GGGenome | Results

CRISPRdirect

— Rational design of CRISPR/Cas target.

2025-07-18 07:08:16, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

chr1:3076086-3076096

AGGCAAGCCACCACAATCCAATCCAGCTGT3076086GGCACCTGTGGACCACAACAAAGACTAGCTTGACACAATAA

chr1:3091029-3091039

CCTGCCCTCCTCAGAGTCCGGAACCAAGGT3091029GGCTCCTGCGGAGCCTGAGGCAGAAACCTCTTGGGCCGGGT

chr1:3091038-3091048

CTCAGAGTCCGGAACCAAGGTGGCTCCTGC3091038GGAGCCTGAGGCAGAAACCTCTTGGGCCGGGTGGACCCCTG

chr1:3115169-3115180

CAGAAATTGCTGGTTGTTTGTGAGCCTAGA3115169GGCTGCCTGGGGCTGAGAAAAGAGAAAAACAAACCTGGGTAT

chr1:3124429-3124439

GACATCTGTGTCCTCACATTGGGTGAAGAT3124429GTCGCCTGGGGCACCCCTGATTATTATATGCCTCAATTAAC

chr1:3325277-3325286

TGTTTATTAGTGTCACCCCCAGGATGAATT3325277GGC-CCTGGGGGACATTTTATAAAACACAAATCATCAGGAA

chr1:3601901-3601911

ACCCGGCTGGCGCATGCCTGTCTCGGAGCG3601901GGCGTCTGCGGGCGCGCGGAGGGGGTGGGGGGCAGCGGGAG

chr1:3616500-3616510

ATTTCCAGCTGATCTTAGAAGGCTGTTAAA3616500GGGGCCTGGGGCACAATTCCCCAAGTTCCATCCCTCACTGA

chr1:3708093-3708103

GTGCTAAGAATTCTGGGTTCATTGTCTGGA3708093GGCTCCTGAGGTCAGAAGGGGGAAGAGAAGGAAAGAAACGT

chr1:3724229-3724239

ATCACCCCCCCCCCTCCCTATTCCTTTCCT3724229GGCACCTGAGGCCGTAAAAAGCTGAATTATAGTCTCCTCTT

chr1:3842297-3842307

CGGAGTCCCGGAGCCAAGGAGGCTACTGCC3842297GGGGCCTGAGGCACAAACCTCTCGGGCCGGGCGGACCCCTG

chr1:4056800-4056810

TCAATGTTCCGAGGGGTTTGGGGTTCCCTC4056800GGCGGCTGGGGTTGAGGCTGTGGATAAGGGGGAGGTAGTGG

chr1:4286752-4286761

TATCTGGCATCAATGGGAGGGGAGGCCTTT4286752GGC-CCTGAGGAAGCTCAATACACCAGTATAGGGGAAATGG

chr1:4344874-4344883

AGAATAGTAAATGACCATTGACTTCAAAGT4344874GGC-CCTGTGGATATCCTAACAAGACAGTCTGTTCTTTGAA

chr1:4417289-4417299

ATGGGAATACACCCCATCTGTAAGGAAACA4417289GGCCCCTGTGGAGCGCTGACTCACAGTGCAGCTATTGCTAG

chr1:4422682-4422692

TTATGGAGCGACTACTCAGCCAGGGCCGAG4422682GGCGCCTGCGGGCCTTGTCCAGGTCAACTGGCAGCACCTTC

chr1:4470169-4470178

GAAGCTAGGGGGGTTTATAGAAAAGGGGCT4470169GG-GCCTGGGGGAGGAATTGGCATGGTTTCACATGATTGGT

chr1:4562234-4562244

GCTGGGTGCTGCTGCTGCGGTGGCGGCGGC4562234GGTGCCTGCGGTTGCAGCGGCTGCTGGGGTTGCGCGTGGAA

chr1:4571235-4571244

GGTTGTCTTAAAAGAAAAACTGGGGGGAGA4571235GG-GCCTGGGGAGATGAAAACACCTGGTCTCTCCAGAGTGT

chr1:4593234-4593244

GGACCGGACTGGACCTGGAGACAGATTGTA4593234GGCGGCTGTGGACGATTTACAACCACGACTTCAAGCCCAGC

chr1:4594842-4594851

AGCCAAGGGCTATGAACTAGAGCTAAGTTT4594842GGC-CCTGGGGACTTAACCCAACCATCCTCCTTTGACAACT

chr1:4629837-4629846

CTTAACAGTCTGCTCAGGCGGAAGCACAGA4629837GGCG-CTGAGGCAGCACCCTGTGTGGGCCGGGGACAGCCGG

chr1:4630049-4630058

GACAGCTTCTGGAACAGGCGGAAGCACAGA4630049GGCG-CTGAGGCAGCACCCTTTGTGGGCCGGGGACAGCCAG

chr1:4630473-4630482

GACAGCTTCTGGAACAGGCGGAAGCACAGA4630473GGCG-CTGAGGCAGCACCCTTTGTGGGCCGGGGACAGCCAG

chr1:4630897-4630906

GACAGCTTCTGGAACAGGCAGAAGCACAGA4630897GGCG-CTGAGGCAGCACCCTGCGTGGGCCGGGGACAGCCGG

chr1:4631109-4631118

GACAGCTTCTGGAACAGGCAGAAGCACAGA4631109GGCG-CTGAGGCAGCACCCTGTGTGGGCCGGGGACAGCCGG

chr1:4651408-4651418

TGTGTGTGTGTGTGTGTGTGTGTAGGTGTT4651408GGCGTCTGTGGAAGGCAGAAGCGCCTGACCACCTGGAGTTA

chr1:4674011-4674021

TTAGACAAGAGCTCCCAGAATTCATCCTGA4674011GGCACCTGGGGGAAAATGAGAAAAAGCAAACCAGAGGGCTG

chr1:4699289-4699298

GATGGACAAGGGGCAGCCCCTGAAACCAGG4699289GGC-CCTGGGGCGATACTCTGTGCCCCAGGGTTATGAGAGA

chr1:4775602-4775612

CTGAAAGAACTTCAGGAATGAAAATGGAGA4775602GGAGCCTGAGGAAAAGAAGGTCCAATGACAGGCCTGAAGTG

chr1:4803233-4803243

CATTTTCTCAATTAGTGATCAAGGGGGAAA4803233GGCACCTGTGGGTGGGAACATTCCTGGGCTGGTAGTCTTGG

chr1:4815788-4815797

AAAAGAAAGAGAAATAGACGCGAGGATAGA4815788GG-GCCTGAGGGCCCAGGAGTGCACCTCAGCAGAGTCCGAT

chr1:4816142-4816152

CACGTGTGAGCAGTAATTACTGTACTAGGT4816142GGCGCCTTTGGGGATAATAAATGACGTGTCCACATGCATTA

chr1:4857138-4857147

TCGGGGTGAGCTACTCAAAACCATGGATTT4857138GG-GCCTGGGGCCAGAGCCTGCTGGTCATTCAACATGGAAA

chr1:4869232-4869241

TGTGGGACCGGTTTTTGGTGGGTGAACATG4869232GGC-CCTGTGGACGATCCACTTTCATTGAAGAAGTCACATG

chr1:4878222-4878231

AGGCCACCGCCGCGGTGAGTGGCGGCGCCC4878222GG-GCCTGGGGCACCAGCGAGACCCAGGCCGCCGCGCGTGG

chr1:4904397-4904407

GCCAAGCTTTTGTGCTAGAGGTTTAGTGGT4904397GGAGCCTGTGGAAGATGAAAGAAGTGTCCTGGTTAGGTAAG

chr1:4944270-4944280

ACATTTATCTTGTTGAGTTATTGGCCAAAG4944270GGCTCCTGTGGAATCCCCCAAACATCCCAGGCCATTGCCAA

chr1:5011848-5011859

CAAACAGGCATGTGAGATCTCAGGAGGAGA5011848GGCAGCCTGTGGCTGCTCCTATAGGCAGGAGGTTGGAAGTAT

chr1:5044898-5044907

GTTTCTGTTTCTTGTAGCCTTTATAGAGCT5044898GGC-CCTGGGGAAAGTGGCTAGCTGGGGACAGATGTTGCCA

chr1:5055640-5055650

TGCTGGTGTGTATATAAGCAGTCCTCCCTG5055640GGTGCCTGGGGTCCCCATAGCAGCATCGAGGCATTCCTGCA

chr1:5117026-5117035

GCTGCCACTGAAGCCGGAAGTTCTCAGTTT5117026GGC-CCTGCGGCTGTGTGCAGCCAGGGACTCACGCTGAGTT

chr1:5124312-5124321

TGTTAGACATCAGTGGAAGGAAAGGCCCTT5124312GG-GCCTGAGGGTGTTTGATACTCCAGTGTAGGGGAATGAC

chr1:5153507-5153517

GCCCTCACTCCCCGAGGCTATCCAGGTGAG5153507GCCGCCTGGGGTCCCTCCCCGGCTCCGGAGAGCCGACTGGT

chr1:5166264-5166274

CATCTAGTTGGAGACCAGGTGCTCAACACA5166264GGAGCCTGTGGGGGACATTTCATATTCACACTACGCATATA

chr1:5240740-5240749

CACTTCTGGCTGAACAGAGGCTGGCTGTGC5240740GGC-CCTGCGGCCCCAGCGTGCTGGGCCCTGTGAGCAAGCT

chr1:5279618-5279628

TGTATTTATTACTTTGGTGGTAGGTTTCCT5279618GGGGCCTGTGGAAAGCATGGATTAAGAAAAATGAAAGGATA

chr1:5317070-5317080

GGAACAGGGACAAAGGACACCCGCACAACC5317070AGCGCCTGGGGTTCATTCTGGTCGGCGCCACCACAGTACCA

chr1:5421150-5421159

GACAGCTTCTGGAACAGGCGGAAGCACAGA5421150GGCG-CTGAGGCAGCACCCTGTGTGGGCCGGGGACAGCCGG

chr1:5421362-5421371

GACAGCTTCTGGAACAGGCAGAAGCACAGA5421362GGCG-CTGAGGCAGCACCCTGTGTGGGACGGGGACAGCCGG

chr1:5470320-5470330

CTGAAAGAACTACAGGAATGAAAATGGAGA5470320GGAGCCTGAGGAAAAGAAGGTCCAGCAACAGGCCCAAGGTG

chr1:5482782-5482791

CTTCTTGGTAGACTGAGGAAGTTGGCCGTT5482782GGC-CCTGAGGGCATTGAGAAAGCTGTGCAGGCAGGCAGCT

chr1:5554705-5554715

GGCATGGAGAGTACTCTAGGGCCCCTAGTG5554705GGCTCCTGTGGGTTCAGAAAAAAGATGGCAGGGGTGGCCCG

chr1:5832415-5832425

CTGAAAGAATTACAGGGATGAAAATGGAGA5832415GGAGCCTGAGGAAAAGAAGGTTCAGTGACAGGTCCAAATTG

chr1:5856601-5856611

TATGGGTCTTTGGCCAGATTTACAGTACCA5856601GGCTCCTGTGGAGCAGCTCTTAAATCCAATCAGAAAACAGT

chr1:5969791-5969800

TGTGTAAAACCATACCTCACTTCTCAGGGT5969791GG-GCCTGTGGTTAAATACCTTCTGCATGGAGAAATATCTG

chr1:5986371-5986380

GCCGGGCAAATCCCGGATCAGTCCTGGTTA5986371GG-GCCTGTGGTATCAGTCCTGGGTAGGGCCTGTGGTACTG

chr1:5986396-5986405

GGTTAGGGCCTGTGGTATCAGTCCTGGGTA5986396GG-GCCTGTGGTACTGAATGCCTGGAATGGGCCTCAGGATT

chr1:6026492-6026502

ATGCATCATGGGTTTTTCAGATTAGTCCAT6026492GGCTCCTGGGGCACTATGTGTCTTTCAGTTCCTGAGAAACT

chr1:6157177-6157187

TGGTGTGCCCTGCCCTACTTCTAACCTCAT6157177GGTGCCTGAGGTGGCTATCTCTTTTACATTATCATTTTTCT

chr1:6203302-6203312

TTGTCACTCCCTTCTCCCTGTTCCCTTTCT6203302GGCACCTGAGGCTATAAAAGCTGAATTATAGTCCCCTCTTT

chr1:6230405-6230415

TCCTGAGTCAAAGTTTGGTGGTGGCAAAGG6230405GGCTCCTGTGGACTTCTCCCCAAAACCAAGGCTGATGTTAG

chr1:6233679-6233688

CACAAGGGGAAAGGGGTCCCAGTTTTGATA6233679GGC-CCTGGGGGGGGGAGGAAAAGGGGGGAGTAGGATATTT

chr1:6244437-6244446

CACAAGGGGAAAGGGGTCCCAGTTTTGATA6244437GGC-CCTGGGGGGGGGAGGAAAAGGGGGGAGTAGGAGATTT

chr1:6267016-6267026

ACCTGTGGCTGTCATCTTCTTCCACCATGT6267016GGCTCCTGGGGACCAAATTCAGGCAACCAGACTTGGTGTCA

chr1:6422989-6422999

TTCTTTCATAGTTCAGGAAGATGCCCTGCA6422989GGCTCCTGGGGAGAAGGGATATCAATGGACTCTTCTGGCAA

chr1:6448090-6448100

CTGAAAGAATTACAAGGATGGAAATGGAGA6448090GGAGCCTGAGGAAAAGAAGGTCCAGCAATAGGCCCAAAGTA

chr1:6453201-6453211

CTTGCTCCGCCATGGTCCCCGCGTCCCCCT6453201GGCGCTTGAGGGGCCGAGCCATCCTAGACGGCGAGACCCAG

chr1:6473914-6473925

TGCTGCAAGCTTAAGCCCAGAAGTTTCACT6473914GGCTGCCTGAGGTCAGACTCAAGGCTTTGGAGACCTGGCTTT

chr1:6510000-6510010

CTGGGGAGACCTGATACTTGTACCAGGCCT6510000GGGGCCTGAGGTGAGGTCCTGGGAATCTCTGGGGAAGGAGA

chr1:6607794-6607803

CAATCCCCTACCCACCCACTCCCCCTTTTT6607794GGC-CCTGGGGTTCCCCTGTACTGGGGCATATAAAGTTTGC

chr1:6664696-6664706

AGATTTTGTGTCTCCTGTCACTGAGGCTGA6664696GGTGCCTGTGGTGTGGTTTTGCAAGGGTTCACTAGCCTCTG

chr1:6676010-6676020

TACTCAAAAAAAACAAAAAACCAGTTTGAT6676010GGGGCCTGGGGCAGTATACTCCTTGCAGGATGTCAATTGGC

chr1:6691460-6691469

ATATATTGTGGGGTTTCGGACTCAGGATAA6691460GGCG-CTGAGGTTCATATTTTACATACCAAAGCAGACCTGG

chr1:6844265-6844274

GTGACTCCTTAGAGAGACAAATAAACACAA6844265GGC-CCTGAGGTACATCATTGTCCTTATGTGATCTATTACT

chr1:6854463-6854473

CTTATGTTATAGGATTTAGTACCCTGTCAA6854463GGAGCCTGGGGGGATGGTACCAGCATGCTGACAGATTGGCT

chr1:7135395-7135404

GAGTCTGCTGCATGGTCCCATATATTTGTG7135395GGC-CCTGAGGCTGGGGGCCCCGCACACCATTTTTTGGCCT

chr1:7135435-7135445

CTGGGGGCCCCGCACACCATTTTTTGGCCT7135435AGCGCCTGTGGAGTGAGAAGTTAGGGGGTGACCATCTATAT

chr1:7214555-7214565

TCTGCATTTGAGTGTGTGTATAAGTACGCA7214555GGTGCCTGTGGGGCCAGAGGGGTCAGATCTCCTTGGAGCTT

chr1:7234746-7234756

CATGAGGAGTTCAAGATCAGGAGCATGTTT7234746GGTGCCTGTGGAGGATGGATCATCACCTGGACAGTGGACTA

chr1:7248005-7248015

CTGCCCTACAAAGTCGCGGACATCGGACTG7248005GCCGCCTGGGGACGGAAGGCTCTGGATATAGCTGAGAATGA

chr1:7248652-7248661

CTATGGTGATGTGGGCAAGGGCTGTGCCCA7248652GGC-CCTGAGGGGTTTTGGGGCCCGAGTCATCATCATCGAG

chr1:7287446-7287457

CAGAAATTGCTGGTTGTTTGTGAGCCTAGA7287446GGCTGCCTGGGGCTGAGAACAAAGAAAAACAAACCCGGGCAT

chr1:7309953-7309962

AAGTATGATGAGCTCTTTCAATAATGCCTT7309953GGC-CCTGTGGATTATAGGGCAATTCAGTAATATGTTTCGC

chr1:7371491-7371500

CAATTCTCTACCCAACCACTCCCCCTTTTT7371491GGC-CCTGGGGTTCCCCTGTACTGGGGCATATAAAGTTTGC

chr1:7394313-7394322

TACACAGAGGACCTACTGCAGACCTTGGAA7394313GGC-CCTGTGGTTGCTGCTTCTGTGAGTTTATATGAGCTTT

chr1:7408679-7408689

AACACCCTGTGGCCCTTGGATTAAGGGAGA7408679GGGGCCTGAGGGACAGAGGTTCCCACACAGGCAAGAGTAAG

chr1:7466061-7466071

AGGCAAACCTGCCTGAGTGGTACAGAGCAT7466061GGAGCCTGAGGCACCGGGTGTTGGGAACCGCCCACTGTGCT

chr1:7468618-7468627

CACCGCCATGACACCCACAGGCCAGCAGAG7468618GGCGCCT-CGGCTCCCCTCACAGATGGCGGTGAGCTGCCCA

chr1:7625330-7625339

TTTCCATGATCTGTTCATTGATGAGAGTGG7625330GGCG-CTGAGGTCTCCAACTATTATTGTATGGGGTGCAATG

chr1:7738243-7738252

GGTGGACAAAGGGCAGCCCCTGAAACCAGG7738243GGC-CCTGGGGTGACACCTTCAGCTCCAGAGTTATAGGCGA

chr1:7754250-7754261

TTCCTCACTTCCCAGGGTGTCCCACAGGGC7754250GGCAGCCTGTGGTCCTCCTACCACATCTGCTCACCACAGTTC

chr1:7761948-7761958

CCAGTGATCCTAAGATCCTGGGTATGCTAG7761948GGCACCTGTGGGGTGGAGAGTCCTCTGGAGACTGTGGGACT

chr1:7783153-7783163

CGGAGTCCCAGAGCCAAGGAGACTCTTGCC7783153GGGGCCTGAGGCACAACCCTCTCGGGCCGGGCGGACCCCTG

chr1:7783371-7783381

CGAAGTCCCGGAGCCAAGGAGGCTCCCGCC7783371GGGGCCTGAGGCACAAACCTCTCAGGCCGGGCGGAACCCTG

chr1:7812227-7812237

AGGAAGCCAGGAGGGGCTGGCGCGGGGGGG7812227GGGGCCTGCGGGCCTCGCCCCTCTTTCTTTTCTTGCCTGTC

chr1:7856667-7856676

CTGCATGACAATGACAGTGGAATTTGAACT7856667GGC-CCTGTGGTGTAAACTCAGGAGCTAATGTTATTGAGTA

chr1:8034803-8034812

CTCAGTGATACCAAGATCCTGGGTGTGCCA8034803GG-GCCTGTGGAGTTTGTGCCCAAGATGGCACAGGGCTGGA

chr1:8097684-8097694

TGCAAGTCATATGACTTAGCTGCAGTCCCT8097684GGCGCCTTTGGGACTGCCGCCACACCCGCTCCCCACAATTC

chr1:8100272-8100282

TGCAAGTCATATGACTTAGCTGCAGTCCCT8100272GGCGCCTTTGGGACTGCCGCCACACCCGCTCCCCACTCTTG

chr1:8100736-8100746

TGCAAGTCATATGACTTAGCTGCAGTCCCT8100736GGCGCCTTTGGGACTGCCGCCACACCCGCTCCTCACAATCA

chr1:8113781-8113790

GAGTGCAATGGGCTCTCTCAATGATGCCTT8113781GGC-CCTGTGGATTATAGGGCAATCCAGTAATATGTTCCAT

chr1:8134975-8134985

ATCACCCCCCTTCCTCCCTGTTCCCTTCTT8134975GGCACCTGAGGCTGTAAAAGCTGAATTATAGTCCCCTCTTC

chr1:8143277-8143287

ATCACCCCCCTTCCTCCCTGTTCCCTCCTT8143277GGCACCTGAGGCTGTAAAAGCTGAATTATAGTCCCCTCTTC

chr1:8152948-8152958

GTTTTAGCAGAAGTACTTTTGCAGAGCTGG8152948GGAGCCTGAGGCTGTAAACATCAGGGAAAAGGAAGCTATAG

chr1:8219221-8219230

ACAGGCTGCCAGGGATGCAGGCAGAGCTAT8219221GGC-CCTGGGGTATAGTATTTTAAATTTGAGAATTAAAAAT

chr1:8226268-8226278

TGGAAGGGCTGCCAGACACTTTCCACACTT8226268GGCGCCTGGTGGGCATCTCAGCCACTGACCCCACTCGGTGG

chr1:8226345-8226354

GGTGGACAAGGGGCAGCCCCAGAAACCAGG8226345GGC-CCTGGGGCAACAACCTTGGCACCAGGGTTATGGGAGA

chr1:8251211-8251221

TGCAAGTCATATGACTTAGCTGCAGTCCCT8251211GGCGCCTTTGGGACTGCCGCCACACCCGCTCCCCACAAAAG

chr1:8571587-8571596

CTAAGTGAGACCCTAACTACAAATAACATG8571587GGC-CCTGTGGTTGAAATATAGGTCAGAATAGTTCAGAATC

chr1:8626220-8626230

AAGCAAGAACTGCAGGGATGGAACCGAAGA8626220GGAGCCTGAGGAAAAGAAGGTTCAGTGATAGGACCAAAGTG

chr1:8658743-8658753

TTATCACCTCCTCCTCCCTATTCCCTTCCT8658743GGCACCTGAGGCTGTAAAAGCTGAATTATAGTCCCCTCTTC

chr1:8805154-8805163

ATCTTATTTAGTGATATTGGTGAAACCTAA8805154GG-GCCTGGGGATAAAGGATAGTAAAAAGAAGAATCCACAA

chr1:8964085-8964095

TCACCCCCCTTTCCTCCCTATTCCTTTCTT8964085GGCACCTGAGGCTGTAAAAGCTGAATTATAGTCCCCTCTTC

chr1:8977234-8977244

ACCAACAAGAAAGAAGACTCTGCTGGGGCT8977234GGCCCCTGAGGTATGGACCACTTCACTTAGAGAAGAAGCAT

chr1:9153551-9153561

CTTAGAAAGTAGAATAAAATAGTCATAGGA9153551GGCGTCTGGGGGGGGGGGAACTGGGTGGGAGAGGGAATGGG

chr1:9237385-9237395

CTGAAAGAATTACAGGGATGGAAATGGAGA9237385GGAGCCTGAGGAAAAGAAGATCTAGCAACAGGTCCAAAATG

chr1:9257533-9257542

TGTTGAACATCTGTGGGAGGAGAGGCCCTT9257533GG-GCCTGAGGTTGTTTGATGCCCAGTGTAGGGGAGTGCCA

chr1:9436822-9436831

TAAGGCTGCTATGAACATAGTGGAATGTGT9436822GGC-CCTGTGGCATGGTGGGGCATCTTTTGCATATATGCCC

chr1:9453742-9453752

ACATAATAGATTTCTCAGGTTAAAGTCCAT9453742GGCTCCTGGGGCACAATGTGTCTTCCAGTTCCTGAGGAACT

chr1:9478523-9478532

ATGAGTAAAACGGTATCCTGTTCTCAGGGT9478523GG-GCCTGAGGTTAAATACCTTTTGCAAGGAGTGTCTGGGT

chr1:9493356-9493366

GAAGCATGAGTATTTCAGGCCAGAGCCTGT9493356GGCTCCTGGGGCACTGTATGCCTTTCAGTTCCTAGGAAATC

chr1:9521073-9521083

GACCTTGACACATTCCTGATCATCATAAAG9521073GGAGCCTGAGGAAAGGCCTTTTGTGCTGGAGTGGACATCAA

chr1:9668512-9668522

TGCAAGTCATACGACTTAGCTGCAGTCCCT9668512GGCGCCTTTGGGACTGCCGCCACACCCGATCCTCACACTGG

chr1:9683488-9683497

CTAGTGGACATTAGGTGGGTGCGGTCCCCA9683488GGCG-CTGGGGGACTCTGAAGGATGACTAACTGTGCGTTTC

chr1:9718418-9718427

TGTTGGACATCAGTGGGAGGAGCTGCCCTT9718418GG-GCCTGAGGAGGTTCAATTCTCCAGTGTAGGGGAATGCC

chr1:9756757-9756766

CATGCTTGTTTAGTTGTCTATAATGAATGA9756757GGC-CCTGGGGTCAATCCTCAATTCCATTAAGAAGAGACAG

chr1:9770926-9770935

GTTTCTGCGCCCCGGGTGTGTGCCGGAAGA9770926GGCGCC-GGGGCCGATCCAGCCGCCGCCACCTCCGGAGGGG

chr1:9829738-9829747

CTTGGGTACTTTCTCTAGCTCCTCCATTGG9829738GGC-CCTGTGGTCCATCCAATAGCTGACTGTGAGCATCCAC

chr1:9835976-9835986

ATTTTTAATTACATGTATGGGACATGTGCA9835976GGTGCCTGAGGAGAGCAGGGGCACTGCATTGATCCTCCACC

chr1:9859400-9859410

TGTGTTGCTTGCATGTATGTGTACATGCTT9859400GGAGCCTGTGGAAACCAGAAGAGGGCCTTGTAAAACCTGGA

chr1:9860962-9860971

GCTGACACTCAGGGGTCTGTCTAACAGGCA9860962GGC-CCTGGGGAGATTTCCAGCATCACAATGTTTTTTTTAA

chr1:9868529-9868538

GCGTGCCGGGGTCCCGGCCGGGCTCTCTCG9868529GGCGCC-GGGGTCCCGCCGCGGCCCGGCGCGGTCTTTGTGT

chr1:9914392-9914402

TTGGGTTTGTTTTGTTTTGTTTCCTTTTTG9914392GGTGCCTGTGGTTGGGCTCAGGGCCTCAGGTTTGCTAAGAG

chr1:9926113-9926123

TTACCTTCTCAGTGTCTTTGTATTCACTGA9926113GGTGCCTGAGGTGCCGTATCTACAGAGTCCTCACTGTATCA

chr1:9948775-9948785

GAGAAAAGCTGAGTATGGCAGTGTAGCTGC9948775AGCGCCTGGGGTGGAGACTCTGGTCCTAGGGACTCACTGGC

chr1:9958565-9958575

TATTTCCTGGTGACTAAGCATTCAAGTATA9958565GGAGCCTGTGGGTGAGGGTGGGAGGTGGGGATTCTTATTCA

chr1:10002346-10002356

TACTGTGCAGCACACTTTAAAGAAAGCAGT10002346GGAGCCTGAGGGGCTGCTGTACTTAGCGTCTAAGCAGTTCA

chr1:10038463-10038473

CCCGCTCGCCCACAGGCTCAGGCTGACCCC10038463GGCGCCGGCGGGACTCAGTGCTGCAGCCCGTGGCGGACGCG

chr1:10058146-10058156

CAGGAATTGTCTTCTCAGAAGCAGCCCTCT10058146GGCTCCTGGGGCTTTTGCTTACTGTGCACCAGTCTCTATTA

chr1:10060421-10060431

AAGTTTCATGTGCATTAGCAATCACCAGGG10060421GGAGCCTGTGGGATGGCTCAGCAGGTAACTAAGTCAGTCAC

chr1:10086719-10086729

GGAACATAGAGTGGTGCTTAGTGTTTTCTA10086719GGCACCTGGGGCTGCTGTCTAATTTTTTTTTCATGTAATTC

chr1:10114212-10114223

AGGCTTGTTTTTAAAGTTAAGCACAAGGGA10114212GGCAGCCTGTGGGCAAACTCTTAAACCGATGCTAAGCCCAGG

chr1:10129562-10129571

GATTTTAGAGGTGCAGTCTGCGTCAGCTGT10129562GG-GCCTGTGGTAGGGACATTCTACCGAACAAAATAATATC

chr1:10183272-10183281

ACAAAGGTATGTCTTGGACAGAGGCATGTC10183272GG-GCCTGGGGTTCTGGCCTGGCAGGGTGGGAGTAGTTAGA

chr1:10262245-10262254

TCCATGGGTTAGCTGAACCATAAAAAACGT10262245GGC-CCTGAGGGCTGCCCAACTGAAGCTAAGAACAGCCCAG

chr1:10280021-10280030

AATTCTTTAAATATGGTATCCTTTTTCCTT10280021GG-GCCTGGGGATTATAGGCCATCAGAACATAAAGCATACT

chr1:10296057-10296067

CTGAAAGAATTATAGGGATGGAAATGGATA10296057GGAGCCTGAGGAAAATAAGGTTCAGAGACAGGCCCAAAGTG

chr1:10353454-10353464

ATACAGCAGGTCAGGACTCTGAGTTGTTCA10353454GGAGCCTGTGGCACCTCGATCACCATCCCACCTTTTCATTC

chr1:10369261-10369271

TCCTCAGTGCTGGATGACGAGTGCTTTCTA10369261GGCCCCTGGGGAATCACATTCAGATTCGGATGCTTTTCAGC

chr1:10396180-10396190

AAGGGCATCAGAGAGCATCCTTGTAGAGGA10396180GGGGCCTGTGGTGTGCATTGTGCAATGTCTAGGCTGCTTCA

chr1:10421156-10421166

TGGTTACAACCATCTGTAACTTTAATTCCA10421156GGGGCCTGAGGCCATCTTCTATTATCTGAAGGCACCAGGCA

chr1:10605136-10605146

GTCTTAGGATCCCGCAGGGAATCCTATGTG10605136GGCCCCTGAGGGTGTAGGGAGACTCCGCTGGCAAGGCACCC

chr1:10605534-10605544

GTCTTAGGATCCCGCAGGGAATCCTATGTG10605534GGCCCCTGCGGGTGTCGGGAGACTCTGCTGGCAAGGCACCC

chr1:10635129-10635140

GGCTGAGGATAGGAAGAAAGAAGAGAGAAG10635129GGCGCTCTGTGGTGTGTGCGGGTGCACATGTGCGTGTGAGCC

chr1:10756459-10756469

GTAACTCCATTCCTTTTTCTGGCCTTTGCA10756459GGCACCTGAGGTACTTTTCTATTGCCATGAAGAGATACTAT

chr1:10852246-10852256

CTTCTCCTGGAATTTCTAATTACAGAATCT10852246GGCTCCTGAGGCTTCTGGATGAGGGAGCGTTGTTGAAATGC

chr1:10870672-10870681

TTTGCAGAAACAAATACTGTGCTGTGTTGT10870672GGC-CCTGGGGCTAATTATGTTTGATGTTAATTCTGTTCTC

chr1:10875552-10875562

GGCGGGTGCCGGGCTGTGCCGCAATGGGTG10875552GGCGCCTGGGCCGGTAGCTGGGAGCCGGCGCCGCGGGCGCT

chr1:10875578-10875587

GGTGGGCGCCTGGGCCGGTAGCTGGGAGCC10875578GGCGCC-GCGGGCGCTTCGTCAAAAAAGATGGGCACTGCAA

chr1:10945417-10945427

CATGAAGAGACACCATTGTAGCCGCCTGTA10945417GCCGCCTGCGGCCACACTAACTGAATTCCTGAGTGGGAGCA

chr1:10958819-10958829

CGGAGTCCTGGAGCCAAGGAAGCTCCCGCC10958819GGAGCCTGAGGCACAAACCTCTCGGGCTGGCCGATTCCTGT

chr1:10993106-10993116

TGAAAGTCATATGACTTAGCTGCAGTCCCT10993106GGCGCCTTTGGGACTGCCGCCACACCCGCTCCCCACAATTC

chr1:10995828-10995838

TGAAAGTCATATGACTTAGCTGCAGTCCCT10995828GGCGCCTTTGGGACTGCCGCCACACCCGCTCCCCACAGATG

chr1:11241420-11241429

AGACCTGTCTCAAATATAAATTGATAAAAA11241420GG-GCCTGAGGGTTATAGATCAATGGTAGAACAGTTAGCTC

chr1:11355141-11355150

GCTGTTTCCAGCTTCTAGCTATCACAAATA11355141GGC-CCTGTGGCCTTTTTTGAAAACAGAAATTCCATGTAGA

chr1:11361470-11361480

GGCAGTTTGTGGAGATACAGGGAATATAGA11361470GGCTCCTGGGGCATAGGATCCCTCCTGACAGGAACCTGCAC

chr1:11375026-11375036

TTGTCACTCCCTTCTCCCTGTTCCCTTCCT11375026GGCACCTGAGGCTATAAAAGCTGAATTATAATCCCCTCTTC

chr1:11399717-11399726

CCCTGGCCAGGGGTTTCAGCCGGCTGCTAG11399717GGC-CCTGAGGAGAGAGAGCAACTTTCGGGAGAACAAGATC

chr1:11424077-11424087

AGATAGCATTGGGATCCAGTTGAGGAAGTG11424077GGCGCCTGTGTATGTGTGTCCCGGTATCCATAACTTTCCCA

chr1:11523136-11523146

GGAGAGGTACAGGTTGTGTTTCCTCTCTTG11523136GGCCCCTGAGGGCAGGATGCTTACAGACTGGGCTGAGAGAG

chr1:11598645-11598655

ATGAGGCTTCAGTCCCCTTCAGGTCTTGTA11598645GCCGCCTGTGGCCACACAAACTGGGATCCTGAGCGGGAGGC

chr1:11654608-11654617

AACTCTGTGGAAATTGGGGAGAGGACAGAG11654608GGC-CCTGTGGTTTTATGTTTCTAAACAATTCACATTTACA

chr1:11827974-11827983

GCTTGATGATCCAGGGTAGGGGAATGCTAG11827974GGCG-CTGAGGCTGGAATGGGTGGGCAGGTTGGGGAGCACC

chr1:11865315-11865325

AATTAAAGAAACCAAATATCTATCTAAGAA11865315GGAGCCTGGGGGACATGGGGAACAGGGACATACAATTAAAA

chr1:11910374-11910384

CTGAAAGAATTACAGGGATGGAAATGGAGA11910374GGAGCCTGAGGAAAAAAAGGTCCAGTGACAGGTCCAAAGTG

chr1:12031739-12031748

GAACAGAATAGGGGTCCCAGGGTGGCACTC12031739GGC-CCTGGGGATGAAGGGAAGAGAGGACAGGGGGAGAGAG

chr1:12109149-12109159

TGCAAGTCATATGACTTAGCTGCAGTCCCT12109149GGCGCCTTTGGGACTGCCGCCACACCCGCTCCCCACAATTC

chr1:12111725-12111735

TGCAAGTCATATGACTTAGCTGCAGTCCCT12111725GGCGCCTTTGGGACTGCCGCCACACCCGCTCCCCACACTCT

chr1:12144902-12144911

AGGAAGTAGGAGTGGGTGGGTTGGGGAGCA12144902GG-GCCTGGGGAGGGTATAGGGGGCTTTGGGGATAGCATTT

chr1:12227743-12227752

CAATCTACTACCCACCCACACCCCAGTTTT12227743GGC-CCTGGGGTTCCCCTGTACTGGGGCATATACAGTTTGC

chr1:12348319-12348328

GTAGAAAACATGTATAATCTAAGTATAAAA12348319GGC-CCTGGGGAACACAAAACACAAAGGCTTCTTTGGACAT

chr1:12357008-12357018

GGAATGGAGGGGGAAGTACACATGAATGCA12357008GGTGCCTGTGGCTGCCAAAAGAGAGAGTCCAAGCCCTGGAA

chr1:12382901-12382912

GCGGCTTACAAGGACTGGGTACACCAGGGA12382901GGCAGCCTGGGGCTGAAAGAGACTTAGATGGCGAGAAGTTAA

chr1:12389402-12389412

ATATTTGCCCTGCGTAAGACATGCTGGTAT12389402GACGCCTGTGGATTCACATTTACCTCTTCTCTTTCCTATTT

chr1:12520641-12520651

CATGTATATGTGTGTATCATGTGCATGCCT12520641GGTGCCTGTGGACATCAAACAGGATGTCACATCCACTGAAC

chr1:12527937-12527947

AAATTTCTCTACCAGGGAGGGTTTTGCCAG12527937GGCACCTGAGGGAGCCATCTTGGTTCCCGGACCCCTCAAAG

chr1:12534593-12534602

CTGGCCTAGTTGGGCATCAGTGGGAAGAGA12534593GGCGCCT-TGGTCTTGCAAACTTTATATGCCTCAGTACGGG

chr1:12587939-12587948

TCCTAAGAACTAGCCAATAACCCTCTGCCT12587939GGCG-CTGGGGACCCCTCCTTGTATAGAGGCCCTCTGCTTT

chr1:12638875-12638884

ACCTAGGGCTTCCTTTCTCCTTTTTCATGT12638875GG-GCCTGTGGGTGGGAGTAGGTGTATGTGCTCTTGTGTGC

chr1:12681426-12681436

TTCCCCACTAGGTTCTTTCACTTTAGGATT12681426GGTGCCTGAGGAAGAGCCATGTCCAGTCGCAAAGATGGCAA

chr1:12781305-12781314

GCACTTTCCCACCAAGCAATGAGTCAAGCA12781305GG-GCCTGTGGTGGCAAACACCTTTTCACCTTACCTCCTCT

chr1:12829994-12830003

AGAAACCATGCACTGAAGGAGAAGGAGGTG12829994GGC-CCTGTGGAAGGGTTGGGGAATCTGTGTTGATGCCATT

chr1:12865184-12865194

GTACCACATAGCCCTAAACAGGAGAGAAGA12865184GGAGCCTGGGGAACATCTTTGGAAGTCTTTCAACTTTCTCA

chr1:12881154-12881163

ACGGTTTAAAGAGAGAAACAAGTCTATACT12881154GGC-CCTGTGGTGATGGGATAAATCCTTTGACAAGCTAAGA

chr1:12881667-12881676

CAGTGAAGTGCTCTGCAGAAATACTTGGCA12881667GGC-CCTGTGGAAACTGCATGGAGCTGAAGACTTCTCTAGT

chr1:12951443-12951453

TCATGAACAAGGGAAACTGAAGTCATCATG12951443GGTGCCTGGGGTCCCATCACCTGTCTCATGATGCTGGCCTC

chr1:12988181-12988191

TGCAGTTCACCATGGTGAGTCACCATGGCA12988181GGCGTCTGAGGCAGCTGGTTATGTTATTTCTACCAGCAGAG

chr1:12995133-12995144

CAGAAAGGGTCAAATAAGAATCCGCCAAGG12995133GGCTGCCTGTGGTATCCCTAATTGCAGGTGACTGCAATGAAT

chr1:13003256-13003265

CATCCTTAGCATATGAACAACAGCTGCAAA13003256GGC-CCTGGGGTCAGCATATGTCTGCACCAGCAATGAGCCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

Redirect URI : http://crispr.dbcls.jp/detail/en/mm39/1/GGCGCCTGNGG
lang : en | db : mm39 | k : 1 | strand : | nogap : | query_string : GGCGCCTGNGG | format : html | download : | debug :

0.006 | 0.006 | search_start;
0.552 | 0.546 | search_plus_done; http://172.18.8.138:28851/match?q=GGCGCCTGNGG&k=1&no_gap=0&offset=0&limit=200
0.961 | 0.409 | search_minus_done; http://172.18.8.138:28851/match?q=CCNCAGGCGCC&k=1&no_gap=0&offset=0&limit=0
0.961 | 0.000 | cgi_end;

CRISPRdirect | DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use CRISPRdirect in your work, please cite:
Naito Y, Hino K, Bono H, Ui-Tei K. (2015)
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.
Bioinformatics, 31, 1120-1123. [Full Text]