— Rational design of CRISPR/Cas target.
2025-06-21 21:49:20, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
CTCCGCAGACTCTGTTAGGTAGTACACAGA3079387 CCAGCACCAA C
CAACTTCCATCTGGAGTCTTGGAATTCCTT3141921 CCTGCACCC CC
AAGTCCCCCATATCCACCCACCCCCACTCC3206897 CCTGC-CCACC
AGAAAATTGGACATAGTACTACAGGAGGAT3249773 CCAGCAA CACC
GTGATGTCCGGGTGATATATCTTCACGTTG3270509 CCTGCACA CACC
ATCCTACCACGCCTCAAATCTAACATCTAT3291231 CCTG-ACCACC
ATCCACCCCCACTGCCCCATACCATCATCA3320795 CCAC CACCACC
CTTAATGAGAATTGGTCCTCTTGTGAATCT3345463 CCCGCT CCACC
CAGGAATGAGTTCATCCATATTTTATGCAA3473949 CCAC CACCACC
CAGTGAACACTTTCAGATAGCAAGAACAAC3512390 CCCC CACCACC
ACACTTTCAGATAGCAAGAACAACCCCCCA3512396 CCAC CACCACC
AAAAAAAAAAAAAGACGAAAAAAAAATCGG3626777 CCTGCACCAG C
CGTACTCTGGTCAGTGTTGGGAACTTCTTC3637593 CCTC CACCACC
AATAGCCTACAAAATGTGAAAAGATCATTT3670886 CCAA CACCACC
GCTCTGCTCAACTCCTTCATGCCTTCAAAA3683843 CCAGT ACCACC
CCTCTGCCTCTCAAGTCCTGGGATTAAAGG3699490 CA TGCACCACC
TGGTCACAAAAGCTCAAGAAGAGAAATTGT3735649 CCAGCA-CACC
GGAAGCTGAACACTTGCACAGAAAGGGAGC3741115 CCAGCACCACG
CCAAAAAAAAAAAAAAAAAAAAAAAAAACA3743077 CCAC CACCACC
ACCAAGGACTCTTGCCTATGTGCGAACCAC3761652 CCAGCACC-CC
TTTATTTATCTTCCTTAAGGAATTTATTCA3792418 CCAC CACCACC
TTTTTGTAAGTGAAGATGTGGTAAATCAAA4002495 CCGG-ACCACC
TTCCAGCCCTGGGTCATCTCCTGACCACAC4027749 CCTGA CACCACC
ACTCCACCATTTTTCTATACTATGTACTAC4089724 T CAGCACCACC
TCTCTGCCCTTTGAGTGCCCAGATTAAAAG4124939 CA TGCACCACC
AGTGGTGCTGTCTATGTGTGCTTCAGGGTT4131272 CCAGCT CCACC
AAGTCCCCCATATCCACCCACCCCCACTCC4149597 CCTGC-CCACC
TGACCTTACAGCAGGTGCTGGGTGCACATA4163869 CCTGCA-CACC
CTTCTGTTACCAAGAAGCTCAAACTAAAGG4168017 CCTGT ACCACC
GCCTCTAATCTGCTTAAATGAGGGTGCTCC4171144 CCCGC-CCACC
GGTGCTCCCCCGCCCACCTACCCACTCCTA4171166 CCT-CACCACC
AGCCTGTCCTTTGACTAGCATCCCAACCTT4205001 CCTGCC CCACC
TCATATTATATATTTGATCATACTCTTTCC4278906 CCTC CACCACC
AAGTCCCCCATATCCACCCACCCCCACTCC4283011 CCTGC-CCACC
AACAAGGCCGGGTGGGCTGGGGCTGATTGC4325973 CCAGCAG CCACC
CATCTTGGTCCTCAGTACTCATTTGCTCTT4350645 CCAG-ACCACC
ACTAGGGCTGGTAGCAAGGAATGTGCACTG4358044 CCAC CACCACC
ATCCCCAGTGGCATGCCTCTTCCAACAAGG4358687 CCAG-ACCACC
TTCTCATTTATTCCCTTTGCCCCGCTAACT4359301 CCAGCACCACT
ACAGTTCCGTGGGTATGGGACCTGACTCAA4424755 CCC-CACCACC
ATTAGATGCTGAGAAAGCATTTGACAAAGT4425885 CCAGCACC-CC
CATTCTTTGACCTGTTGACCACCAGTTGAA4450200 CCAGCACCAT C
GGTTTTTCTACATGCAGCTGTCCAGTTTGA4457871 CCAGCACCACT
TACTGATAGCACTGCCCACATTGAGAACTG4462513 CCT-CACCACC
TCGCTGTAGCCAATTGTGACCAGACTTTTT4470748 T CTGCACCACC
CTCATGTTCTCCTTTGATTTCATCCTGAGA4474639 CCAC CACCACC
TGCCTATAGTTCAAGATGTGAGCCAGACCC4476528 CCAGCC CCACC
TAACATGCCCCCAGTTCTCCATGCCCATCC4480966 CCAGCAT CCACC
CTGAGCAGTGTCTGCATTCCAAGGCTCCAG4482870 CCTGT CACCACC
GAAAACACTCTAACTGCCCTAACAGCTGGG4487766 CCAGCC CCACC
CAGGCTGAACCAAGGGATGTTTATGCAGCC4495306 CCAC CACCACC
GACCAACAATATGAATTAACCAGTACTTCC4499632 CCAC CACCACC
ATATATATAAAGAACTGAAGAAGGTGGACT4510456 CCAG-ACCACC
GTGAGTGTCTACATTATCTACTGTCCCTCT4543284 CCAG-ACCACC
CAAAGATAGTATCCACCCTAACCCACTACC4547372 CCTGCACC-CC
TTCAGTCCTGGGAATCAAACCTATGGCCTT4576150 CCTGCT ACCACC
TCTCCTGTCCAGCTAAGTGCAGTTTCTCCA4588582 CA AGCACCACC
GGCTTCACAACGGAGGAACCTAGCCTGTCA4593622 CCCGCACT CACC
CTTCTGCCTCCTAAGCACTGGGATTAAAGG4617246 CA TGCACCACC
GACTCTGAACTTCCCTGATATTCACTGTCC4618385 CCCGCAC CCACC
GGAACCAAGACCACTCACCATCACCAGAAC4631606 CCAGCA-CACC
CTTGTCAACTTTCTCAGGCCGGGCCTTCTC4644552 CCTGC-CCACC
CCTGCCTCAAGTGCTCAAGCATGGCTATGG4648029 CCAG-ACCACC
AGGTGTTGGCGTCTGTGGAAGGCAGAAGCG4651431 CCTG-ACCACC
CTGCCTTACACACAAACAATCCATCCCTCC4668666 CCTG-ACCACC
GGCCTGGGCCCACCCACGTGCTCCCTTCCT4686625 CCA-CACCACC
CTCCACCTTCTTCCAGCTTTGCTGACTGTA4690070 CCAC CACCACC
ATCATTCTGTGATGGGGATTTGTCTATCAC4697765 CCAGC-CCACC
CCGAGTTTCTACAGAAGTGGGTTACAACCG4714065 CCAGCA-CACC
TTTACATTTCAAATGCTATCCCAAAAGTCC4732748 CCTA CACCACC
CCTCTGCCTCCCAGGTGCTGGGATCAAAGG4750606 CG TGCACCACC
GGAAGCCACCAGACCCCCAACCCCCCCCCC4757048 CCAGC-CCACC
CCTTCTATTCTTCTCCCTCCTCCTCCTTCT4771007 CCAC CACCACC
TCTTAGAGAAGTTTCTATATAAATCCCACT4774910 CCTC CACCACC
CTGCTCTGCACATACACTATGTCTGGGCTG4793156 CCGGCACA CACC
CACTATGTAGCTCAGGGTAGCTTTAAACAT4850373 CCAGCAA CACC
CATCGCCAGAGTGACGCGGCCCCTGCACTC4855772 CCCGCACCG CC
CCTCTGCCTCCCAAGTGCTGGGATTAAAGG4873294 CG TGCACCACC
AGAGCCATTAAAGGCGTGTGCCACCACCAT4882675 CCGGCACCACC
ACTCTGCCTCCTGAGTACCGGGATTAAAGG4903045 CA TGCACCACC
TGGCTTGCTCAGCCTGCTTTGTTTTAGAAC4922914 CCAGG ACCACC
CCTCTGCCTCCCAAGTGCTAGGATCAAAGG4935144 CG TGCACCACC
CTTAAGGCTTGTTGCTCTTTTTTATACAAT4957436 CCAGG ACCACC
CCTCTGCCTCCCAAGTGCTGGGATTAAAGG4972414 CA TGCACCACC
CCTCTGCCTCCCAAGTGCTGGGATTACAGG4974034 CG TGCACCACC
CCTCCCGAGTGCTGGGATTAAAGGCGTGTG4995152 CCAC CACCACC
CAAACAGATCTCAATTACTCATGCTGAAGT5006297 CCTGCACCACC
CCTCTGCCTCCCAAGTTCTGGGACTAAAGG5058522 CA TGCACCACC
TCCCTCCCTCCGGAGTGCTGGGATTAAAGG5068621 CG TGCACCACC
CCTTTCCAGCACTCTCAGGACAGAAACCCT5088254 CCTGCACCACC
CATTTTTCGTCCCTCGCTGAGTCTCAGAGT5089267 CCGG-ACCACC
ACAACTGGGGCTATGTAGAAAGCACTTTGT5092290 CCA-CACCACC
TGGGGCTATGTAGAAAGCACTTTGTCCACA5092295 CCAC CACCACC
TATGTAGAAAGCACTTTGTCCACACCACCA5092301 CCAC CACCACC
TCCACACCACCACCACCACCACCACCACTA5092319 CCAC CACCACC
CCACCACCACCACCACCACCACTACCACCA5092325 CCAC CACCACC
TTGCTGTAGCCAATTGTGACCAGCCTTCTT5115102 T CTGCACCACC
AGCTGACCTCCCCCACCCCTGACTCCGGGC5241033 CCAC CACCACC
TCCAGTAAGTAAATGTTAAGTTTTCAAGGT5254963 CCTGCAA CACC
GAAACCAAGACCACTCAGCTTCATCAGAAT5266717 CCAGCACT ACC
CCTCTGCCTCCCAAGTGCTGGGATTGAAGG5285792 CG TGCACCACC
TTGTGCTAGCAGGAACAGGGACAAAGGACA5317059 CCCGCACA ACC
CTCTCTCCTGCTATACTACCCTTATCCATA5318887 CCAC CACCACC
CTTCCACTTTATAAGTACTGGTATTAAAGG5383899 CA TGCACCACC
CCCATAATCATGGGCAGTGGCCAGTGGTAG5394651 CCAGCT CCACC
TGACTCCAGCATGTGTTGATAAAAAACTAT5396313 CCAGCACA CACC
GGAACCAAGACCACTCACCATCACCAGAAC5421859 CCAGCA-CACC
GGCCTTCTGGTCATCTCTCCCCACACCTGA5435228 CCCT CACCACC
TAATGACTACCCCAAGGTTGTGCCCTTTCT5441138 CCTG-ACCACC
AACATCAAAATAGAAATAGCACCTGGCAAT5441510 CCA-CACCACC
TCCAGTAGACAAACAGATGATAAAATATTA5453738 CCAG-ACCACC
TTGTTGCTCTCCTCTCTTTTACCTTTTCAC5536428 CCTGCACA ACC
TTCTGTCTGCACCCCAGAGCTGATCCTGAT5567264 CCTGCACCACA
TGGTGAAACAGCAATCATCTTGAGTCATAA5581214 G CAGCACCACC
TGGTTGTGGAATGTGTATACATGCTCTGGG5613061 CCTC CACCACC
TAGCAGCTGCCTTGATGTTGACAGTGAAGA5663920 CCAGCAT CACC
AGCTAAGATAAAAGGATGGACCATCCAGAC5702567 CCTGCC CCACC
TGATCACAGGCACCACTCCCCCTTCTTCTC5730371 CCAGCC CCACC
AAAAAAATTACAAAATATCTCTTCACAAAT5746717 CCAGCACT ACC
TCAAGTACCCAAAGAGTATATTCGGGTTTC5785002 CCTGCC CCACC
TCCTCCTACTTCTATAAAGGTGTCCCCTCA5788604 CCTGC-CCACC
ATTGCCAACTCCTCCTAGATCAATCCTTTA5855968 CCC-CACCACC
GCTATTCTTATACAGTAGCAGCAACTCGAT5858658 CCA-CACCACC
CCAGTCTTCAAGAAGATATCCCCATGCCAC5951264 CCTA CACCACC
TAGATAGATACATACATGTAGGTTTGTTGT5969260 CCTGCACCAG C
TTCTTGTCAGTCACAGCTAGGTTCTAGCCC5985892 CCTT CACCACC
TCAGTCACAGCTAGGTTCTAGCCCCCTTCA5985898 CCAC CACCACC
GCTAGGTTCTAGCCCCCTTCACCACCACCA5985907 CCA-CACCACC
CTAGCCCCCTTCACCACCACCACCACACCA5985915 CCA-CACCACC
CCACCACCACACCACCACACCACCATACCA5985931 CCA-CACCACC
ACACCACCACACCACCATACCACCACACCA5985939 CCA-CACCACC
ACACCACCATACCACCACACCACCACACCA5985947 CCA-CACCACC
ACACCACCACACCACCACACCACCACACCT5985963 CCA-CACCACC
GCCCGGACACCCGGCGCGACTCTGCTGTGG5987089 CCAGA ACCACC
AGCAGAGACTGAAGGAAAGGCCATCCAGAG6018368 A CTGCACCACC
TAGCAGATCTCAAAGATCTCCTACAACCTT6030371 CCT-CACCACC
TTACTCTGGGCATAAGGATGAAGTTTTTCA6042247 CCAG-ACCACC
TAACTGTCTGTAACTCCATTCCCAGGGGAT6072916 CCAGCACCAT C
CTTTGTGCCCTTTATGGTAGCTGCCTGGGG6085762 CCA-CACCACC
AATACATCCCAACCAAAGCTTCACCACTGC6136876 CCTGC-CCACC
GTCAACAAGCTTGCATGAGAAGAACTTCTT6159172 CCTGC-CCACC
CCTCTGCCTCCTGAGTGCTGGGATTAAAGG6169417 CG TGCACCACC
CCACCCTAGTGCTAGGATTAAAAGCATGTG6232273 CCAC CACCACC
CCTCTGCCTCCCAAGTGCTGGGATTAAAGG6232955 CA TGCACCACC
CTAGAAAAACAGACAGGGGCTCTGTAGGGC6236745 CCTGCAT CACC
CCTCTGCCTCCCAAGTGCTGGGATTAAAGG6260015 CG TGCACCACC
CCTCTGCCTCACGAGTGCTGGGATTAAAGG6279032 CG TGCACCACC
TTAATATCTGTGACCAGTTTTACTAGAAAA6313668 CA GGCACCACC
CTGACTTGTGTCTTTTTTTTTTTAATTCCT6336702 CCAGCACC-CC
GTCTTGGCTGAGCTGCTCATTCTTTTAGAA6352235 G CGGCACCACC
TGCCACAGAGTAGTACATAGGGACCCAGCC6356156 CCAGCACCACT
TGACTTGCTCTGCCTGCTTTCTCATAGAAC6372749 CCAGG ACCACC
GCTTTGTGTGACCCCTTCATGCCTTCAAAA6396508 CCAGT ACCACC
CCTCTGCCTCCCAAGTGCTGGAATTACAGG6419223 CG TGCACCACC
TTCACACTGTCCAAACCCAAGCAACAAGTC6427958 CCAG-ACCACC
CATACCCTCGTCCTGGGTTCTCTTGGTCCC6429435 CCAGCACCG CC
CGGACACGGAGGCCATGTGGCTCACTAAGC6429571 CCAGCACC-CC
CATCTCTGGCACTGCATTGTGGTGGATCTT6432257 CCTGCA-CACC
TCTATAAATGGCTTCCTAACAAAGGATGTC6444424 CCTGT ACCACC
CTTCTTTCCCACGAGACCTGGACTAGATTC6454671 CCAGCACCAG C
TTCCCCCTGCTTCTTATGAGGATGCTCCCC6481893 CCCC CACCACC
CCTTGGTGCTATTTGTATTTTGACGATAAT6485999 CCTGCC CCACC
CCCGGGCGCACAGCCCTTAATTCACGGCCG6511621 CCGC CACCACC
GCTCAGCCTGCTTTCTTATAAAACCCAGGA6538537 CCAGCACC-CC
TGCCTATGTATGCGTGGTGGCCAGCAGTAG6541688 CCAGCACCACC
ATTTCACCCCCCTCTACATCTCATAGTTCC6641207 CCTGCACCT CC
AATGAGGAAGCACCGTCTGGCATCCAAACA6731308 CCCGCACC-CC
GCTTTGCATGATCCCTTCATGCCTTCAAAA6733960 CCAGT ACCACC
ACCCCTTGCACCTTACTTAGCTCATTAGTG6754542 G CTGCACCACC
TTACAGCTCACTAGAGTATCAGAGAGTGTC6805081 CCCGCA-CACC
TCACACTTATAAGGAGCTGGACCGATTTTT6873253 CCTGG ACCACC
TTTTAAGATCTATTACCCCCCCCCACCTTC6874518 CCCC CACCACC
TGATGGCACGGGGCACGTAACAGGGCTCTA6877846 CCCT CACCACC
CTATTTTTCTCCAACATCTGTTCCATTCTT6905185 CCAGCT CCACC
GAAAGGGTGATTCCCCACTGCATACACCCA6943365 CCTGC-CCACC
AAGCCCCGTTTCCCAATGTCACACTGTGTA6975527 CCAC CACCACC
AGTCAAACAGTCATCCAGACTATGCTAATA7012251 CCAGCACCAA C
TATCATCGACTTTATAATCTATGTTGCTTG7031013 CCTGCACC-CC
ACAAATTCTCTTAACTACTGAGCTATCTCT7036545 CCAGCACCAA C
ATCTTACTGGCCAGCTAGTCTAGCTCACTG7040413 CCAC CACCACC
CACCTTCTATAGGTTTCATAACCTTCACAG7045694 A CAGCACCACC
TTCTAGCACAGTGGCCGCTCCTCTGCAATA7049459 CCAGCACCAG C
AAACACACACACACGTACACACACACACAT7072197 CCCA CACCACC
AGACTGGCTTCACACTTCCTACCTCAGCCT7077935 CCTG-ACCACC
ACCCTATAGGTGAACAACAATATGAAATAA7127874 CCAGCACCC CC
CATATATTTGTGGGCCCTGAGGCTGGGGGC7135413 CCCGCA-CACC
TATAGTAGAAGCAGCTGACCTCATCTCGCT7137241 CCA-CACCACC
GAAACCAAGACCACTCACCATCATCAGAAC7150578 CCAGCACT ACC
TATCTGCAGCTTAAATCATCATCATCATCA7161625 CCAC CACCACC
ACTTGCTACTACTGGACCCATGTTTTGTTT7187771 CCAGCACCACC
GTCAGTGCTCTTAACCGTTGAGCCACCTCT7188112 CCCGCACCACA
TGCTTCAGTCTGCTGAGTGCTGGGCTTACA7214982 CCTGG ACCACC
TCTCTGCCTCCCAAGTGCTGGGATTAAAGG7227806 CG TGCACCACC
AGTACGCCTACCACAACGAGTCCTGGATAC7251732 CCAGCA-CACC
TGGATTATCTGGATCATCAAAGCACTTTTC7260100 CCAGCACCACC
CTCAAAAGGATCACTGTAGTCCCTGCTGTC7277131 CCTGC-CCACC
TACTTGTTTACCAGTTAGGCACAGCGGAAG7300972 CCAGCACCAT C
TACTTGTTTACCAGTTAGGCACAGCGGAAG7312883 CCAGCACCAT C
ACACTCATTTTCCAGTCCTCCCAGATACAA7397920 CCC-CACCACC
CACAGGTCTCAGACATCAACCCTTCCCCCC7398588 CCCC CACCACC
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/1/CCNGCACCACCen |
db : mm39 |
k : 1 |
strand : CCNGCACCACC |
format : html |
download :
0.006 | 0.006 | search_start;
0.628 | 0.622 | search_plus_done; http://172.18.8.138:28851/match?q=CCNGCACCACC&k=1&no_gap=0&offset=0&limit=200
1.194 | 0.566 | search_minus_done; http://172.18.8.138:28851/match?q=GGTGGTGCNGG&k=1&no_gap=0&offset=0&limit=0
1.194 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.