— Rational design of CRISPR/Cas target.
2025-07-18 15:37:20, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
GTGCTTATGGAGCGACTACTCAGCCAGGGC4422678 CGAGGGCGCCTGCGG
TCCTAGTCTTGGAGCCTTCACTGTACATTC4791750 CGAGGGC-CCTGCA G
TGCGGCCCTCACTCCCCGAGGCTATCCAGG5153503 T GAGGC CGCCTGGGG
GTCAACACCCTGTGGCCCTTGGATTAAGGG7408676 A GAGGG-GCCTGAGG
CTGCCACCGCCATGACACCCACAGGCCAGC7468614 A GAGGGCGCCT-CGG
CTCACCAGTGATCCTAAGATCCTGGGTATG7761944 CT AGGGCA CCTGTGG
CTACTTGACTGATAGCCGCACACCTCTCCT8160153 CGAGGG-G-CTGTGG
GCCGCGCGCAGGGGGGCGGGGGCGGGGCGG9770695 CGAGGGCGCG C GCGG
GGGAAGGGCATCAGAGAGCATCCTTGTAGA10396177 G GAGGG-GCCTGTGG
AAGTGGTTACAACCATCTGTAACTTTAATT10421153 CC AGGG-GCCTGAGG
TCCACCCTGGCCAGGGGTTTCAGCCGGCTG11399713 CT AGGGC-CCTGAGG
TCAGAACTCTGTGGAAATTGGGGAGAGGAC11654604 A GAGGGC-CCTGTGG
GGAGGCTTGATGATCCAGGGTAGGGGAATG11827970 CT AGGGCG-CTGAGG
TTTTAAATTTCTCTACCAGGGAGGGTTTTG12527933 CC AGGGCA CCTGAGG
ACTGCTCCTTCATCATTGTTTTCCAATCAG13163792 CGAA GGA GCCTGTGG
TTCCTGTTCAGGTATATCTCTCATCTTCCA13420462 CGAGGGA GCT TGGGG
ACAAGGCCACATCTCCACATAGTCCTTCCC13683949 CGA-GG-GCCTGTGG
CCCAACTTTGCTCTGAGTTCATACACTCAT13879813 T GAGGGA GCCTGAGG
TTATGAGAAGAAAAGAGCTGAAGGGACCTG14576540 C-AGGGCGCCTGAGA
ACTGATCTTTCCCCCTTAAGCCAGGTGGCA15144278 G GAGGG-GCCTGGGG
CCATGTGCAGCAACAGTTTTCTAACTTGTT15395390 CA AGGGT GCCTGAGG
TTCACCAGTGATACTAGGGTCTCAGGCATG15590881 CT AGGGT GCCTGTGG
AGAACAATAGTATCAATTAACCAGACCCCT16216951 C-AGGGCT CCTGGGG
CACACACACACACACACACACACACACACA16244977 CGAGT GGCA GCCTGTGG
ACCCCAGTGGCTGCCTTTGAAGGTGGTGCC16367990 CGAGGGA G-CTGAGG
CACGCCCCCCCTCCCCTCCCCCAGGGCGGC16589282 CGAGGGCGG C-GCGG
CCCCTGGCGGCTTCTGGGACCCCCGCATCC16590036 CG-GGGCG-CTGCGG
TTCTCTCTATGGGGGGTTGTGGCTAAGTGA16896132 C-AGGG-GCCTGGGG
CTCTCCAGTGATCCCAAGATCCAGTGTGTG17763796 CT AGGGCGCCTA TGG
GGCCAACCCTTGGCTACTGCCCCATATATT18168341 T GAGGGC-CCTGAGG
AATTAAGCTGCATGTTTCCATTGTAAAAAA18774546 CC AGGGCA CCTGAGG
AAGTTTATTTTTCTAGCATGCCCAGTAACC19179375 CGAGGA GCGCA TGAGG
CTTTTCAGTTATCCTTAGATCCTGGGTGTG19593103 CA AGGGT GCCTGTGG
GCTTCATGGTTAAGTGTATGACATATTACA19845339 CGAGGGC-CCTGAGA
TCTTCCAGGGCCCGTGGGCGTGGGCGCGGG20983023 CGC GGGCG-CTGTGG
ATCCGCTTGCCCAGGCACATCCCAGCGTGG21326318 CGAGGGA T CCTGGGG
ACAAGTTTATTCTAGGATCATACAGAAGGC21355507 CGAGGGCT CCT-TGG
AATCCCATGTTCCCAGCTGAGCACCATGCT21531204 CC AGGGA GCCTGCGG
TCTCATAAATAAAGACCCTGAAACAGTCCT21762106 C-AGGGC-CCTGGGG
ATGGCATCACCACGGGCACCGCGAGGGGGG22031834 CGC T GGCGCCTGCGG
GGACTAAACCACCAACCAAAGAGTACACAT22702607 G GAGGG-GCCTGTGG
GGGCGGACGGCGCTGGCGAGGCCGGGCGGG23961308 CGAGGGCA CCTGAC G
AGCGGGCCCAGGACCCGGCTCCGACTGAGG24139027 CC AGGGCGCCA GAGG
CTCACCATTGATCCCAAGATCCTGGGTTTG24192766 CT AGGGCGCCTGCA G
CAGAATGCTTAGGAATAACTTTGGTGGGAG24308281 CA AGGGT GCCTGTGG
CTAAGCATCCTCTCAGGACTGATGACCTTT24855137 CC AGGGA GCCTGAGG
CTCACCAGTGATCCCAAGATCCTAGCTGAG24866720 CT AGGGCGCCTGTGA
CTTCTTAGTGGTCCCAAGATCCTGGGTGTG24899366 CT AGGGCA CCTGTGG
TCCGCGGAGTCCAGGAGCCAAGAAGGCTCC26631444 CGAC GGCGCCTGTGA
CTCACCAGTGATCCTATGGTCCTGGGCATG27371816 CT AGGGCA CCTGGGG
ACCCCTGCCGCATGGGTCAGGCATGCTCAC28142758 CC AGGGC-CCTGTGG
TAAGGTGTTTGAGAAGCTGAACCGGATTGG30808905 CGAGGGCA CCTA CGG
TATCACAGGACAAGTAGAAGGAGGTGAAGA30833890 CGAGGGCG GCCTGTGG
AAAAGGTATGCATTGTGTCATCTCTTAGAC30943112 CGAGA G-GCCTGGGG
GACGTGCGCACAGGCGGCAGCCAATCACGG30988907 CGC GGGA CGCCTGCGG
GAGACTCACAACTGGACAAAGTACAGACAG31757418 CGAGGG-GCCTGGGA
CTCACCAGTGATCCCAAGATCCTGGGTGTG32260492 CT AGGGCGCCTGCA G
GTTCCATACGTGTGATTCAAGGACCGTGGC33583057 CC A-GGCGCCTGAGG
GCGGGGCTGAGCCCGAGAGCTGCGCGCGGG33947081 CT G GGGCGCCTGCGG
CCTCAACAGATGTGACAGACATCGGGTAAG34057512 CGAC GGGC-CCTGTGG
GCGGAGCTTATAATTCCATACACACGTGAG34153162 C-AGGGCGCCTGCA G
CTCCACCAGCTTCACGGCAGCCGAAGCACC34498672 CGA-GGCGCCA GTGG
GTGTCTCCCCTCTGGGGTTTGCTAAAGGCA34558292 C-AGGG-GCCTGAGG
TAGGGAATGCGAAAAACCCTGTCACCGCGA34619088 CGAGGG-GT CTGGGG
GCAATCGAAGCTATTCCGCAGACAGCCACA34681723 CGAGGGCG-CTGTA G
ATTAACTACATACAGGTTCTTAGAGAGATG34795206 CGAGGGCT CG TGAGG
CTCGCCAGCAGCTTCGGGCTCTGGGTGATG34969266 CGAGGGA GCG CTGAGG
CTCCTCAGTGATCCTAAGATCCTGGATGTG35109379 CT AGA GCGCCTGCGG
TTTGCGGGCGGGTGCGGGCGCGCGCGGCTG36107513 CG-GGGCG-CTGTGG
TCGGGCAGCTGCTGGAGCTGGCAGCGCGGC36551857 CG-GGGCGT CTGCGG
TAAAATGGGTTTCTATCCATCCCTGCTTCA36602773 CGAGGGCT CCTC AGG
CTATCAGCAGGTCATAAATGTGGTGAGCCC36616523 CGAGGA A GCCTGGGG
CTCTGATCTCTGTGTGAGGAGGGTGGGGTC36801112 CGC AGGG-GCCTGAGG
GAGGGCTTTCTGTCATTAGGAGCACACCCT36919893 CGAA GGA GCCTGTGG
ACCAATGGTAGGTAGAGTAATTAGCATTTG36928550 T GAGGGC-CCTGAGG
GCCCAAGAGTCAGGAGGCAAGTCTGGACTG37184012 CA AGGGC-CCTGTGG
GCAAAAGTGTGTTGGAGGTCCTTGTGGTGC37377679 T GAGGG-GCCTGGGG
CAGGCCAACCACCGGGAAGGAGCGCAGCAC37579854 CGAGGG-G-CTGCGG
CAATCTACATGTGAGTGAAGAGACAAAGTT37695691 C-AGGGC-CCTGGGG
GGGAGACAGTGGGTCTGTGAGACACCGAAC38037336 CGAGGG-GCC-GGGG
GTCAAACAGTGAGCAGGGCTGTGATCCCAG38241859 C-AGGGT GCCTGGGG
TTAATGCAGCTGACTGGGCTAATAGCCACC38283760 CGAGGGC-CG TGAGG
GAGAAGAAGGCAGGTTGTGGGGAGAGGGGA38392058 CGAA GGA GCCTGAGG
TTTCTGGTCCTCCGCAAATTAAGGGGAACC38667036 CGC AGGGCG-CTGCGG
ACAGAACCGTGTTTACTGCGGGTCCCATGC38668629 CGAGC GA GCCTGAGG
CACACATGCCTCAAGCTGTCTGTTGGGAGA38794874 C-AGGGA GCCTGTGG
CTCCCAGCCGCTGGCGCTCTGCTCGGGCCT38937025 CGC GGG-GCCTGTGG
CCTGACTTCTGAATGGGGACTCTAAAAGCC38961433 A GAGGG-GCCTGAGG
GGACTATGTTCAAGAAGTTACGAAAGCCGG39034431 CGA-GG-GCCTGTGG
GAAACGCTGAACCAGGAGCAAGATGCCTCT39216631 T GA-GGCGCCTGTGG
AATCAGGATGCACATCCCTGGGGGCTGGCC39433593 A GAGGGC-CCTGAGG
GCGCCACCAGCGCCACCCAGGGCGCGTTGC39616055 CGAGGGCGCCG GGC G
GAAGCCCCTGCCAGCACGGACCACACCTCA39637000 CGAT GG-GCCTGAGG
CTCCGGGCCGCTCGTGCAGGCGCGCGCGCG39940150 CG-GGGCGCC-GGGG
CTCACCAGTGATCCTAAGGTCCTGGGCGTG40376756 CT AGGGT GCCTGCGG
CTTCTTACCCTCTGCCTCCAAGGACCATCC40836095 CGAGGG-G-CTGAGG
CCCTACAGCTGCTATAGACCAGAGATTCCT41476917 C-AGGGC-CCTGTGG
TTGTTCCAGTCAGTTATCCTGAGATAGGAA41513708 A GAGGGC-CCTGTGG
TTTAGTGTTGAGGGGCCTGACACAAGAGTG42230595 G GAGGGT GCCTGAGG
CTCCTTGGGTACTTTCTCTAACTCTTTCAT42498316 CGG GGGC-CCTGTGG
CCTGGCTTTATGCAGTGCTGTGGACTGAAC42953655 CGAGGGC-CCT-TGG
TGTCTGAAAGAATTACAGGGATGGAAATGG43027530 A GAGGG-GCCTGAGG
AGTTCACGGCCTATACCCAGTTTGTCCACT43178958 A GAGGGCGCCTGAT G
CATACTTAGTGACTCAAGAAGAGAGACAAG43242298 CC AGGGA GCCTGAGG
GGTGACCAGCGCAGCGGCTCCGTCATTGGG43937397 CGAGGA -GCCTGAGG
GTGGAAGAGCTGAGAACGGGTGGGGATCCT44074268 C-AGGC CGCCTGGGG
TCTGCCGGCTTTTAGCTCGGCCACGCCCCT44141700 CGC GGGCGCCTGGA G
GATGCTCACAGTCAGCTATTGGATGGATCA44527183 C-AGGGCC CCTGAGG
TGCGAGGGGTGGGGCACAAGGCGGGAGGCG46128119 CGAGGG-GCCTGAGG
CCTGAGGCGGGAGGCGCGAGGCGGGAGGCG46128156 CGAGGG-GCCTGAGG
CGGGAGGCGGGAGGCGCGAGGCGGGAGGCG46128289 CGAGGG-GCCTGAGG
CTGGGGTGAAGGACCCTTCCAAATCGGTGG46891863 CG-GGGCGT CCTGCGG
TGGAGGTCTTGAGTTTCAGCTCTGTTGCTA47342842 C-AGGGC-CCTGTGG
CTTTATCTGCTGGTTCAGCAAATAAAGTGA49919382 G GAGGGCA CCTGCGG
TCCTTGACCTCTCTAGATTCAGAAGGCTGT50692788 CC AGGGA GCCTGAGG
TGTTTAAGAAAAAAAAAAAAAGCAGACATT51188462 CGAGGT C-CCTGTGG
TTGCTTGAGACCATCCCTAAACCAGGGAGG51410687 C-AGGGCGCCTGTGC
GGAGAGGCAGCCTTTGGAATGGATGTCACC52327867 CGAT GGT GCCTGTGG
CCAAAAGGCAATCAATTTCATGCTACCAAG52343051 CC AGGGT GCCTGTGG
AGGAACAAGGAGTCGGCGAGGAGTCACCCC52353412 T GAGGG-GCCTGCGG
GCCCTGTCCCCGGGGTGCGGGGCGGCCGCT52766244 CG-GGGCGCC-GGGG
AACACTTCTTCAAAAGGAAGCCCTGAGGAG53680992 C-AGGGA GCCTGGGG
TTGGAGCTTATACAAGAAAAAGGGGGAGAA55146911 T GAGGGCC CCTGAGG
CACGTTTAGATAGGTTCTCAAAGCAAAGCC55218281 T GAGGGC-CCTGTGG
CGAGAACGTGTCCTGAAAAGGGCGAGCCGT55402158 CGAGGGCGCC-GCC G
GAGGCTGACTCTCCTACGATCCTGGGTGTG55588059 CT AGGGCA CCTGTGG
AAGTAGGAGTAGATGTGGTTAACTTGTGGG57276583 CGAGGG-G-CTGAGG
CGTGATCGGCGGCGTGTGTGCAAGCCCGAG57813931 CGAG GGGCGCCG GCGG
AGGGTCTGGGCAGAAAAGCCCCCCGGAGCC57814618 CGC GGGCGCC-GCGG
CATGAAAATGGAAGGAAAAATAAATAAATG58184941 T GAGGGCA CCTGTGG
AAGGGGGACGGGCTACCCTGGTACAAGAGT58432111 C-AGGGCA GCCTGGGG
GGCCGCCGCTCTGGAGGGCGGGCGAGGCCG58432524 CG-GGGCGCC-GGGG
GGAAGCTTGATGACTCAGGGTAGGGGAAAA58677350 CT AGGGCG-CTGAGG
AGGAACAAGGAACCGGCGAGGAGTCACCCC58681466 T GAGGG-GCCTGCGG
GGAGGCTCGATGACCCAGGGTAGGGGAAAA58747076 CT AGGGCG-CTGAGG
CAGAGAGGGGAAAGGGTGGGGCTTGGGGGT59165866 CGAGGGC-CCTGTGA
ATCCGGCAGTCTGATTTCCACTGACCCAAA59653492 CGAGA GCT GCCTGGGG
GTCCACGCGCGGTACCAGCCCCACGCGCGG59952694 C-AC GGCGCCTGGGG
GGCTGGCTCCGACCGCTTTCAGAGCCTGAG60219566 CGAGGGCA -CTGCGG
TGTGTTGTACACACATGTTCCATGGAGGTC60304322 A GAGGC CGCCTGTGG
CTGTATGTCTCAGAAGAGCTGAGAACAAAG60908371 T GAGGGC-CCTGGGG
AAGTGGCCTACTTCAATATCGCTGTATCTT61163206 A GAGGG-GCCTGAGG
TGTTAGAACATTGGTTCCCAAGAGTGGTCT62214261 C-AGGG-GCCTGGGG
AAAGCCTGTGAGCGGGAACTCTATTAGATG62356677 CGA-GGC-CCTGGGG
CCCCTGTTCTAGTGTTCACCTACTGTGTAG62628949 A GAGGGC-CCTGAGG
GGCTGGCCAAAAGACAGCTGTCTTGGAGCA62721775 C-A-GGCGCCTGTGG
GGACTCGGGCGGCCTCACGGCGCGCAGCCC63312769 CG-GGGCGG CTGCGG
TGGCCGGTGCCCTTTGCGTTGCCTTCCCCG63485609 CG-GGGC-CCTGGGG
GATGGAGAAACATGGGGTCAATTCTGAAGA64452107 C-AGGGC-CCTGTGG
GCAGAGTAATTATGGGAGACCCTCCATTAA65014728 CT AGGGCGCCT-TGG
GTGGGTCGCGGAGCACCGCCGGAGGGATGG65226079 CGAGGGC-CC-GGGG
GGGGGAGGAGGAATGTGATAAGGAACTATG66006423 A GAGGG-GCCTGAGG
TGCTAGCTGGCCATGTTCTAGGAATGAAAT66450837 C-AGGGC-CCTGGGG
ACGTCCTCCTACAGCAGCCACTGGGGAGGA66731732 A GAGGG-GCCTGAGG
CCCGCAAAAGTCACCCCGCCGGCCGTGCTG66857015 CG-GGGCG-CTGCGG
CCCAACCCAGGCCTGCTCTGCAGTTTCTCT67065464 CT AGGGC-CCTGAGG
TAGAGGAATGTAGGTGTGGGCAGGAAGGGA67230141 G GAGGT GCGCCTGAGG
AGTGCCTAGATCTGTTGAAATCTGGATTTG67276645 CT AGGGC-CCTGGGG
TACTCAGACAGAGTGCATTTGTTTGGAGTT67437192 CC AGGGCGCCTGTGA
TTTACTGTGAGTTCAAAATGATGTTTCCCT69768621 CC AGGGC-CCTGAGG
ACTGACGGGGCCTGCGTAGGGGCTTCCTGT69866345 CG-GGGCGT CTGTGG
TCCAGGAATCTGACACCTTCTTCTGGATTC71725947 CGAGGGCA CCTGCGC
AGCTTGAAGCTTCCTACTCACCCAAAGGAC72146055 CA AGGGC-CCTGGGG
GTCCTCCACGTTTCAGAATGTTTGCTGCTA72338347 CT AGGGA GCCTGTGG
TGCTCTGGTCAGAGGTGTCTTCTTGTTGCT72380986 G GAGGGCGCT TGGGG
GCCGTCGTTGCTCTTGCTGCTGCTCTTGGG72863810 CGC GGGCGG CTGCGG
AGGATAGGGGAGTCTAAAAATAGTTCCCAG72990629 A GAGGGCT CCTGAGG
TGCAGCATTCAGCTCCCAGCAACTCCTGGT73044222 CC AGGGC-CCTGAGG
TGAGACCCAGCTGCAGAGGCACTCTCTGGG73893949 CA AGGGC-CCTGGGG
GGAAGAGCCGCAACTTCCTATTTGGCCACT73941677 G GAGGGCGCCTT GGG
GGAGCCCCGACGTCCTCGGGCACTCCCCGA74430562 CT -GGGCGCCTGGGG
GGAGAAAAAGAAGGCGCCGCCCGCGGGGGA74894355 CGA-GGCG-CTGGGG
TCTGTCTCATTTCATATAAAGATCTAAGTA74918091 C-AGGG-GCCTGGGG
CATGGCCGGGTAGCCCGGGAGAGCAGCGGG74990401 CGAGGGCGCCTGGT G
AACCCAGCCCCCTTCAAAACACTCGGGAAC75062616 A GAGGG-GCCTGTGG
TGGTGCTCCCTGGGATACCAGCTTCCCTGC75189494 CC AGGGCGCCTT TGG
TCCTCTTCCTCTCCAACCAGCCTAGTGAGA75351655 CT AGGGCG-CTGGGG
CGAGAGCGAGGTGGTCAGGGGCAGCTGGGA75362341 CA AGGG-GCCTGCGG
CAAGGCTCGCTCGCTGGAGCAGCCGAAGTC75364955 CGAGGGCGG -TGCGG
GGGCCCCTGGCCAGTTGTAGGGGAGAGCTT75377058 C-AGGGC-CCTGGGG
AGGTGGAAGGGCCTGGGGAACAGAGCCTTT75383866 CG-GGGC-CCTGAGG
AGTTCAAACGCAGCCGCGAATCGCCACTGT75399603 CGC GGG-GCCTGAGG
TTTGCAGCGCAGCGGCAGCAGCGAGGACTC75399994 CGG GGGCGCCTC GGG
CTAGCCCATTCGGGCGTTGCTCTTGGCGGT75416974 A GAGGG-GCCTGAGG
TGACCGGTGTCACGGCCCAGCTCTGGTGGC75451969 CC AGGGC-CCTGAGG
AGAGGCTTGTATGTGCGAAGAGGGTCTCCT75522829 CC AGGGCT CCTGAGG
TACTATGCTTTGTGGGCTGTGTGGCTCCTT75794385 CGAT GG-GCCTGGGG
GACTCCTGGAGCCTGTGTTACCAGCATGCA75908453 CGAGGGT GG CTGTGG
ATTTCTCAAAACAGTAAATGCAAGAAGTAA77239221 G GAGGGC-CCTGAGG
GAGTCTTAGTTGACAGAAGAGTCACAGTAT77411294 C-AGGGCT CCTGTGG
AGCAGATTTGTCCCTGCCGTGCCCCTGTAG78177403 CGAGGGG GCCTT GGG
TCTAGTTCTTGTATGACAATATAGAGAGCA78718920 C-AGGGCT CCTGAGG
CAAAGGCTGAAACATGGGCAGACTGGGGAG78798277 CC AGGGCA GCCTGGGG
CAGACTGGGGAGCCAGGGCAGCCTGGGGAG78798295 CC AGGGCA GCCTGGGG
GGCCTGGCAGGATTTATGGAGGCTTGAGGA78842336 CG-GGGT GCCTGTGG
CTTCAGGCCACCGGGTTAAAGTATATTCCA79845542 C-AGGGCGT CTGTGG
CTTAAGTAGAACAAAGTCATGTTGGATTTT79868481 CT -GGGCGCCTGTGG
AAGAAAAATAATACCAACTAACCAGACTCC80795768 CGAGA GCT CCTGGGG
TGGAAATAGTAAGCACTTATGAGAAGGGAC82634367 T GAGGGA GCCTGAGG
CTCTGTCCCAGAGTATGTGGGGGTGATGGT82912669 CGAGGGCT CT TGGGG
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/2/CGAGGGCGCCTGNGGen |
db : mm39 |
k : 2 |
strand : CGAGGGCGCCTGNGG |
format : html |
download :
0.007 | 0.007 | search_start;
0.082 | 0.076 | search_plus_done; http://172.18.8.138:28851/match?q=CGAGGGCGCCTGNGG&k=2&no_gap=0&offset=0&limit=200
0.117 | 0.034 | search_minus_done; http://172.18.8.138:28851/match?q=CCNCAGGCGCCCTCG&k=2&no_gap=0&offset=0&limit=0
0.117 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.