCCCA
chr1:37751322-37751336
TAATACCAGATAAGACTCACCTACCACAAC37751322ACCTCAACCCCAAGGCCTGCGTTTTCTCATGAAGATCATGAGGAA
chr1:37766540-37766555
ACAATTGGACAACATATCTGCATTCCAGCT37766540ACCTGGAACCCAGGGGGACCCTGTCAAAGTTGAAACAGCAGTAAAT
chr1:37951905-37951919
AGCTCATTTGGTAGAGTGGTTGCCTAACTT37951905ACCTGAAGCCCTGGGTATTTATCACTCAGGAGACATAAACTGGGA
chr1:38194900-38194913
AACCTGTCTTCACCGTTGGGAAGAAGGGAA38194900AGCTGAACCCC-AGGCTTGCCAAGGAACACAGAAAACACTTCTGG
chr1:38279922-38279936
GTTTTAAGAGATTAAGTAGGGTGGAGAGGA38279922ACCCGAACCCCGGGCAACCAGCCTGTGGTGAGGCAGACCTTCCCA
chr1:38385516-38385531
AGGAACATGAGGGAAGGAGGACCGAGTCCC38385516ACCTGTAACCCAGAGGCTACTTGTGATTGATGGCTGCTGAGAGAGA
chr1:38576176-38576190
GGATGAGATTAAAGCTGGGCTCAGCAGGCC38576176AGCTGAACTCCGTGGCTGAAAATCACGTTCTTCCAGAGGACAGGT
chr1:39447609-39447621
TGTCTCTATGTCTGCTTTCTCTCTCTTCTG39447609ACCTGAA-CCC-AGGACACAGAGCATCTACTTGGCCCCTCAGCTG
chr1:39558681-39558696
ACTAGAGAAGTTTCTCTGACTGTGTAGAGC39558681ACCTGAAACCACGAGGACGAGACGTAGCGTCCCCTCCTGAGCGTGA
chr1:39685342-39685356
CAAGTGTGGCTGGCTGCACATTGCTCCTGG39685342AACTGAACCCCATGGCTTGTCTTCCAGAGCAGTGCACTCTGGGTT
chr1:39787887-39787901
CAGTCCTCGCACTTCCTCAGCTGAAGAGAT39787887CCCTGAGCCCCGAGGGGAGGGTTTGATGGAGACATTCCATCTAGG
chr1:39885062-39885076
ACAGTGTGACCAAAATAAACTCTAAAAATA39885062ATCTGAACCCCAAGGCTGGCTTCAGACGGTGCCAGGTTCCCATAA
chr1:40024283-40024298
TGGCAATTATTTGTGAATGAAGTTGTTTGT40024283ACATGAACCCCAGTGGTCAGGAGAGTAAGCCTTACTGACACCGCCA
chr1:40378807-40378822
TTTTTGGAATCTAAGAATTTGAGCTTTGAG40378807ACCTTGAACCCCGAAGAAGTAGACCATGAAACTCATACAACAGCAA
chr1:40903205-40903217
CATTATGGCCTGTGACATCACCACCCTGAC40903205ACCTGAA-CCC-TGGAATAAGTCTGTGAAAGGAAGAACTCTTGTA
chr1:40993101-40993116
AAAGGAAATCTCGTAGACGCTCACACCTAC40993101ACCTAGAACCCTGTGGGGCTTATGAGAGTTGTTGTTTTTCTGTCCA
chr1:42082185-42082198
GTCCTTTGCACAGGGCACACCATTCACATG42082185ACCTG-ACACCGAGGACCCCAGTGCATTACTCCTGTTCTGTGCCT
chr1:42900237-42900251
AGACAAAGGCAGGCAGGACACAGTGCTGGG42900237ACCTGAGCCCCTGGGGTCTCATTTTTACTCATTAATAGTAACACC
chr1:42993676-42993690
GAAGCTGGAGGACAATTTTGAATTTATTTT42993676ACTTGAACCCCAGGGCAGGCAAGGTGTAAATCTCAGCAGTTTCCA
chr1:43054500-43054512
TGGAGCTGGCAGGACTGAGCATGGCTCTGG43054500A--TGAACCCCGAGGGAGGGATGAGTGAATGTGGGGGCTGAGACT
chr1:43098256-43098271
GCTTTTATGTACCAAGCCACTAGTCAACTC43098256ACCTGAACCGCAGAGGCATCTTGTTTGTTGTAATGATAGAGCAGCC
chr1:43724021-43724033
TAATCCCAGCTGCTACCTTCTTTATTTCCC43724021ACCTGAA-CCC-AGGACTTTAACAGTGTCAGAGAGATTCCTCCCC
chr1:44051679-44051692
ACCTATGTATAAATAACTAAAAGCACCCAT44051679ACCTGAAGCCC-TGGCTCCAAGACCACCTGGAGAGTCCAATGGGG
chr1:45054992-45055006
TGTGGAAACCTCTCTCCCTATGCCCTCTCT45054992CCCTTAACCCCGGGGCTACATAGTGTTGCTCCAGGCCTGGGTCAG
chr1:45468791-45468805
AGGTTTGCGTTCCCCCTTGCACCCACAAAT45468791AACTGAATCCCGTGGGATGGGATACCCAAAGGTTTGGAATAAAAG
chr1:45733306-45733321
GTCAGTTGTCTATACCTGGAAACACTTTCT45733306ACCTGAGACCCCCAGGAGAAACACCAGGCTGACACTCAAGTAGGTG
chr1:46391319-46391333
GCCCCATAGGAAGACCAGCAGACTCAACTA46391319ACCTGAACCCCTGAGAGCTCTCAGACACTGAGCCACCAACCAGGA
chr1:47243671-47243685
AGCCCCCATGGTCTTGAACCTCTACAGCTT47243671AACTGAACCCCGAGATTCTGTGAATCAGCTTTGATTCTCCATCAG
chr1:47711519-47711533
GATCTCTCACTAATAAAAACATGTCACCAA47711519ACCTGCACCCCAGGGATGGCATATAATATTTTACAAAGAATACAA
chr1:48413824-48413838
ATACCACAAGAAAACAAATAAAATCAGCTA48413824ACCTGAACCCGTAGGAGTCCATAGAGACTGAACTATAAAACAGGG
chr1:48431806-48431820
ACCCTAGAGGAAGACTAGCAGTTTCAACTA48431806ACCTGAACCCTGCAGATCTCTCAGACAGTAAGCCACCAACCAGGC
chr1:48949193-48949207
ACCCTGCAGGAAGACCAGGAGTATCATTTA48949193ACCTGGACCCCGGAGGTCTGTCAAACACTAGACCACCAACCAGAC
chr1:48980142-48980156
CAGATGCAGAAAGACCATCAGTCTCAACTA48980142ACCTGGACCCCTGGGATATCTTAGCCACTGAGCCACCAACTAGGC
chr1:50665408-50665422
ACGCCAGAGGAAAACCAACACAGTCAACTA50665408ACCTGAACCCTCAGGGCTTTCAGAGTCTGAACCATCAAGCAAAGA
chr1:50851600-50851614
GGCGTGGTTGTGGCTTGAGTGCATAAAAAC50851600TCTTGAACCCCGGGGCTCAGGGAAGTTGAAGAGAGAAGCTGCCAG
chr1:51030048-51030062
CTTGGACATTAAAAGTCTCTCAGCTCACAT51030048TCCTGAACCCCCAGGAGATTTGTTTCTTGTGTAAGTTTGCTGAGT
chr1:51170714-51170730
GGGAAGGAACCTTAGAATGTGCAGAAAGAA51170714ACCTGAGAACCCCGCGGGATTTCATGTATATGCTGTTTATAGGATGT
chr1:51185420-51185434
TTTCATGATGGAGAAGTCAAGACAGCAGGA51185420ACCTGAAGCCCTTGGTATTTACTCAGTCAGGAAACAGGGGCAGAG
chr1:51375197-51375209
CCTCTTCAGCAGCAGTCCTCAGCCTGTGGG51375197ACCTG-ACCCC-CGGCTAGCCTCTATCTCCAAACGTAGTTACATT
chr1:51517903-51517916
CAGTCCCGCGATCACGTGGAACTCAGATGT51517903TCC-GAACCCCGTGGTTAGAGCAAGTATGCAGTTGAGAAGGAACG
chr1:51664770-51664783
GTGTGTGTGTGTATCAAGGCTGTTTTCACC51664770ACCT-AACACCGAGGGCTGGATCTAGAACTCCTGTTCCCTTGTGG
chr1:51901026-51901039
AATCAGCCCTGACTGGAGATACTGCTGAAC51901026ACCTGAACCAC-AGGACCATTGTGGCCACTTTCAAAAGCCACACC
chr1:52357479-52357493
CCCTTATGCCTTGTTCAGGGTTCGGAATAC52357479ACCTGGACCCCTTGGCCTAACTCCATTTGAATTAATGTATGGGGC
chr1:52643442-52643456
AACACCCAGGATTTGCCTGTATCCACAATC52643442ACCTTAACCCTGAGGTTATAGGCATGCACCACCACGTGCACCAGG
chr1:52805059-52805073
GTAGCGGAATCTTAGGCCAGAGTCAAATGC52805059ACCTCAAACCCGGGGAAATTTCCAAGCACTGGCCTGAGGCCAAGG
chr1:52992436-52992448
TGGCGCCAGCCCCGCAGGTGATCTCCTGTC52992436ACCTG--CCCCGGGGCCCTCCCCTGAAGGCTGCGCTGCTCCAGTG
chr1:53103608-53103622
TTGGTGTGTCAATCTCATGTCCCATGAGGG53103608ACATGAACCCCTTGGTGTTCTTACTTAGCATGAAGACCAAAAACC
chr1:53335889-53335904
CTACACTCTCTAGCAAGACAAAACTTTCCC53335889ACCTTGAACCCCAAGGGTCTGAGCTCCAACTACTGCCGAGCCAGCC
chr1:53830887-53830900
AGAGCTGCCTGCCATACTGGCCACAAACAC53830887ACC-GAACCCCATGGTCCTACAGGAGACATGAGAGAGAGAAAGGG
chr1:54178533-54178548
TAGTAAAGTAGGCATTGCATGGTGGAGCAC54178533ACCTGCAACCCCAGGGCTCCGGTGCAGAGGCTGAAGAAGCCATAGT
chr1:54875158-54875172
AAAAGAAATGTTGAAACCACAGATCAGTTA54875158AACTGAACCCTGAGGCAAGACTGATTTTCCTGACCGATGATTGCT
chr1:55073589-55073602
TTCCAGACTGTTCCAAAGATACCTGCACTT55073589CCCT-AACCCCGGGGGGTACAAAAGAACCCCGGGCAGCAAGCCTA
chr1:55080092-55080106
AGCTGTAATACTTCTTGTGTTTGCAACCTG55080092ACCTAAGCCCCGTGGAACCTATTCATCCAGGTTCCACATTGCCCT
chr1:55587999-55588013
GAGAGACCTGGTATACAAGATGGCACTCTC55587999ACCTGAGTCCCGGGGTCAGAGCCCCCTCTGGAGGCTGACTCTCCT
chr1:56092476-56092490
ACCTATAGGTTGGAACAACAATATGAACTA56092476ACCTGTACCCCCCGGAGCTCGTGTCTCTAGCTGCATATGTATCAG
chr1:56393476-56393490
CAATGGGATGGAATGAAGGATGGTCTGGTA56393476ACATAAACCCCGAGGTACAATGTTCTCAAGCTTCCAATTCTGCAT
chr1:57846222-57846237
GTCCTTGCTTAAAGTATGCTCTCCTTTTTC57846222ACCTGTAACCCTGTGGCAGAGGGGCCCGAAACACTCCTGCTGGGTT
chr1:57944057-57944071
TGTGATGTCTCTGCCTCACGTCCCCCTTTT57944057ACTTGAACCTCGTGGGGGAAGATGAGTTCCACATGAGCCTTACCA
chr1:57979736-57979750
TGTCGGGTATACGGTCCCCTGGCGTGGCTA57979736AACTGAAGCCCGAGGAGATTTAATGATCTAAGGTCATGACACAAG
chr1:58342743-58342757
GACATTTTCTTGCTGGGTTGGCAAGTGCAG58342743ACCTGAAGCCCGAGGAGATTCTGGGGTCTGTGTACATCCCACACT
chr1:58384248-58384262
TATGCTCCTGCCACAGACAGGCCCAGTGAC58384248CCCTGAACCCCGTCGACTGCAGGAAAGAAAGCATATATGATTCTT
chr1:58432178-58432193
CTACCACCGCGGTGTTAGCCGGTGCCCCCG58432178AGCTGCAACCCCGCGGCCTTCGGCAGGGGGGAGTGCGAACTGGCGC
chr1:58685523-58685537
CCCTTATGCCTTGTTCAGGGTTCGGAATAC58685523ACCTGGACCCCTTGGCCTAACTCCATTTAAATTAATGTATGGGGC
chr1:58690349-58690363
TCATATATGACACTGTTAAAGTGGCCAAGA58690349ACCTGAAACCAGGGGGAAAACCGCCTCCTGTTATTCTACTAAAAG
chr1:58717234-58717248
GACAGTGTTACCATGCACACACCCAAAGGC58717234ACCTGGAACCCC-AGGAATGCAATGTCTTTCAGTTTTTACAGAGAT
chr1:58722388-58722401
ACCCCATAGGAAGAACAACAATATCAACCA58722388ACCAG-ACCCCGAGGAGCTCCCAGGGACTAAACCACCAACCAAAG
chr1:58786089-58786101
ACTTAGCCCCTCTGAGGCGGAAGCTGAGCC58786089A-CTGAA-CCCGAGGAAAAGGAAGGTAGAGCAGCCTTTGCTCTAC
chr1:58915298-58915312
GATAGTGTTACCACACACACACCCGGAGGC58915298ACCTGGAACCCC-AGGAATGCAATGTCTTTCAGTTTTTACAGAGAT
chr1:58917841-58917855
GCACTACCCACAGATCCAATCCCAACACTC58917841ACCTGACCCCCAGGGGCCCATTAAACTCAGCAGTGCCAACTGATC
chr1:58927215-58927228
ACCCCATAGGAAGAACAACAATATCAACCA58927215ACCAG-ACCCCGAGGAGCTCCCAGGGACTAAACCACCAACCAAAC
chr1:59325574-59325588
GCCACTAACTCAACAGAATTACTTCATCAT59325574GCCTGAACTCCGGGGTGTGGGAAGCTGCTCTAGAACCAGGAACCA
chr1:60760744-60760758
ACCCCATAGGAAGACCAACAGTGTCAACTA60760744ACCTGGACCCCAGGGAGCTCTCAGAGACCAAGCCACCAACCAAAG
chr1:60906154-60906167
CCATGAGAAGCCTGAGGGATCTGAACCGTG60906154ACCTGGACCCC-AGGCTTTCTATGAAGCAAAGATAGACCCTTTTG
chr1:61061792-61061805
GATTTAACCAATCTGATTAGTACTGAGGAG61061792ACCT-AACCACGTGGTTCCTACAACATTTGGGTACAGGGGAGACA
chr1:61353806-61353820
CTCGAAAAGAACCCTTTTAAGTGACTTGGA61353806ACCTGAACCCCATGCAATGAAGATGTTGACCTATCTTGCTATTTA
chr1:62053373-62053387
ACCCAACCAAAAAGCCAACAAACTCAACTA62053373ACCTGGACCCCTGGGGGCTCCCAGAGACTGAATAACAAATCAAAG
chr1:62699891-62699904
ATGTTTCCCAGGGGATCACTGTGTTTGAAC62699891ACCTGATCCCC-AGGTGGTAGTATTGTTGTATTGTTGTAGACCCT
chr1:62888465-62888477
GCTGTACTAAAGAGTGAAGCCTGGGAAGTC62888465ACCTG-ACCCC-TGGTAGAAGGTGCTGCAGAGCTGGATGGGAGAG
chr1:63125105-63125118
CTGGTGTTCTGAGGTTGAGGTGACTTGCAG63125105A-CTGAACCCTGTGGTGGTGCTGGAGGTTTTAAAGAAGTAGACAG
chr1:63131522-63131535
TCAGGCTGCAGAGCTGCTTCTTAAAGTCTT63131522TCCTGAACCCC-AGGCTTAGCTCTGTGATCAGTATCTGCACATAT
chr1:63161597-63161612
AAATCACAGTAACCCAACTTAACTTGACTA63161597ACACTGAACCCAGAGGGAAGTACCACTGTGCCCAAGAACAGGATTG
chr1:63246104-63246119
ATTGTGTATAGAAGACTGTCTAAATGAAGA63246104ACCTGAAACCCTGTGGGATTGGAGAGCAGTCTTCTGAAAGCTACTC
chr1:63262658-63262672
CCACAGTAAGGAGCTGCAGGGGGACCTGAC63262658ACCTGACCACCGTGGGCACCTGCATTCTTGTCTTTGTAGGCACAC
chr1:63522597-63522611
GGAGAAGCGAGTCTGTGGGATCAGAGTAGC63522597ACACGAACCCCGTGGTAGCATTCTCCTGTGTATAGGACAGGACTT
chr1:64305819-64305833
TATATTAGAAATTAGAATATTTGAAACCAG64305819ACCTGAGCCCCAGGGCAAGTGTTTTATGGTCTCTGAACTAGTGCA
chr1:64438825-64438839
ACTCCACAAGAAAACCCATAGAGTCAACTA64438825ACCTGGACCCCTGGGAGCTCTCAGAGACTGAGCCATCCACCAATG
chr1:64476616-64476631
ACAGGATCACAGAATCAAAGGATCACAGAG64476616ACGCTGAACTCCGAGGAGTTCTGACACAACAGGATCACAGGAAGGA
chr1:64821245-64821258
GGGCTACGTGCTTTGGTTGGAGTCATCTTA64821245ACCTAAACCCC-AGGACAGCCCCTAACTCCCACTATGCCCATAGA
chr1:65337349-65337363
ACTCCACAGAAAGACCAATAGAGTCAACTG65337349ACCTGGACCCCTGGGGGCTCCCAGAGACTGAACCACCAACTCAAG
chr1:65655940-65655954
AGGGGAAATATGATCAGGGCAGGAATCAGG65655940A-CTGAAACCCCGAGGGCCAGCAGAAAAATGGAAACAGGTAACCTT
chr1:65912058-65912072
AGGTTTGCGATCTCCTTCGCACCCACGAAT65912058AACTGAATCCCGAGGGACGGGATAAGTGGCGCCCAATGTGAGGGT
chr1:65916693-65916707
AGGTTTGCGGTCTCCCTCGCACCCAGGAAT65916693AACTGAATCCCGTGGGACGGGATACCAATGATTGGCTATGAGCAT
chr1:66124902-66124917
TGTTGACCTGAGCTCAACTTAAGTTTGATT66124902CCCTGAACCCACGTGGCGGAAAGAGAAAACCAACTCCTGTAAATGG
chr1:66732775-66732788
AGGAACAGGTAGGAGAGCTGAGTCAGAGTC66732775ACCTG-ACCCCACGGTGTCTCTTGTTCCCAGACAGTTGGACTTTC
chr1:66794026-66794038
AGTAAAGATGCTCCCCCCACCCCTGTCCCA66794026ACCT-AACCCC-TGGCGTTTTGCAAGATTTGTCTTTGTCTTTGAA
chr1:67041341-67041354
AAACACGGGGGAGTCTTCGTGTACAAACAA67041341ACCTG-ACTCCGAGGTGGTCTCGGAATGTGAAGGACACTTGCTCT
chr1:67333619-67333633
AGGTGAAGAACCTCCACTCAAGTCTTGCCA67333619ACCTGATCCCCACGGATGTCTCATGAGACTTTATCTCAGCATTCC
chr1:67437393-67437407
TGTTTTGAGGAAGTCTGCTTTTAGCTGTCA67437393ACATGAACCCCGTTGAAAGTGAAAGACAGGGAGCTGCTGGGTGCT
chr1:67987096-67987110
CTATAGTGTATATAAATCATGTAACAGCCA67987096TCCTGAACCCTGTGGGACTTAACCAGTCTCTTTTACTGCAAACCA
chr1:68770365-68770378
ATCTGACAGAAAGACCAACAGAGTCAAGTA68770365TCCTGAACCCC-TGGAAGCTCTCAGAGACTGAGACATCAACTGAA
chr1:69146344-69146358
GCCCGGCTCCCCGGCCGCGCTCCGCCGCAG69146344CCCTGCACCCCGGGGAAGGCCAGCCAGGCTCAGCTCAGGAACCTC
chr1:69270099-69270113
CTTCTGCTACAGCATCAATACTGAAGCTTC69270099ACCTGAACTCCTCGGATATCCTGTTGTTGCCATGAAGATCCTGCA
chr1:69812743-69812756
TTTAAAAGCTTCATTCCTTTATCTATAAGT69812743ACCTG-ACTCCGTGGAAGTAGGAGGAACGCACCCAACACAGTGCA
chr1:70096117-70096131
ACCCTACAAGAAGACCAACAGAGTCAACTA70096117ACCTGGACCCCTGGGAGCTCTCAGAGGCTGATCCACCAAACAGAA
chr1:71596339-71596353
ACGTGGGGTCGACACGCCCTGCCCACTGCT71596339TCCTGAACCGCGGGGTCCGGCCTGCCTGCCTACGCACGTGGCCTG
chr1:71808883-71808897
TTTATCAATTGGAACAGGGTCTCTCATTGA71808883ACCTGAACCTCGATGGCTGGCTCCATTGAAGATCAGCAAGCTATT
chr1:72025426-72025440
TGTGGTAAGGGTTTGGCAAGTTGGTGTAAC72025426AACTGAACCCTGAGGTCAGAGTAGAAAGGGAGTTTATTTAGAATA
chr1:72069439-72069452
TGGACTAAATAGACAAGAAAATAACTCGGC72069439ACCTGAACCT-GAGGTCTATATAACACCCTGGACAGCCCAGCTGC
chr1:72884511-72884523
GAGGAGTTTGGGGCTTGGTTCCTGGGTCTG72884511A-CTGAA-CCCGAGGACAGGACTCCTCTCTCACGCTGATGCAAAG
chr1:73981256-73981270
CCTGGGGGCTCTGCAGGCTGCCTCTCCCGA73981256GCCTGAACCCCTGGGAGGAAGGGCAGGGTATGGAAAGCAATGAGT
chr1:74166790-74166804
TCATCCCGTCCATATGTAAGGAAAGCAAGC74166790AGCTGAACCCAGAGGATCACAGGGAATCCCATCACTTCCGAGTCT
chr1:74193865-74193879
AACAAGGTCCAGAGAGAGACGGTGCCTTTA74193865CCCTGACCCCCGAGGGCAGGACCGAGATTAGAACTCTTTTTTTTT
chr1:74281610-74281623
GACCAGTGCCGGTGGAAGTCACAAAAAGAT74281610ACCTGATCCCC-TGGAACTGGAGTTACAGACAGTGTGAGCTACCA
chr1:74321152-74321166
TGACTGAAGTAACCCCAAGTCACTGGATCC74321152ACCTGTACCCCCAGGAAGAGATAACTGCTCTCACCATCAGGGAGG
chr1:74453774-74453788
CAGGCATACATCACTGCTGGAAGATTTTTA74453774ACCTGAATCCTGAGGATAGAGCAGGCACTCTACCAATGGAGGGTT
chr1:74567978-74567991
CTGGTGAAGAACCTGCAAGAGGGCCAGGTC74567978ACC-GATCCCCGGGGGATTCCCCTGCCCCCTCAGTGATCCTCGTT
chr1:74728577-74728591
TCTTTGGTTTTGACATCATGCTGGATGAGA74728577ACCTGAAACCCTGGGTCCTAGAAGTCAACATTTCTCCAAGGTAGG
chr1:74756868-74756881
CTTTATGTATACTAAAATGTGGGTGCTGAA74756868ACCTGAACCCC-AGTCTTCCTAAAGTGTAGTAAGTGCTCTCAACC
chr1:74939977-74939991
TGCACAGCGCTCCCGCTAGCCGCCGCTCTC74939977ACCTGAGCACCGCGGTGGCTGACACGTCGGCGGCAGTGGCGGACG
chr1:74960364-74960378
AAGTCTGGGATCTTTGCAGCTTTTTTCCAG74960364CCCTGAACTCCGCGGAGCAGACAACTCACTGGGAAGTAGCTGAGT
chr1:75123480-75123493
CTCTGTGCTCCCATCCCTTCCCCAGGACTC75123480ACCTCAACCCC-TGGCTGCTCCTGAGGAGGAAGAGGCACTCACAA
chr1:75338532-75338545
AACACAGAGGTGGATAAAATAAAACAGAGT75338532TCCT-AACCCCGGGGAGGTCAGACTATCTGGGACACAAGACTTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://crispr.dbcls.jp/detail/en/mm39/2/ACCTGAACCCCGNGG
lang : en | db : mm39 | k : 2 | strand : | nogap : | query_string : ACCTGAACCCCGNGG | format : html | download : | debug : 

0.007 | 0.007 | search_start;
3.142 | 3.135 | search_plus_done; http://172.18.8.138:28851/match?q=ACCTGAACCCCGNGG&k=2&no_gap=0&offset=0&limit=200
5.950 | 2.808 | search_minus_done; http://172.18.8.138:28851/match?q=CCNCGGGGTTCAGGT&k=2&no_gap=0&offset=0&limit=0
5.950 | 0.000 | cgi_end;

CRISPRdirect | DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use CRISPRdirect in your work, please cite:
Naito Y, Hino K, Bono H, Ui-Tei K. (2015)
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.
Bioinformatics, 31, 1120-1123. [Full Text]