— Rational design of CRISPR/Cas target.
2025-06-21 21:15:37, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
CTCACGTTCCGCGGGGGTCACCTTGGTTAC3108069 GAG ACCCCGCGG
GTCGGATTCTTCTCAACAGCTTTATTGCAG3627037 GAACCCC-AGG
GAGATACTTGGTAAGCACAAATCCAGTTAT3649502 GAAA CCCGAGG
TGTCAGCATTTGGAGGCTGATTATGGGATG3686818 GAACCCCGGGT
CCTATTAAGCACATAGGAAATCTGCCCACA3721193 G-ACCCCGGGG
CTTGCAAACTTTATATGCCTCAGTACAGGG3947232 GAACCCCA GGG
TTGCATTATTCATGAGGTCTGCTAAGAGCA4284661 GAACCCCC TGG
TTCCCAGCCACTGTCCTCTGGGAATTCCTG4593789 GG ACCCCGGGG
GAGTTTTGTGTGGTGATAAGGCCAGAGCAG4693670 GAAG CCCGAGG
CCAGTGTTCCCTGTGTGCCCAAGAGCCTGA4982220 GAAT CCCGCGG
CTACCATGTGGTTGCTGGGAGATGAACTCA5013702 GAACCCC-TGG
CGCCGCAGCTAGCGAAGTAACCCTTGAAGT5090494 GAACCCCT GGG
AATGTACCTCATGCAGGAGACAGTGGTTCT5114565 G-ACCCCGAGG
TGGATGTCACACTAGTACTAGGAACTCCAG5281705 GAACCCC-AGG
CCTGGGGCACAAGCCCCTTCTGCTCCACTG5493845 GAG CCCCGGGG
TTATCTTGAGTCCAGTGCCATCTTTTGAGT5513002 GAACCCA GTGG
CATGGGAAGACCAACAGTGTTAACTAACTA5602980 GAACCCCA GGG
TATTTACCAATTGGAGCCAACAGGGGGCAG5739359 GAACCCC-TGG
AATAAGTATGCAGGCCTTTCCAAGGGTCTT5817746 GAA-CCCGAGG
CTTGCAAACTTTATATGCCTCAGAATGGGG5975028 GAACT CCGGGG
GGATTTCCTTATCTGCCATCACTGGGAGGG5982191 GAACCCCT TGG
CATAGAGGAAGCAACAGTGTCAACTGGCTA6051184 GAACCCC-TGG
CCAATTCCCATTACTAGCATTGCCAACTTT6084078 GAACCCCT GGG
GCCTTATTTATAATAGCCAGAAGCTGGAAA6195563 GAACCCA GAGG
TTGCGGGTGTCAGGCGACTCCGCTGGCAAG6221184 GAAG CCCGGGG
TTGCGGGTGTCAGGCAACTCCGCTGGCCAG6221383 GAAA CCCGGGG
CTTACTGGGTTCCTTCCCTCAGAACTCAGG6231016 GAACCCCGTGG
AATAAGTATACAGGCCTTTCCAAGGGTCTT6239150 GAA-CCCGAGG
CAGCCTGGTTTCCAGTTGAGGCTAGATCTT6254098 GAACCCC-AGG
TCCCAGAATCACAGGATCACAGAGACAGCT6739582 GAACT CCGAGG
GTAGTGCTCTTTGATTATAGAAGCAGAAAT6868531 GAACCCA GTGG
TCTTCTAGAGGTCCTGAGTTCAATTCCCAG7120179 GAACCCCA TGG
GCATTATTCATGAGAAGGTCTGCTAGAGCA7125857 GAACCCCC TGG
TGTGGAGATTGATGTGAAGTGGCTCAATGA7248901 GAACG CCGTGG
GACCCAAGAACGAGCTCCACCAAAGAGCAG7249659 GAACCCC-TGG
GCCATTCAAACTTCTGCCACAGATCTGTAG7276382 GAACA CCGTGG
ACTTGTATCCCACGCAGGAGTAGAGGAGTC7278593 G-ACCCCGAGG
GGCTGCTCTCAGGGCCTCGAGAGTCTCATC7420595 GAACCCCT CGG
GAGCTGTAGCTTACTTGCGACCCAGTGAGT7673491 GAACCA CGTGG
AATAAGTATACAGGCCTTTCCACGGGTCTT7679467 GAA-CCCGAGG
AACCTGGCTAAAGAAATGTAATCTATCTTG7725437 GAACCCCT GGG
TGAATCTGGGTGAAGAGTATTGAGATGGAA7841815 GAACCCCC TGG
AATAAGTATACAGGCCTTTCCAAGGGTCTT7890455 GAA-CCCGAGG
TTGGGGGTGTCCAGAAACTCCGCGCGCAAG7931822 GAACCCCGGT G
CAGCCTGGTTTCCAGTTAAGGCTAGATGTT7972276 GAACCCCGGGA
CTTATACCCAAACAATGGACAGAAGTCAGG8039576 GAACCCT GTGG
ATTAAGCATACAGGCCTTTCCACGGGTCTT8138766 GAA-CCCGAGG
AGGAATTAGCATAATCAGGTATTTACTAAA8164939 GAACCCC-TGG
CCCGGGAATTAACATCACCGGCATTGAGGA8193132 GAACCCC-CGG
CAGACTTCATTGTTCCTGTGCCTGCTGGGG8219134 GAAA CCCGGGG
AATAAGTATACAGGCCTTTCCAAGGGTCTT8227210 GAA-CCCGAGG
TATGAGGGACAAGTTAAGATTATGTGTTCT8262559 GC ACCCCGAGG
CACGTTCCGCGGGGGCCACCTTGGTTCCAA8319336 G-ACCCCGCGG
TTGCATTATTCATGAGGCCTGCCAAGAGCA8628591 GAACCCCC TGG
TGATCTGGTATTTGGTGAGAGAAAAGAACT8681144 GAAG CCCCGAGG
AATAAGTATACAGGCCTTTCTAAGGGTCTT8858205 GAA-CCCGAGG
TCGCGGTCCCCCTCGCACCCACGAATAACT8964471 GAAT CCCGCGG
CAGACTATGAATTAGTGACAACGAAGACTA9106605 GAACCCCGGT G
TGTCTGGGTTTGGTGGCTGATTATGGGATG9137679 GAACCCCGAGT
CAACCTGGTCTCCAGTCAAGCAAAGGTCTG9383789 GAAG CCCGGGG
TGGCACTGTGGTGGTAGGTAGAGACAAGCA9647596 GAACCCCA GGG
TCTCAGTAATTTCCATCTAATTCCCTATGT9728626 GT ACCCCGAGG
GATTACCTTTCTAGTTACCAGAATTATCAT9813809 GAACCCC-AGG
TGTCCGCACTCGGTACACTCGATGCTGACA9818191 GAA-CCCGAGG
AACGTATCTCACACAGGAGACAGTGGTTTC10065884 G-ACCCCGAGG
CTTTCCTGGAATTTGCTGCGTCTTCTTCCT10074097 GAACCCT GGGG
GAATTCGAAGGCTCTGTAGCTGCTTCACCT10109259 GG ACCCCGGGG
TCTTTCTTGGGCATTTGCTTACGAGATACA10175648 G-ACCCCGGGG
TAGATGTTGCAGGATATTTGATCACACTGT10245877 GAACCCCGAGA
TTCAGTGGAAAAAAATAAATCCTAAATTTA10289274 GG ACCCCGTGG
GAATTCAGTACAGAAACTCAAACAAAGCAG10335304 GAACCCA GAGG
AGCCTATAAATATTAAAATACCTATATAAA10379191 GAA-CCCGAGG
CACGTTCCGCGGGGGTCACCTTGGTTCCAA10452932 G-ACCCCGCGG
GCAGCCCCACGTAAGGTTAGCTTATTCTTA10590434 GAACCCA GGGG
GTGTGTGTGTGTGTGTGCGTGTGTAAAGCA10621145 GAACCCCA TGG
CCCATGGAAAATTACCCAACTCTATTCTAG10688245 GAA-CCCGAGG
AACCTCTGCCCCAATGACTGGCCTAACTGG10726452 GAACCCCT GAGG
AAACTCTGCCCCAATACTTGGCCTAACTGG10727286 GAC CCCCGGGG
CATGCGGGCCCAGCTCCTGCAGCCCCGTGT10876161 GAC CCCCGAGG
CAGTCTGGTTTCCAGTTGAGTTGAGGTGTG10927504 GAACCCCGGGA
ATGCTCTTTGGTTGGTGGTTTAGTCTATGA10937335 GAACCCCA AGG
GGAGGACATCTAAGCCTCGCCCCTGACCAG10938034 GG ACCCCGAGG
GTGGCAAGTGCCACAGCGCAGGAAGACTCA11022908 GAACCCCA GAGG
AGAAGTTGTGTTCCACTCACCAGAGGTCTA11144276 GAAT CCCGTGG
ATCAGAGATGAAAAAGGAGATATAACAACA11308254 GAA-CCCGAGG
GCAGTTTCTTGAGTGGGTTCATGACTTGAA11476834 GAACCT CGAGG
TCTCAACACTGACTTGGAAGCTCAGTGGAA11487047 GAC CCCCGGGG
CCAAGAGGGCAGACTGAATCTTTTGATAGA11504477 GAACCCCA GGG
TTGGTGCTGTGGCAGATGTTATCCATTTCA11769298 GAA-CCCGTGG
ACTCCCATGTCTTGCCTCCCTGAGCAGCTG11838936 GAACCCT GTGG
CCTGGGGCACAAGCCCCTTCCGCTCCACTC12145833 GAG CCCCGGGG
GCAAGCTGGTCTCTGGATGAGCTAAGCTCT12393911 GAACCCCGAT G
ATTGCAAACTTTATATGCCCCAGTACAGGG12522883 GAACCCCA GGG
CCCTGTGGTTATGGAAGTCCAGGCGTTCTT12683689 GAACCCA GAGG
ACCAAATAAGAGGGCAAAGGTTACCAAATG12742200 GAAG CCCGGGG
CCCATCCTACTCTCCTTGCCTCCTCCTGAT12761263 G-ACCCCGTGG
GGTGTCCACAGAGATCAGATGACCACATCA12827036 GAACCCC-TGG
TTGATCTGGGCTATGCCCCACCTGTAACCA13164938 GAACT CCCGAGG
ATGAGGTCTGCATGAGGCAGAGACCTAGGT13194751 GAA-CCCGAGG
CCGTCTAGGTAATTAAATGTAGGGCACTTG13249685 GAACCCA GCGG
AGTTCACATACCTAATTCCAGCACTCTGGG13407377 GAACCCA GAGG
TGCGTCCCGCGCCCCCGAGCGTGGGCCCGG13444508 GAACA CCGGGG
ACTGCACTGAAGCACGAGGAATGTACAGTG13594211 GAACCCC-AGG
TTGGGCTTTCCTCTTCCTGCCTGGTGTTCA13596166 GAT ACCCCGAGG
GCCTTTTCTAGGGGTTTGAGGATAGGATCT13787641 GAACCCC-TGG
GAAAAGAGACCGTGAGCAACAACAGCTTAG13900025 GAACCCC-TGG
TTTGGTTAGACTTGTGACATGCTGGTTTGT13924897 GAACCCCA GGG
CCACCTAGCCATTGCCTGTGCAAATCCATG13942328 GAA-CCCGAGG
ACTTGCAAACTTTATATGCCCCAGTATAGG13984198 GAACCCCA GGG
CATGATGAAGCTATTGCCCATGAAATACAT14230304 GAACCCA GTGG
CGAGGTGCCACCTTAAATCACCTCAGATAT14235621 GAACCT CCGGGG
CTGTTCTGAAGAATACACATGGTCCTCCAT14240986 T AACCCCGAGG
CAGAAGTGGCCACCTCCTGTAGCCAGGCAG14305683 GAACCCCA GTGG
TTGGAGGGTAAAGATTACAATTTTACGACG14379688 GAACCCA GCGG
TCTAGAATGCTCATAGTTCAGTCAGATAAA14482534 GAA-CCCGAGG
TGGGAGGGGCTCATGAGGGAGGCCCTATCA14554558 GAA-CCCGGGG
ACATTGTACTGTTGTGTAGAGCCTGAAGCC14621400 A AACCCCGAGG
AAGGAAGGGGAAGAAAAAAGAAAAATAACA14748966 GAACCCC-AGG
AACGTATCTCACACAGGAGACAGCGGTTTC14759581 G-ACCCCGAGG
GGAAGGGGTGGGGATCGTTTTTTCCCCCCT14826362 GAACCCT GCGG
AAGAAAATCCAGAAAGAATTCAAACAACTA14855455 GAACCCC-AGG
CTTGGAATCTTGGCAATGAACTTGTAATTA14935208 GAACCCC-AGG
CAGCAAAAAAAAAAAAAAAAAAAAAAAAAA14936272 GAACCCC-AGG
CAGCCATGCAGATCAATGGTATAGGACAGA15020487 GAACCCC-AGG
AACAAAACACAAACAAACAAACAAAAAATG15046967 GAACCCCT GGG
TAACCAATGTTCACTAGAGCAGGAGACACT15058264 GAACCA CGAGG
AGATGCCCATGATCATAGAAGAAACCTACA15135751 GAACCCCGAGG
ATCCAAGGAGCAGATTGTAGCATCCAGACA15376416 GAACCCC-AGG
GAACACTCTGGAGTGATAAGACATGATCCC15378579 T AACCCCGAGG
GCATTGGCCGTCTTTAAATGCCATGGTGTT15389723 GAACCCC-TGG
TTAGCAAACTTTATATGCCCCAGTACAGGG15554413 GAACCCCA GGG
TAGAGGGCTCTCCACCCGACAGGTGCCCTA15624610 GAACCCC-AGG
TTGGTAAGGTTGAGCATGTTAGAAGCCCTG15729445 GAACCCA GAGG
TACCCTAGCACTTGGGAGGTTGAAACAGGA15786664 GAACCCCGAGT
TCCATTAAATCTCTTCCCTCAGGGCTTTAG15818174 GAACCCCA AGG
CATTGCCTTAAAAACAATCACAAAAACCAA15953654 A AACCCCGAGG
CCATTGGCAAAATGCTTCTGTAGTGTGCAT15978436 GAC CCCCGCGG
AAGCAGATACTCCCAGTCAGCCATTGGAAT16216848 T AACCCCGGGG
CCGCCGGCTGCGGGGTCTCGGAACCAAGGT16240132 GAC CCCCGAGG
CCTCAACAGCTGTTGATGTGGTGACACAGA16365232 GAACCCCGAGG
CAGTCTGGTCTCCAGTTGAGCTGAGATGTT16391233 GAACCCCGGGA
AATGTCACACACAGGAGAATTCTTAGCTTT16443436 GAACCT CGAGG
CAACATTAAGAATTTCAAGATCTTCCTTCT16517938 GAG CCCCGAGG
AATAAGTATACAGGCCTTTCCAAGGGTCTT16809280 GAA-CCCGAGG
GTTCTGGTTCAAGAGTTTCACACCGAAGAT16871298 GAACCCC-AGG
GCAGTATTCATGAAAAGGTCTGCTAGTGCA16895117 GAACCCC-TGG
GCACCAAATGTGTCCAAGTACATGTGAATT17032692 GAACCCCC TGG
TCTTAAGACTATAAATCAGATCTTCCATGA17132871 GAACCCA GTGG
GACTTGCGGAGTTTCATGCTGCCGAGAAGG17162014 GAACCCCGAC G
CGGGCGTGCCTTGTGGGCCTCCAAGCGGCC17215896 GG ACCCCGGGG
AGCTGTTGGGTTATAATCTTGTCTTAGCAA17219434 GAACCCC-AGG
TGTACTTATCACAGTTCACCATGAGGGTAG17275313 GG ACCCCGAGG
TGTATGAGTTTGGTGGCTGATTATGGGATG17412977 GAT CCCCGGGG
TGTGCCCGATGGGAGATGAAGTATGGCCGC17471558 A AACCCCGAGG
AAACGAAAGAATCTTACTAAAAGAAACCAA17472298 G-ACCCCGGGG
ATACTCTGGTCTCCAGTCGAGCTGAGGTCT17491798 GAACCCCA GTGG
CTCCAGGGGCCTGAGCCATTCATTTGCAGT17798365 GAACCT CGGGG
TGGGGTGGAGAAGGGGTAGCTCCTGACCAG17808345 GAACCCT GAGG
ACCCAAGAGGAGTGAAAGGCAAGAAAAAAT17891050 GAACCT CGGGG
AGAGTCTGGTTTCTAGTTAAATTGAGGTCT17945034 GAACCCCGGGA
AATAAGTATACAGGCCTTTCCAAGGGTCTT18027808 GAA-CCCGAGG
ACTTAGAACAGACATTGGATTGAAGTCAGG18192183 GAACCCCGTGG
TAGAAACCCAAATAAGCTAAATAATAATAA18401379 GAACCCCA GGG
AATAAGTATACAGGCCTTTCCAAGGGTCTT18587877 GAA-CCCGAGG
GCATTATTCATGAGAAGGTCTGCTAGAGCA18773833 GAACCCCC TGG
CACAAAGCCAAACATCAAACTGAGAGAAGA18842093 GAG CCCCGTGG
GATAGCTGCCCAAATAACTGCAGCAGTTGG18847456 GAACCCCC AGG
CATCTTAGCCATTCTGACTGGTGTGAGGTG18903498 GAACCCCA GGG
GTAAAGCCAGTGTTGGGGAAGTGAAGACAG19082426 GAACCCT GGGG
TTTCTCTATACATCGTGTTTCCCACTCCCT19251462 GAACCCC-AGG
CTCCCCGCTCTGGGAATCTCCTGCTTGTGT19283391 GAG CCCCGGGG
GTTCACCTTGGAGTTTAAATGAAGACATTG19352162 GAAG CCCCGGGG
TGTCTGCGTTTGGTGGCTGATTATGGGATG19589284 GAACCCCGGGT
TATCTGCGCTTGGTGGCTGATTATGGGATG19596506 GAACCCCGAGT
AATAAGTATACAGGCCTTTCCAAGGGTCTT19693488 GAA-CCCGAGG
TTGTGGGTGTCGGGCGACTACGCTCGCAAG20115173 GT ACCCCGGGG
ATTTTTTGATACATATGCAGCTAGAGTCAA20123434 GAACT CCGGGG
GTGTATGTTCTTTGATGGATCAGACTCTGA20192040 GAACCCCA AGG
TAAAATGGGAAAGAGCTAACTGAAAGTAAT20209066 GAACCCT GTGG
GAGAGAGCATACACTAGCAGCTTGACAACA20455875 GAA-CCCGAGG
GCGCCTGGTTCCTGGTTGAGCTAAGCCTAG20473428 GAACCCCA GTGG
TTTCATCCACATAGAGCAGGCCTGCCTCCG20628869 GAACCA CGGGG
TGTCTGTGTTTGGAAGCTGATTATGGGATG20665047 GAACCCCGGGT
GGACCTCATGAAATCTGGGGTTGTGGTTCA20761545 GAACCCC-AGG
AGTGCTTGAGGTTACCCACACTCCTATAAA20898811 T AACCCCGAGG
TTTCCTCTCTTTCCTTCAGGTTGTCTAACT21004817 GAG CCCCGAGG
ACAGCTCTCCCCGAGGACTGTCTTCTGCAT21007386 GAACCCA GTGG
GTTGTTTATATCAGCTTCAATCATTAGATA21049319 GAA-CCCGAGG
GTGTCATCTCTTTTATTACAAATCATAAGG21060346 GAC CCCCGTGG
GCTTTCAGAGTTCTGTAACTTGGTCTCATC21689832 GAACCCA GCGG
TGTCTGCATTTGGTGACAGATTATGGGATG21715319 GAACCCCGGGT
ACCCGTGGCACCACACCATGAAAATAAATG21941432 GAA-CCCGTGG
GCGTACAGCCAAGCCTGCCGACCCAAGTTG21946252 GAACCCT GGGG
TCTTGCTTAGGTGTATCTTAAATATTTCAT22142248 GAACCCC-TGG
TCCATCAATTCCCTCCCCTTGCACCTCACA22203400 GAACCCT GTGG
GAATCGGTAGTTGAAAAATACCAGAACCTG22546083 GAACCCCA GAGG
TGATGCTGGGATATCTCATGTTGTGGTGAT22718477 GAACCCCA GAGG
CAGAGCACCAGCTCTCACCCTGCAGGTCGC22728122 GAC CCCCGAGG
CAAGATCAGGTACTGAACTGGAAAAGATTG22858673 GAACCCT GAGG
ACCCCAAATAAATAAAATTTGCAGAATAAC22967549 GAA-CCCGTGG
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/1/GAACCCCGNGGen |
db : mm39 |
k : 1 |
strand : GAACCCCGNGG |
format : html |
download :
0.006 | 0.006 | search_start;
0.273 | 0.266 | search_plus_done; http://172.18.8.138:28851/match?q=GAACCCCGNGG&k=1&no_gap=0&offset=0&limit=200
0.453 | 0.180 | search_minus_done; http://172.18.8.138:28851/match?q=CCNCGGGGTTC&k=1&no_gap=0&offset=0&limit=0
0.453 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.