— Rational design of CRISPR/Cas target.
2025-06-15 16:37:27, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
CTCTCTCATGACACTAGGTGGCAGGAGTGA3051927 A CCACAATG-GACAT
GTACAAAAACTAACTCCAAATAGGTCAAAG3147974 A CTACAATGTGAA AT
TGCACCATGTGTGTGCAGTGCTTGAGGAGG3285764 CCAAA AATG-GACAT
AAGCTTGAGCCTAGGAAACCTCAAAGCCCA3356572 CCTACAC A GTGACAT
TTTTATCAAACGTACATATTTAGTTGAGTG3466806 T CTACAATGTGA-AT
TGTCAGTTCAGGAAAATGTATATTACTCTT3503651 CCCAA AATG-GACAT
CCCACAAGGAAAACAGGAAGAAAAAGCTTA3593478 CA CACAATG-GACAT
ATCTGGTTAGGATGAGATTTCTTTGCGGAA3656781 CCAACAT TGTGACAT
TAAAAAAAAAAACTTACTTTTTATAGAAAT3811354 CCTACAATGC TGAT AT
TTTCCACATTTTCCACAAGCAAGTTCATCA3860674 CCCA-AG TGTGACAT
ATTTGAGATGTGACCCTATTCTACATGTAT3903203 T CTACAATGTGT CAT
ATTTGGAGCATTCATTTCATTTTAGCATGT3912941 CCGACAAA GTGACAC
AGTTTGTCACCTTGTGTGCTAAAAGCAATC3987032 CT GACAA-GTGACAT
AAAAACCCACAGAATGAGAAATGACACTGC4003145 CCCA-AATGT-ACAT
ATTACAAGATTAGGATTTTAGTTGCTGCGC4004796 CCAACAAT-TG-CAT
TTCCTAGTGATATCCACTATTGTTACACTC4085198 CCGT CAA-GTGACAT
AATCTGAGACTCCTCAGAACTTGCTTGCTT4173814 CCAAG AA-GTGACAT
GATTAAGCAAAGGAGACCCCAAACCCTGCT4236575 CCCACAATG-G-CAT
AACTGTCCTGGTTGACTTTTGGCCAGTGCT4239847 CCTACAA-GTGACAC
TTGGTCCAGTGACACCTTCATATCCATACA4240520 CCCACAATGTGACAT
AGTGCTACAACACAGGAGGGCACGCTAGAG4240931 CCAACAATGTGAG C T
TGTTAGAGAAGAAAAATCCTAGTGACTTCA4287877 CCCA-AA-GTGACAT
ACATAGTTGGTTTTCAAAAACATCAAAATC4341616 CA CAG AATGTGACAT
TCAGCCATTGTTGGACCAGGAGCCAGCTCT4415853 CCGA-AATGTGA-AT
GCTGAAGGGATTTTCAGCCCTATAGGAGGA4499604 CCAACAATA TGA-AT
AAGCATTCAAACTAGGACATAGTTACATGA4530459 CCTACAA-G-GACAT
AAAGTGTGCAGTTCAGTGATTTCTGTTATA4585516 CCCACAT ATGT-ACAT
GGATCCCCCCAGAACTGGAGTTCTTGTGAG4637972 CCAAC-ATGT-ACAT
TTCATGGTGATGATAAACCAAATACTGGCC4648903 CCAACAC TGA GACAT
AAATAACATCATAAAATAAAAATGGTACCC4853415 A CTACAATGTGC CAT
TGGAAAAAACAATGGCTGATCTCTACTGTG5008988 CCTAC-ATGTGAG AT
GGCTGCTAAAAGGAGAGTCTCAAAGCCCAA5027210 CCC-CAAA GTGACAT
AACATTATGCAACTGAGCCACACCCCAGCT5104355 CCAACAT TT TGACAT
CCAACACAGTTCTTGCCTATGTACTTCCAG5124831 CCTAC-ATGTGACC T
ACTGGTAAGTTGCCCATACCCCCCCCCCCC5146639 CCAAC-ATGT-ACAT
TCTGTGTCAGTGACTGGCAGGCATGTTATA5164858 G CAACAATGTGAA AT
TGTGTTGAAAACTTACCAATATACAACATG5333144 G CTACG AATGTGACAT
CTCACTCACTCTGATCAGCCCTGGCATTCC5357422 CCTACAC TGG GACAT
GAAATTATGCTGAGGGAGAATAGCCCAGAA5482712 CCCACAATGTA A-AT
ACACATATACATTTGGTAGATGGGCTGAGT5512904 CCCA-AATGTGACAC
CACACTCCTGCTTCCTGGTTCTGGCATTCC5536229 CCCACAATGG GG CAT
CAAACTCTCCTGAGTGATTCAAGGTCAGGG5647518 CA GA-AATGTGACAT
AGATTTAAGATTAAGTACCAGGATTTGAGG5782839 CCAACAAT-TGAC-T
CCCTCTCCTGCGTCCCTGTCCTGGCATTCC5825410 CCTACAATGG GG CAT
TCTCACATACATGATACTTGGAGTTGTACC5957175 CCTACAATGT-AC-T
GGCTGTAAGAACTATGGAATTACAAATTTT5984131 CCTACT ATGTGACT T
GGGCTCCTGCATAGCTGTCTCTTCCTAGGA6362017 CCCACAATGT-A-AT
TTAGATCAGAGAATCAGATGTGAATTCTTT6470745 T CAACAAT-TGACAT
AAACACAAGAAGCACTTTTTGCACATTTTT6521379 CCTT CAATGTGACAT
GCAGAAGAAAGGGCAAATAAACACAACCGT6536989 CCTT CAATGTGAA AT
TGACATATTGCAGTACTCAGGCGAGGGAGT6567271 CCCACAT TGTGT CAT
TGGGTTTGGCTAATTCCTGGGAATCTTCTT6685581 CCCAC-ATGC TGACAT
AGAGTGATCACAAAGAAAAGGAAGGCACCA6776489 CCCACAATG-GAC-T
GACACCCAAGGTTGACTTCAGGCCTTCAAA6834775 CCCACAT ATGTG-CAT
GGGGAGATGGGTCCATGTGTAAAGTGCTTG6859346 CCTT CAATGTGA-AT
AACCTTGGTCTGAGAACTATGAAACTGTGG6975435 G CCACAATG-GACAT
CAGGACCCCACTTTATGATCACCAGCAGTG6997996 CA GAG AATGTGACAT
AGCACTCTTGGGCATATATCCAAAGTTTGC7063532 CCAACAATGTT -CAT
GAGGGGAGTTTACAGAAACCCTATTGTCTA7382880 CCC-CAA-GTGACAT
CGAACCCGGAAAACGGCACTGCTTATATAG7419698 CCCACAG TGTGACG T
TGAATCATCTGAGGAATTTGGTTATCTCAT7451745 CCAA-AATA TGACAT
GACTGCCATTACAACTAATGACATATGACT7515879 CCCACAATA TGAC-T
CTGTTCAGTTATAAAAAATAATTGAAAATT7735338 T CAA-AATGTGACAT
CCGAGAACTCAGAAGTGTTTCTAAACCTTT7766547 CCTACAA-G-GACAT
GCCATTCCTGTCTTCCTGCCCTGTTATTGC7872509 CCTACAC TGG GACAT
AAGGTCTTACCACAGGGAATGTCCAATAGT8067485 CCTACAATGTGC CAA
GGGCCAGAGCTCTAGGAGCATGAGGGAATG8092261 CCTAC--TGTGACAT
CTATTCTCTTTTGTGTGAGTGACCTCTTTT8100993 CCAG CAATGA GACAT
GACCAGATACAATTCAAGTGCTCTAAGCAA8147440 CA GACAATG-GACAT
AATCTCTCACCCATATCCCTGTTAGTAACA8274568 CCAACAATGC -ACAT
AATCCTTTTAGGACCAGTGCTCTAATGTCT8316097 CCAACAT TGTG-CAT
TCTTTATAGATTCTTCCACCCAATACACTT8419015 CCCACAAC TGTG-CAT
GCCAACTTCAGTTAATCAGTATAGTTCACA8574850 CCTACAATG-G-CAT
CCCACTCCTGCTTCTCTGTCCTGGCATTCC8637621 CCTACAC TGA GACAT
AGCTAAGTTAGATTTTAGGCAGTCCGTGAT8840319 CCGACAT TG-GACAT
AGGAGCAAGGGCCTCTCCTCCCATTGATGT8894581 CCAACAA-G-GACAT
ATTATCCCTAACACTCATTTTGGAGTCTAC8912364 CA CACAATGTGACAC
GGCACAGAGGGCAGCCATTATTCTGTTTCA8926212 CCCACAA-G-GACAT
CATCTTTTTTAATAAGTAGTGTGTGACATC9052764 T T CACAATGTGACAT
GCGGAGAGATCATTGTAGGAAGTTGTGAAG9095878 CCTA-AAT-TGACAT
AAGTAAGGTACATTCTTTTCTTCAAACTAG9219915 CCTA-AATGTA ACAT
TATACATATATAAAAAATTAATGAAATTAC9264163 CCTACAATGTGAG CAC
TTTACACCCCCATTCCCTTTATCACCACCA9378926 CCCACAAT-TGAA AT
CTCAATGTATGGATGTGTCAGAGAGAATAC9433092 CCCACAATGT-ACAA
AGTGTCTATACAACACAAAGCAATTCTTTT9433789 CCTA-AATG-GACAT
GGTCGACAAGGGACAGCCCCTGACCAGGGA9442283 CCC-CAAG GTGACAT
CTAAACAAATCAAACAAACAAATAAAAATC9578493 CCAACAATGT-AG AT
CAAGCCTTGGAAACCATAGAAGCTATGCCC9636666 CCTACA AATGTGC CAT
CCTACCAGCAAAATTAGTCCTCAACTGAAA9700734 CCTACAAA GTG-CAT
ATATGGCTACATGCCAACAAAATTTCACAA9801774 G CAACAG ATGTGACAT
AAAATGTTTGGCAAGCCTATATATCAACCC9840858 CCTA-AATGTGAA AT
CTGCTGGCCACCACGCATAAGTTTGGACAA10119639 CCAAC CAATGTGT ACAT
ATGGAAATTAAGGAGACCAACATGTTGCAA10325761 CCCACAA-G-GACAT
TGGTTAGGACAAGGGTCTCATTGCTTACCC10372848 CCCAC-A-GTGACAT
TTATTTTTATGGCTTCTAAATTATTTATTA10502685 CCAA-AA-GTGACAT
GTTGAGCTCAACAATGCTATATAAGGTGAA10562911 CCAACAAG TGTGT CAT
ATTTGACTACTGAGGGTGACAGTCATGGGA10691509 CCTAC-ATGTGA-AT
TCTTAACTGAGTGCCTTAATTACATGCTCA10701721 CT TAA AATGTGACAT
TAACACCCATTATTAATATTTACTAATCAA10770251 CCTACT ATGTGACAA
TAGGAGGCTATCAACATTCATTTTGTTTTA10780412 CT TACAT TGTGACAT
GCAGCCTTCTTTGTGGAATTGCCATTGGAA10822388 CA TACAT TGTGACAT
TACCTTGTTTGTGTAATGTGAAAAGTCATA10948842 CCAC CAATGTGAC-T
ACATCTGAAGAATGTACTTACTGTACGGTT11056177 CCTACT ATGTGACAC
CCATTCAAACTTTTGATTTGTTTTCTATGT11060460 CCCACAAC GTC ACAT
AGCTTGAGCACTAGGAGCCTTCAAAGCTTA11162015 CCTACAC A GTGACAT
TCCCTATCTCCTAAAAGGAGCATGCTAGGT11280076 CCCACAAT-T-ACAT
AGCAGTAGTCATCTGTCTTTTGAACATGTG11497629 CCAACAAC TGTGA-AT
GGCAACTGGGGTGAGAGTCTTAAGCCCACA11622016 CCCAC-A-GTGACAT
ATGTCTTTTGGTTTTTAGGTGTACGGCCTT11624098 CCAAT AATGTG-CAT
CTGCCTTGACACGTGCTCAGATGCCTTCCA11635393 CCTC CAATGT-ACAT
ATGTGACATTTTTGTTAAATATAAATTATT11697777 CCTA-AATGTG-CAT
ATAATAAATGGAATTCTAATATCTGGAGCT11781332 CCTA-AATGTT ACAT
CAAAAATAGTGTCTGGAATGCATGTAAGTA11833241 CCGACAATG-G-CAT
CACACATGCGACATCCATACAAATAACATC11871132 A G CACAATGTGACAT
CTTTTAAGATCACCAAGGTCTTTTAAGATT11954387 CCAAC-AT-TGACAT
ACACATGAGTCTATGGGGTCCATACCTATT11972695 CCAACAAT-T-ACAT
ATGAGAGTGTTCCTAGTGTTTACATATATT12042009 CCCAG AATA TGACAT
GATCTCTGGGTCTCAGAGGAAGCTTGCCTG12167028 CCAACAATGC TGACAC
TGCCTATAGTGCAAGTTAGGACTGGATCAA12210066 CCAACAT ATGTGAG AT
GTGGAATTCATGTGCCTCTTTCAGGCTTGT12353405 G CCACAA-GTGACAT
CTGATGCCTTTTCCTGCCTTCTGTAGGCCC12482238 CA CACAC ATGTGACAT
GTCTATTAACTTCCAGCAAGTGGTAGCAGG12507266 CCAAA AATGTGA-AT
GGCTGGACCCAGATTCAGCCTTTTTCTTCC12563964 CCCAG AATGTGAC-T
GATGTCAGGAAAGTAAAAGCCTCCCAGGAC12631597 CCCACAG TGA TGACAT
CTGGAACCTCAGCTCAGATAGCTGTGCCTT12683833 CCTAC-ATGTGACAA
TGAGAGACTTATTTGTGGTGACTTCTACAT12765259 CCCT CAG TGTGACAT
GGCCAGTCCTTGAGAACTCTGTCTTTATGG12847809 CCAACAG TGTGACT T
TTTTTGAAATAGACTTGCATTATCCTGGGG12964236 CCCACAG ATGTGAC-T
GTACTCTTAACCTCTGAGCCATCTCTCTAG13084636 CCCACAAA GTGA-AT
AAAAAAAAAATCCTGTCTCAAAAAACAAAA13184987 G CAACAAG GTGACAT
CTTTAAAAAGACAGACGTCATCAACTAGGG13266744 CCCACT C TGTGACAT
CTGTAGAGGACCCAGGCTGGGTTCTCAGCA13304509 CCCACAAA GTGAC-T
TTGATAGTGTTGGCCAAAGTACTTATAGCT13311889 CA TACAATGTG-CAT
CCCTGAGAATGACTATCAAAAGACCAGAGG13322523 CCAA-AATGTGAC CAT
TGTATGCAAAGCGATGGAGAGCAGTACAGG13362963 CCCACAATGG G-CAT
ACATGTTTTGGGACCTGACAAACCACAGCT13374776 CCG--AATGTGACAT
AACCCGAATGCAAGGTAAAGGGAGTCAGCA13412933 G CAACAATGTGAG AT
AGAAACACCTCTGAACTGACCACAAGAAAC13452909 CCCACAG TGTGACAA
GGCCCAATACAAGTAGGTGGGGATCTTTAA13478170 CCG-CAAT-TGACAT
CAAACCCACCCCCACAGTGACACACTTCCT13554526 CCAACAAG GTC ACAT
ACCACTCCTGCTTCCTGGCCCTGGCATTCC14013227 CCTACAC TGG GACAT
ATCTCGCCCCCTCTTGTTAGATGCCACTTT14182229 CCAACAC TGTGG CAT
ATCCCCAGGTTTTCCTGACAATCAGTTCAT14296455 CCTAC-ATGTGAC-T
AATGGGCGATGGGACTTTCCTACCCAGAAG14303262 CCAACAATA TGACC T
GAGGTAAAAGGTTAGTGTATAACTTCAAAG14329322 CCTAC-ATGTA ACAT
CTTAGTCTTAAATTCTTCTTTGTAGAAATA14388162 CCTACAATGT TGT CAT
TAAGGTTGTTTTAATTTGAAAATCTACAAG14485336 CA AACAAG GTGACAT
CTTTACTTCCTCCTCCCTGCCCTCCATTCC14509665 CCTACAC TGG GACAT
GAAAGTCTAAGAATCTAGAAGTTGTTCAGT14596125 CCAA-AATGTGAT CAT
AAGCAGAGCACTCTGAGAGAGTCTTGGCAA14702648 CCTACAATC T-ACAT
TACTCATACCCTCACACCTTCTCTCTCTTT14728202 CCT-CAATGTA GACAT
TCACAGCAAAAGAAAATTGACTGTGACATA14763949 CA TACAT ATGTGACAT
GAGGCATTGGCTGAAGCACTGGTGTCTGTG14840055 A CTACAAA GTGACAT
AACACTACAGCTCATAATGTGCTTGCAGGT14917852 CCCA-AAT-TGACAT
AGCTGAGAGCAGGGAAGAAGAGAGATAACG14925908 CCCACAAG GTG-CAT
TAACATGTCAACCTGCATACTTCAGTGTTC14942124 CCCACAATGTGAG G CAT
TATCAACACACATACACATAAACACACATA14949958 CCTAC-ATG-GACAT
GATTGGCAGACATTTTGTGCTTCTGAGTGG15036866 CCAACAT T-TGACAT
GATACGTTGGGGTTCCCAAGGTAGTAGGGT15039282 CCGACAATG-GACC T
ACCCACTGCCACCTCCCTGCCCTCAGTTCC15443179 CCTACAC TGTGG CAT
GTGGTAGTGTATCTCTTATACCCACATTTC15452353 CCAACAAT-T-ACAT
ATATTTGCAAGAGCAGAAAGATAGCCATAT15490674 CCCA-AATGTGA-AT
ACACACACACACACACATACACACGCACAC15666224 CCCACAATGTGG G CAT
AATCTGTGGCTCAATTTCCAGTAACACATA15719436 CCCACAAT-TG-CAT
CTGCTGCCAGGGAGGCTGCAGTGGATTATG15781138 CCC-CAAT-TGACAT
CAAACAAACAAAAACCATTGGCATTCTTCA16076855 CCAACAA-G-GACAT
AAGATCACACAAATGGAGTTTTGCTGCTTG16186627 CCTAA AATGTGA-AT
CCAGGACCACTTCCCTAGAGAATGGTGCGG16322861 CCCACAATGG G-CAT
TTGTGCTGCATTTCTGACCTCCAAGCCTTG16330751 CCTACAC A GTGACAT
GAATCGTTGTTCATAGTTGGCAAAGAGCCC16447026 CCCACAATGTT ACAG
TTTATACACAAATTCCTAAATCCCACGTTA16464068 CCCACAA-GTGACC T
AATTGATCTCTAAATTTGAAGCCAGCCTGG16536430 CCTACAAA GTG-CAT
GTCTAGAGACTGTTGTTCTGATTATTCTGG16650207 CCAACAATGTGG C-T
GGCAACTAGGGTGAGGATCTTATGCCCACA16701630 CCCAC-A-GTGACAT
AAGGTCTTACCACAGGGAATGTCCAATAGT16811996 CCTACAATGTGC CAA
GCAGCTAGGGTGAGGGTCTTAAAGTCCACA16830074 CCCAC-A-GTGACAT
TAATTGATGTATAGATGTAAATGTCTAGAG16976506 A G TACAATGTGACAT
GAAAGTCCCAGATGCCAGGGAAGCAAGAGC16996063 CCCACAG TGA TGACAT
AAATACAACTGTGCACATTTTAGAAAAATA17065434 CCCACAATT TGAG CAT
GCACGCAGCTTTTGTGCCATCTTCCTCTGC17233525 CCAT CAATGTGT CAT
AGACAGTTGTCCTTTATTGATCTTCGTTGA17312890 CCAACC ATGTGA-AT
AGGGGCTGGCATCTGAATCTTCTTATGAAA17482007 A CTA-AATGTGACAT
CCCAGTAAGTATGTCTCAAAGATCCCATAA17552645 CCTACC ATGTGA-AT
CTGTCTCCACGTGGATGCCCCCATCCCCCA17566576 CCC-C-ATGTGACAT
ATTTCTATTACTGTCTTTATGATTATTTCC17641203 CCAACAATGT-ACAG
GAAGTAGAATTCTGCTCAACTGGCTTGGCT17735383 CCAACAATGTGT A AT
CTCTTGTAGGAAAGATGAAGGTAAGCATGC17826185 CCTACAATGC TGACT T
TCATAGCCTGCCCCCAGTGGCACATCTGCT17917061 CCAACAAG GTC ACAT
GTATTTTACCCATTACGCTCCTTTTATCCT17954052 CCTACT AATT TGACAT
AAAGGCTGAGAAAAAGTGACTATGCTTAGC18120629 CCCA-AATGG GACAT
GTTGCTAGGAGTTTGTTCAATACTGCTTTT18231400 CCAAA AATGTG-CAT
AAGTATAAAGAAGAGGCATCCAAGTTCACT18251015 CCAT CAATGTGA-AT
GGAGGAGTGTTCCCATTGCTCCACTTCTCT18397698 CCAAC-ATGTG-CAT
GTTTCAGTGTGTCTCTTTTTAGTTTCTGTT18470098 CCCACAATC TGT CAT
AAGTTTCAGCATTGTGGTTGCCCAAACAGA18562097 CCTACAC A GTGACAT
CCCAAGACCACCAGTGTAGGGATGGCACCA18626692 CCAACAATGTG--AT
CTAGAAACCAAAACTTGGGGAATGGTGCCA18649204 CCCACAAT-TGAC-T
CAATGACACTTCAAGAAAACCAAACCTACT18820793 CCAACAAA GTC ACAT
AAACAATTCTGGGATTCCATGATACCAATT18862493 CT TACAATGTGA-AT
TCCATGAGGGTCACTTCCTCCTGTATGCAA18907123 CCCAC-ATGTC ACAT
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/2/CCNACAATGTGACATen |
db : mm39 |
k : 2 |
strand : CCNACAATGTGACAT |
format : html |
download :
0.007 | 0.007 | search_start;
0.086 | 0.080 | search_plus_done; http://172.18.8.138:28851/match?q=CCNACAATGTGACAT&k=2&no_gap=0&offset=0&limit=200
0.124 | 0.037 | search_minus_done; http://172.18.8.138:28851/match?q=ATGTCACATTGTNGG&k=2&no_gap=0&offset=0&limit=0
0.124 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.