— Rational design of CRISPR/Cas target.
2025-07-18 06:47:07, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
GTGCTTATGGAGCGACTACTCAGCCAGGGC4422678 CGAGGGCGCCTGCGG
TATCACAGGACAAGTAGAAGGAGGTGAAGA30833890 CGAGGGCG GCCTGTGG
TGCGAGGGGTGGGGCACAAGGCGGGAGGCG46128119 CGAGGG-GCCTGAGG
CCTGAGGCGGGAGGCGCGAGGCGGGAGGCG46128156 CGAGGG-GCCTGAGG
CGGGAGGCGGGAGGCGCGAGGCGGGAGGCG46128289 CGAGGG-GCCTGAGG
CATGGCCGGGTAGCCCGGGAGAGCAGCGGG74990401 CGAGGGCGCCTGGT G
CTCACCAGTGATCCTAAGACCATGGGCATT107946570 CT AGGGCGCCTGTGG
AAGGCCCCTGCCTCCCCAGAGCTGATCAGG132120100 A GAGGGCGCCTGGGG
GACAATCAAGCAAGTTGGGAGAAAACAGCA170557259 CGAGGGC-CCTGAGG
TAGCTCTATGCAGTACTTGAAGAGGCCAGA180602418 A GAGGGCGCCTGAGG
AAGATGGGGAGTTCTGGTAAGAAGCTGCGC182431301 CGAGGGC-CCTGTGG
TTCACTTGTGAATAACAGCTCTTCCCATCC26450406 CGAGGGA GCCTGTGG
GGGGACCCCAGGCGGGGCGCGGTTGGGGCG32202171 CGAGGGCA CCTGGGG
ACGTGGCCTGACTGGTGACTGCCTCGAGGG39311253 CGAGGGCT CCTGGGG
AGGCGAGGAGGGAACCCCGAGGGAGGACCG66087099 CGAGGGCGA CTGGGG
AGAGCCGGGCGCGGTGCACTAGGCGCGGGT154411452 CG-GGGCGCCTGCGG
ATCCGGGCGGCAAGCGGCTCAGCCCCTTCC162502848 CGAGGGCGCC-GGGG
GGCCCATCTGGGCCTGAACTACATCTGGCA168049469 G GAGGGCGCCTGGGG
GAATTTCTGGCCAGCTTTTCTCTGTCACTT169363249 CGAGGGA GCCTGGGG
GCCATAGACCTGTGCCTCGGTTCCCCCCTG172634381 CGAGGGC-CCTGGGG
CAGTGGTACAGGCCTGTCAGCACAGCCACT173371315 CGAGGGC-CCTGAGG
TTTCCCAGAAAATCACAGGAGCGCTGCCAG173850336 CGAGGG-GCCTGCGG
TCTCGCTACACCCGACGCCAGGAAGTTCCC174314588 CGAGGGCGCCG GAGG
TGGTTGTGCAGGATTCCCAGATCCTCTTAC181461761 CGAGGGCC CCTGTGG
AATGACAAGGAGGGTAGTGGCTGCCAGAGA8868997 CG-GGGCGCCTGTGG
CTCATCAATGATCCCAAGATCCTGGGTGTG45908280 CT AGGGCGCCTGTGG
AACGGGGACGGGGGAGGGACGGGGAAGGGG78874171 CGAGGGG GCCTGAGG
CTCAAAGAAGTGAGTTTTCTCCTTCTACCA108472670 CGAGGG-GCCTGGGG
CTCACTAGTGATCCCAAGATCCTGGGTGTG120801166 CT AGGGCGCCTGTGG
GGAGCCCAAGCGGCTTCGCCCAGGCATCCG159545428 CGC GGGCGCCTGCGG
AGGCGGCCCTAGGAAGCCAGGAGGGGCTGA4342800 CGAGGGC-CCTGTGG
GGGCCGAGCGATCTCGGAGGCCACGGCCCC11559177 CGAGGC CGCCTGGGG
CAGGGCGCTCCCCAACCAACGTGCGCCTTG49844806 CGAGGGCGCCG GTGG
TGAGCTCCGGGTCCCTGTCCACCCCATCTG49845394 C-AGGGCGCCTGGGG
GCAAAATAGGGACATATGCTCCTGTCCTTT63925878 CGAGGGCC CCTGTGG
CCTACACCTGTGCCAGAGGATAATGATGTG103756425 CGAGGG-GCCTGTGG
TGGACACTACCTCCAGCTTAACCTCAGGGG106616485 CGAGGG-GCCTGGGG
TGTCAAGAGGCTGGGGATCCCTAAGAACCC109840114 CGAGGGCGA CTGCGG
TTGGACCGATCTTCAACCCAGAGTTAGAGG115798576 C-AGGGCGCCTGAGG
AAGGCTGATGGGGTGGGCTAAGGCACTGCG120125480 CGAGGGCGCCG GCGG
ACTTCTGAGGGCGGTGAGAGAGATGCTTTC142741085 CA AGGGCGCCTGTGG
TGCACACACTGGGATGTCGGACACAGATCA152438296 CGAGGG-GCCTGTGG
CCCATTCCACGCTGTGTCTGCAGTGGACAG152515563 CGAGGGCA CCTGTGG
CTCCTCAGTGATCCTAAGATCCTGGGTGCG56619644 CT AGGGCGCCTGTGG
GAATTCTTGTTGGTCCAGGAATCTTTAGTG64067949 C-AGGGCGCCTGTGG
GGATTTTAACTACTCCCTCATTCCTGGATT102699035 CGAGGGA GCCTGTGG
GACAGTTCCTCACACAGCAGCCTCTCTGCC110335654 CGAGGG-GCCTGTGG
CTGGGGCGGTGCACTCTGCCCGGCCACCAG110848458 CGAGGGG GCCTGGGG
CCGCCGCCTGCTCCGTGGGCTTTGCAGGTA115376340 CGAGGGCG-CTGCGG
CAGCCTGGCTCCTGCGCCCTTGGCTGTAGT117407717 C-AGGGCGCCTGCGG
CTTGTTGACCAGCGCTTGACTGTCTGGACG124578268 CGT GGGCGCCTGTGG
GGCACAAGGTCCTCGAAGCAAGAGCATCCC137786711 CGAGGGCA GCCTGAGG
CCCGTGGCCTCGTTACGGTCGGGCAGGGCG140307217 CGA-GGCGCCTGGGG
CAGGGAGGAGGAAGGGGAGGAGACAGGCGG4600922 CC AGGGCGCCTGGGG
CTCACCAGCGATCCCAAGGTCCTTGGTGTG18359239 CGAGGGT GCCTGCGG
CTCACCAGTGATCCTAAGCTCCTGAGCTTG42872805 CT AGGGCGCCTGAGG
TGCCTGTCAGCTATCCTAAACTCTTGAGTC50610801 CGG GGGCGCCTGGGG
ACCTCCTGGGGCCCAGGTGAGGCGGAGAAT52299034 CGAGGGCGCCTGCGC
CCCGGCGCTGAGTCAAAGCCCACACAGGGA72166182 CC AGGGCGCCTGGGG
CGCGTGGCACGGAGCATCCAGCGCCCAGGA88851746 C-AGGGCGCCTGGGG
TGTAGGAGGGGCGGTGTTAAAGGGTAGAAG112457003 CGAGGGCG-CTGGGG
CGGTTGACTCGCCCCGCTGAGGCCGTCCCG117884015 CGAGC GCGCCTGTGG
GAAAGGCCTGAAACCAGAGAGGATGAGATG136443687 CC AGGGCGCCTGTGG
GCGCCATCTGAAAATGGTTTTGACGCACTT140079616 C-AGGGCGCCTGAGG
ATGTGTAGCGGCTTCCCTGAGTCCTTGGTG3159066 CGAGGGCT CCTGGGG
CTCCCTACCGCCTGGAGGAGGCGCTGCGGG18865682 T GAGGGCGCCTGGGG
CCAAAACCAGTAAGGCCCAACGAGGACGGC19037928 CA AGGGCGCCTGGGG
CAAGGAAGCTTGGGCTCTTCCCAGCCCTAC37070514 CGAGGGCGCCTGTGT
TAAAGGTGAGACCAGTCCCTGGATGGGCTG37178956 CG-GGGCGCCTGGGG
CGTAAAGCACAGCGGCCCAGCGGAGCCTGG99691602 CGAGGGCC CCTGAGG
TGAACCCAACATCATTGGTTCAGATCCCAA115683758 CGT GGGCGCCTGGGG
CCAGATGAGCGTTTGTCTATCAAGAAAGCT116479239 CGAGGGCA GCCTGAGG
TTCTTCCAAAGGACACTCCGACTATCCAAC126181981 CGAGGG-GCCTGGGG
CTTCCCTGCTCTTACCCGGAGGTAGTGAGC128346912 CGAGGGCGCT TGGGG
CAATAGCTCAGACTCTGAGCAGGAGCAGCA13196121 CGAGGGC-CCTGAGG
GCTACATGAGACTGGCTGCCGTTAAAAAAG35627865 CGAGGGCGCCTGGA G
AGGGCAAGGGCGCACGGGTAGCCGAGAGTC40876708 CGAGGGCGCC-GTGG
GCACATTGAGACCAAAAGTCAGATCAAAGT46873898 C-AGGGCGCCTGTGG
CCGGCATCTCTGCATGTGGGGATGGCATCT71998081 CGAGGGC-CCTGTGG
AGCGTTGCTGGAGCTGCTAGGGGAACTGGC79162905 CGAGGGCGCC-GCGG
CCATTTGTCTGCTATGGAGGCATGGGTGGG85136723 CGAGGGC-CCTGGGG
TTCACCAGTGATCCTAAGATCCTGGGCATT87388365 CT AGGGCGCCTGTGG
GGCCCCAGGCTTACTCCGCCATCGAGGCCA126636491 A GAGGGCGCCTGAGG
CGCTCAATGTCACCGCGCGCTCCAAGTCCT44711022 CC AGGGCGCCTGCGG
GATGGTCCTTACAGAGGACGCCATGAAGGA45818054 CGAGGGC-CCTGTGG
ACGCGGGATCGTAGTTCTCATACTGGTTTA58219614 CGA AGGGCGCCTGCGG
CTCCTCTTTCAGTCCAACCAGAGTTTATAA67073786 CGAGGGG GCCTGGGG
TTCCCTCCGCCGTCTCTCCGGTCGCCCGCA86349143 CGAGGGCG-CTGTGG
ACCCCACTGCGGTCCGGGGAGGCTGTCCTC86454433 CGAGGGG GCCTGCGG
AGGCGGCGGTGGCGGCGAGAGCCGACGGGA115139466 CGAGGGCGCCA GAGG
TCATCACCGCCGATGCGGATTCTGAGATGC115590973 CGAGGG-GCCTGAGG
CACAGTTAATGGTGCTGCTGTTCCCCGAGA11268163 A GAGGGCGCCTGGGG
GGAGGATTCCAATAATCTTTAGGAGGGAGC12581779 CGAGGGCA CCTGGGG
GTCTGCGGAGGCCCCGAGGCGAGGGAACCC42455619 CGA-GGCGCCTGAGG
CTACGACTTCCAGACGCAATTTACTCCAGG61968966 CGAGGGCGCCTGCA G
CGAGCTGCTGAAGCGTGTTTGCAGGGACGG79511357 CG-GGGCGCCTGAGG
GCTGGCCAGGCAGTCACGAGTGCGAAAGGT128204205 CGAGGGCGG CTGAGG
CCGGGCCGCCCTGGCCGTCCTGGCGCGGGG128212853 CGAGGGCGCC-GAGG
GCACCGCTTATGTCTGGTGTCTGTTTCCTC8947054 CGAGGGCT CCTGAGG
CTCCTCAGTGATCCTAAGATCCTAGGTAGG39936452 CT AGGGCGCCTGTGG
CTTGGCTCAGGACTGGGAATCTAAATGAAA85727120 A GAGGGCGCCTGGGG
CGCTGTGGCCCGGCTGCTGAGATCCATGAC90278697 CGAGGGCGCC-GTGG
TCTGGGAACATGTCTTTTTAATGGCAGACA90466052 CGAGGGCG-CTGAGG
TCTTCAACAGCGCCCGGACCCAGCGCATGG94932085 CGAC GGCGCCTGCGG
AAAAGCTAAATTTGCAAGCCTCCTCACCGA102497780 CGAGGG-GCCTGTGG
TGGGCGGAGCGAGGCCGAACTTAGGCGGTG102992549 CGA-GGCGCCTGCGG
TATCAGAGCGGTGGGTTGATGGGTCCTGCC103603121 CGAGGGCGCCTGGA G
GGACCCTTCTCTGAGAGCTTGTTCCCATAA113281899 CGAGGGC-CCTGGGG
CTGCTGCGCCCTCTGAGTTCCTACCCGAGG115656467 CGAGGA GCGCCTGGGG
TCTTTTAGCTTCCTTCCAGGCAAGATGTAG117344464 CGAGGGC-CCTGAGG
GGGATAGTAACTCTAGCCTTGCCTGTCTTA3887272 C-AGGGCGCCTGTGG
ATGCACTTGTGCACTTATAGCATCTGGAGT24249956 CGAGGGC-CCTGGGG
TCTCCTCAGTGACCTAAGATCCTGGGTATG44754872 CT AGGGCGCCTGTGG
GGCAAGGGTCACTTCATGCAAGGTTGTCTA51036871 CGAGGG-GCCTGAGG
GGTGGGGAAGCTGAAGGAGAATCATGAGTT105720799 CGAGGGCA GCCTGGGG
TCTGATGCTCTCCACTGGGCTGACCTCCTG107701227 T GAGGGCGCCTGAGG
AACGAAAACTCCAGCGAGCCTTGAGACAGC110155926 CGAGGGCGCG CTGAGG
TCGGCGGCCCGGGCGGGGGCCAGGGCAAGA20275017 CGAGGGCGCC-GCGG
GTATGCCTCCAGCGGTGCAGGCACGCACAG42499937 CGAGGGA GCCTGTGG
GTCGTGCCCCCCAGGGTGAGCGGCTTCCCC58275140 CGAGGGCA CCTGGGG
CTCACCAGTGACCCTAAGAGCATGGATGTG85153904 CT AGGGCGCCTGTGG
AGTGGAACACAACATCTGTTCCAATCAAAC90277006 CGAGGGT GCCTGAGG
CTCACCAGTGATCCTAAGATCCTGGGCATG91711657 CGAGGGCGCCTGTT G
ACTCTGGCCGTCCACGGAGGACCCTCTCTG94247258 C-AGGGCGCCTGGGG
GGCGGGCGGCGGCGGAGAAGGCGAAGGCGG95511546 CGAGGGCGCCT-CGG
ACTCAATGCTGCTCTTACAACCGGAGGTCC96165098 T GAGGGCGCCTGAGG
CAGATGCACTGCCCCAGCACACACTGTTTA102895503 CGAGGGC-CCTGGGG
TACATAATAAACGATGCTGTGGTGCAATTA107288615 CGAGGGCGCT CTGGGG
AAGAGGGGCAAAGCTCATTATAACTGTGGC7059530 CGAGGG-GCCTGAGG
CTTACCAGTGATCCTAAGATCCTGGACGTG8704800 CT AGGGCGCCTGTGG
GTTACCATTGGGCGCGGCGACGTGAGAGGG20979448 CG-GGGCGCCTGTGG
TTAAAACTCAACTCCGAAGGTCGGAGCGCA22040961 CGG GGGCGCCTGGGG
TCTATGGAGTTGCGCATCATGGCTTCTGCC30986396 CGAGGGC-CCTGTGG
TTCACCAGTGATCCCAAGATCCTGGGTATG40203741 CT AGGGCGCCTGTGG
ACAGGTGGTCTCGCCACGCCTCCCCGTCGC47119569 CC AGGGCGCCTGGGG
TAGTCTTGGCCCTCAAGTCAGGGGAGGGGG70815298 CGAGGGCGCC-GCGG
GTCAGCAGTGATCTCAAGATCCTGGGTGTG13869789 CT AGGGCGCCTGCGG
GTTCCACTCAACAGTAAGATCCTGGGTGTG32998160 T GAGGGCGCCTGTGG
CTCACCAGTGATCTTGAGATCCTGGGTGTA47326084 CT AGGGCGCCTGAGG
TTTACTGAGATACCGCAGGATGCCACTGTG62050628 C-AGGGCGCCTGCGG
GGGCCAGACTGCTCACCTGAGTCCTTGGTG75628486 CGAGGGCT CCTGGGG
AGTACCGTGCGTGCGCTGGTGAGGACGAGA78682613 CGAGGC CGCCTGTGG
GAGACCCGAGGCCACTGAGTCAGCCTGTGC81101214 CG-GGGCGCCTGGGG
AGCTCCAGGAGTTCTTATGCCTCCGGTCCC98565475 CGAGGGCGCCTGCGT
CAAGAGCAACGAGGGTATGGGCTAGGCGGG102234987 T GAGGGCGCCTGGGG
TCCGTTTTCCCTGCACACATTGATCTGTCG103015595 CGAGGGCA CCTGGGG
GCGGAGGGCGCGGAGATCTGGGCCAAGTAC17577679 CGC GGGCGCCTGGGG
TGTAAACAGTGTGCGTCTGGTGGCGGAGCC33650608 CGAGGGCG-CTGGGG
ATCACCCCCACCTGAGAGAGGAGCTTGAGG71825823 CGAGGGCGCCA GTGG
ACAGCTGTGCCTCCGACTCCTGGATGACTT90724108 CGAGGGCT GCCTGTGG
AAAGACATTTTGTAATTCACCCAAAGGTCC92394623 CGAGGGA GCCTGCGG
CTTACTAGTTCACCAACTTAGACATAGGTG93283308 CGAGT GCGCCTGTGG
AATCTGGAGTGACAGACAGGTCCTCGAGAC15784226 CGAGGGCGT CTGGGG
CAGTGGAGTGTTCGCCACCAAGGTGACTAC25254889 CGAGGGT GCCTGTGG
CGCCTCCGGCCACAGGGCTATCTGTGGAAG28439066 CGAGGGCA CCTGCGG
CAGATCAACAAGCGCAGTGAGCAGATATTC35578453 CGAGGGA GCCTGAGG
CAGATCGCCAAGGGCCATGAGCAGAGTTTC35658649 CGAGGGA GCCTGAGG
CAGATCGCCAAGGGCCATGAGCAGAGTTTC35752580 CGAGGGA GCCTGAGG
GTCTTTGGGGAGGATATAAGTGTTACCCAG15195110 CGAGGGCGG CTGGGG
GAGGCTTAAGCAGGCAGACTGCCATGAGTT34063165 CGAGGGCA GCCTGGGG
AGGAAGAGAACTGTCCACCCAGAGGAGAGG35896581 CGAGGGC-CCTGAGG
CCACTCTGGCTCCCCACCCCCACCATCCAG38291505 CGT GGGCGCCTGGGG
CCTCCTCAGATGCTGAAGTTCCAAACAGTT4651649 CGAGGGG GCCTGAGG
CTGCCCCACTCCCTGGCTCCCTGCCACTGT6598633 G GAGGGCGCCTGTGG
TGCAGCTGCGGACGCGGCAGGGCGGACCCA7394793 CGAGGGCG-CTGAGG
CTCACAAGTGATTCCAAGTTCATTGGTGTG13501444 CT AGGGCGCCTGTGG
TGACGTGACGCGGAAGGATACGCGCTCGAC40861986 CGAGGGCGG CTGAGG
TGCCCTAATTTAGGCTTGTGTCGTTGCCTT41583718 CGAGGG-GCCTGGGG
GAGAGGGAGGGGAGGCGGAGGGGTGGTCTC45120561 CC AGGGCGCCTGTGG
GAGCTGCAAGGGTCCTCCGCCCGGGGCCTG45222293 CG-GGGCGCCTGGGG
TCCTCCGCACAACTGCTTGCTCCATCTTAG11865530 CGAGGGCGCC-GCGG
CTCTCCAATGATCTCAAGAGCCTGGGTGTG23768232 CGAGGG-GCCTGCGG
GGCGGCGGCCGCCGCATCTGCGGCGAGCTG70408568 CGAGGGCG-CTGGGG
CTCACTAGTGATTCTAAGATCCTGGGTATG77665390 CT AGGGCGCCTGTGG
AGTCGGCCCTAGGAAGCCAGGAGGGGCTGA94605907 CGAGGGC-CCTGTGG
CTCACCAGTGACCCTAAGATCCTGGGTGTG106421592 CT AGGGCGCCTGAGG
GATCGGTGGCTGCGGGAGCGAGATGGGCGC167579372 CGAGGGCG GCCTGCGG
TCTGAACACAAAGCGGCCACAAGACAGTGG36077823 CCACAGGCGCCCTCT
AAGAGGGCATAATCATGCTTAAAGCCACTG38548277 CCCCAGGCGCCCTCT
GATTTCCCTCTGTCAGAAGTGGTCAATTCT38976047 CCACA-GCGCCCTCG
ATCAGCAAAAGCAGCCTGCTGGCCACAGCT39734588 CA GCAGGCGCCCTCG
AGCGGGTGAGGCGCAATGGGTCTCCCACGC59952360 CCGCC GGCGCCCTCG
GCGGCGGCAACAACGGAGGCAACGGAGGCG59952525 CCTCAGGC-CCCTCG
GTGAGCACTGCACAGTACGAGGGAGGAATA71471500 CCACAGGC-CCCTCG
TCTCATGGACTTGCCCTGCCTCTACTGCTT119474853 CCACAGGCGCCCTCA
ATGGGCAGCTGTGTACCTGCCTTTCAGAAG132235604 CCCCAGG-GCCCTCG
CCAAGCAGCTGTGCGAGTCGAGCCGCAGCT135211518 CCG-AGGCGCCCTCG
TCTGACCTCACTTCACATTGTAAAATGCTT136622912 CCGCAGGCGCCCTCT
CTGTAAATCCTTCAGTGCTTGCTCTGGCAG156441975 CCTCAGGCGT CCTCG
ACAGCTCTCCTGGGTAAAATTTATTATCTA184948739 CCCCAGGCGCCCTA G
GGTCCCACGGTCCCCAGAGGACTCTTCGAG187225566 CCTCAGGCGCCCTA G
CGCGTCGCCCCAGCTGCCAATGCGTCCTCC189076150 CCGCA-GCGCCCTCG
CCATCAGTCACTTCCTCAACCGAGCTGTCT4348970 CCCCAGGC-CCCTCG
TGTCCCACAGACCCCAGAGGACTCTCCATG12916808 CCACAGGCGCCCTA G
AACTGCCTCCTGAGCCTGCACGAGATCACT18786295 CCCCAGGCGCCC-CG
TGCTCTTGCGCCAGGTGCGCTCTGCCAAGT25290969 CCCCAGGCGCCCTCT
GGTTGGATTCTCTGAATAGCTGACGAATGG31328098 CCTCAGGG GCCCTCG
AGAACCCCTGCAATGGTAGTCATGGCTTCC31822745 CCACAGGC-CCCTCG
CCACTTGACAGACTGCAGCAGCAGCCTTCA32069039 CCACAGGCC CCCTCG
AGGTGACAGGTCTTGTGTTCTCTGCTGTCT32269933 CCCCA-GCGCCCTCG
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/1/CGAGGGCGCCTGNGGen |
db : mm39 |
k : 1 |
strand : CGAGGGCGCCTGNGG |
format : html |
download :
0.006 | 0.006 | search_start;
0.377 | 0.371 | search_plus_done; http://172.18.8.138:28851/match?q=CGAGGGCGCCTGNGG&k=1&no_gap=0&offset=0&limit=200
1.491 | 1.114 | search_minus_done; http://172.18.8.138:28851/match?q=CCNCAGGCGCCCTCG&k=1&no_gap=0&offset=0&limit=23
1.495 | 0.004 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.