— Rational design of CRISPR/Cas target.
2025-07-18 10:35:04, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
TCTGAACACAAAGCGGCCACAAGACAGTGG36077823 CCACAGGCGCCCTCT
AAGAGGGCATAATCATGCTTAAAGCCACTG38548277 CCCCAGGCGCCCTCT
GATTTCCCTCTGTCAGAAGTGGTCAATTCT38976047 CCACA-GCGCCCTCG
ATCAGCAAAAGCAGCCTGCTGGCCACAGCT39734588 CA GCAGGCGCCCTCG
AGCGGGTGAGGCGCAATGGGTCTCCCACGC59952360 CCGCC GGCGCCCTCG
GCGGCGGCAACAACGGAGGCAACGGAGGCG59952525 CCTCAGGC-CCCTCG
GTGAGCACTGCACAGTACGAGGGAGGAATA71471500 CCACAGGC-CCCTCG
TCTCATGGACTTGCCCTGCCTCTACTGCTT119474853 CCACAGGCGCCCTCA
ATGGGCAGCTGTGTACCTGCCTTTCAGAAG132235604 CCCCAGG-GCCCTCG
CCAAGCAGCTGTGCGAGTCGAGCCGCAGCT135211518 CCG-AGGCGCCCTCG
TCTGACCTCACTTCACATTGTAAAATGCTT136622912 CCGCAGGCGCCCTCT
CTGTAAATCCTTCAGTGCTTGCTCTGGCAG156441975 CCTCAGGCGT CCTCG
ACAGCTCTCCTGGGTAAAATTTATTATCTA184948739 CCCCAGGCGCCCTA G
GGTCCCACGGTCCCCAGAGGACTCTTCGAG187225566 CCTCAGGCGCCCTA G
CGCGTCGCCCCAGCTGCCAATGCGTCCTCC189076150 CCGCA-GCGCCCTCG
CCATCAGTCACTTCCTCAACCGAGCTGTCT4348970 CCCCAGGC-CCCTCG
TGTCCCACAGACCCCAGAGGACTCTCCATG12916808 CCACAGGCGCCCTA G
AACTGCCTCCTGAGCCTGCACGAGATCACT18786295 CCCCAGGCGCCC-CG
TGCTCTTGCGCCAGGTGCGCTCTGCCAAGT25290969 CCCCAGGCGCCCTCT
GGTTGGATTCTCTGAATAGCTGACGAATGG31328098 CCTCAGGG GCCCTCG
AGAACCCCTGCAATGGTAGTCATGGCTTCC31822745 CCACAGGC-CCCTCG
CCACTTGACAGACTGCAGCAGCAGCCTTCA32069039 CCACAGGCC CCCTCG
AGGTGACAGGTCTTGTGTTCTCTGCTGTCT32269933 CCCCA-GCGCCCTCG
CCCCCACGCCTCGGCGGGAGGCGTCCTGGC38241620 CCGCAGGCGCCCG CG
AGTCCCACGGTACCCAGAGGACACTTCACA41300327 CCGCAGGCGCCCTA G
AGTCCCAAGGTCCCCAGAGGACTCTCCTCA59677407 CCACAGGCGCCCTA G
GCCGTTGCGATGGCAGCGTTTGCGGTGGAT80469258 CCCCAGGCGCCCA CG
GATCGCAAGGACTGCCAGCTTCCATCCACC105507041 CCCCAGG-GCCCTCG
GTGGTTCATCTACGACTCTGTGAAGGTCTA106842050 CT TCAGGCGCCCTCG
ATCACAGAATCCCCTTCTACTCTCCTGCAC129162198 CCCCAGGCGA CCTCG
AGTGTGATAGGAGGAAATGAGCAGCTTCTC156244950 CCCCAGG-GCCCTCG
CATCGAAGGGCGCAGCCGCGTCGTCGGGGC163217882 CCTCA-GCGCCCTCG
TTATGATTGGCTTCAACCTCCATGCCCCGC164256284 CCACAGGA GCCCTCG
GACAGTGTGGGAGAGCTGTGGCAGATCTTT179910544 CCTCAGGCGCCC-CG
GCGGCCGCACGGACACCTGAGGCTGGGGAG51185021 CCGCAGGC CGCCCTCG
GCTCCCCTGCCTTGGCAATGGCTGAGTCCA69926068 CCGCAGGC-CCCTCG
CTGCAGGGCCAGGTGAGCCTCCCCACAGCA80820662 CCCCAGG-GCCCTCG
AGTATCAGAAAATTATTGGATCCAAATCAG145605853 CCGCAGGCGG CCTCG
GCGGGCGCGGGGACCGCCCTGCCTTCGCGT6453868 CCCCAGGCGCCCC CG
GGCGCCTCCCTGCCGGAGCGCGCCGCAGCA45408521 CCACAGG-GCCCTCG
TTATTCATCTCCAAATACCCCTCACATCCT53625663 CCACAGGCGCCCTCT
CGGGTTCTCCTCGCCACTCGCCGCTGGTGG73931864 CCGCAGGCGCCCT-G
CTGAAGGAGACCCCAGCAGCCATCCAAACT129390962 CCTCAGGCA GCCCTCG
CGAGACCCGGTGTCAGTCTCCTTGTGTCCT149022926 CCGCAGGCGCCCTG G
ACCCGGAGACCCTCTTAAATATTCCCCTAA150007887 CCTCAGGCT CCCTCG
GATGGGCCGGGGTGCGTGAGGAGCGGCGGG150939861 CCGCG GGCGCCCTCG
TTGTCTGGGCTGTGTGCACACTCTGAGGTG152084128 CCTCAGGCGCCCTCC
GAAGGGCTAAGATTTGGCCATGAGCAGCGC24632595 CCCCAGGCGCCC-CG
CACTGCAAGCCATTTACCCAAGTTTCATCT44186794 CCCCAGG-GCCCTCG
GATTAACTCAAGTTCTCAGTAATACTCCTG66240383 CCTCAGC CGCCCTCG
AGTCCCACAGACTCTAGAGGACTCTTCACA71105772 CCCCAGGCGCCCTA G
CAGGCACGGGGTACCGGGCAAGGGGCGCAT72294014 CCGCAGGCGCG CCTCG
AGTCCCACGGTCTCCAGAGGACTCTCCACC80505994 CCACAGGCGCCCTA G
GAGCACACTCATCCGTCGGCCGCGGACGGC93090708 CCGCAGGCGCCC-CG
AGTCCCACAGTCTCCTGAGAACCCTCCACT109169674 CCACAGGCGCCCTA G
CAAGCTGACCCGAACCACGCTGTCCTCACG114265958 CCCCAGGCGCCCA TCG
ACGCCCCTGCCCGGCCCCGCGCCCCGCTGA115568180 CCCCG GGCGCCCTCG
CCCACTCCTGCAAATTGTCCTCTGACCTCT117415419 CCACAGGCGCCCTG G
ATGCTAATGACGACACAGCCACCCGGCGGT121951532 CCCCAGGC CGCCCTCG
CGACCCGCCCGCAGCTCCCCGCCTCCCAGG123483314 CCTC-GGCGCCCTCG
TCGGGCCCCCGCCTGTTCCTGCTGCAGCCG135661718 CCTCT GGCGCCCTCG
AAACGCTGCCCCAGGAGCCGCTATGCATGA135996850 CCTCG AGGCGCCCTCG
TGATCAAGATGTGGGGCCGTGTGCCCTTTG137521061 CCCCAGG-GCCCTCG
CCCAAGGAGACAAATGCCCAAGACAGGCAT138963585 CCCCAGGCA CCCTCG
GAAGAACCCAGGTTAGTGCCAGGACCGCTA29757051 CCACAGGC-CCCTCG
CAACCTACCAACCTTGCGCTCCGCCCCGCC34887893 CCGCAGGCGCCC-CG
GAAGCTTTCTAGTGGAATCAAATCTTGGCA46240306 CCACAGGCGCCCT-G
TCCGCTGCCTCACGCCCCGCCATAGGCTGA50574068 CCTCAGGCGCCCTCT
TGGAGGCTCTGATCTGGGTCTTCCCCAAAC72563404 CCCCAGG-GCCCTCG
GGTGCGTAAAATGACCAAGTAGGATCAGTT98045922 CCCCAGGCGCCCTT G
ACCCTGCCTTCTAATTTAGCTCCACCTTGG113260683 CCTCAGGCGCCCTCC
TGAATGCTGTCCTATTCATAGTTTCAAAGG115840175 CCACAGGCGCCCTCT
GGACGCAAAGAGAAAGCAGTAGGAGTGGGT116651060 CCCCAGGG GCCCTCG
CCGGCCCTACAGCACTGGCTCGACTTCCAC120768979 CCACAGGCGCCCA TCG
CCCAGAGTGCCAGCAGATCTCTGGTACCAA121650488 CCCCAGGCT CCCTCG
TCCCTGTCACTAAGGATGAGAAGTCCAACG134250200 CCACAGGCT CCCTCG
TCCAAGGGCTACAAGACCCAGGGCTCGGGC16195837 CCTCAGGCGCCCT-G
GTTGGGCATGGTGGCTCCCAGGCTTGGAAT19307560 CCCC-GGCGCCCTCG
CCTGGCCCAGAAGGGTAGCTGATCAGTGAA37294332 CCCCAGGA GCCCTCG
TATGGGACCAGCAATGCGGAGGCCGCTGCC44146268 CCGCAT GCGCCCTCG
AGGCCCGCCCCGGCGTTTCCGGTCACGTGC46445534 CCTCA-GCGCCCTCG
CTCCGCCACACAGTAGGGCGCCGCCCGGCC62113742 CCGCAGGCGCCCG CG
GGCGGTGACCATGTCTGGAACACCACACTT67111817 CCCCAGGCGCCC-CG
GCGGGTAGGGAGCGTGGTCCCTGCGCGCCA80052795 CCCCAGGC-CCCTCG
ATCATTTGCTGTGGCACATTCTCTACTCTT98129343 CCCCAGGC-CCCTCG
GCCGCCGTCGCACCAATGTACGCGGGGCTC125995614 CCGCAGGC-CCCTCG
ACTCACCCCCTGTTTGCGCTCATCACTGGC128401216 CCACAGGCC CCCTCG
GGTAACCGGGCCTGGGTTGGGGGCGCCGCG132533304 CCGCAGGC-CCCTCG
CGCTGGCCTTACGCCCGCGCCAATGGGCGT142213325 CCGCAGG-GCCCTCG
GGACTCGGTGTGTGCACCATAAAGTATCTA144227725 CCACAGGC-CCCTCG
TGACATTTCCCCACCAGCAATTAGCCCCCA12559295 T CACAGGCGCCCTCG
CCCACCCACTTCCGCACTGCTGACCACGCC26648129 CCACAGGCGCG CCTCG
TCCGCCCGGCGCCCCTTCCCGCTCCCCGCC80366084 CCTCAGGCGCCCTCC
TAAACCCTTAAAGAGAACTGACTCTCCTTT83735254 CCCCAGGCGCCA TCG
CACAAGAACAAGCCAACAGTGGTGCAGTTA84745160 CCCCAGGCC CCCTCG
TGAGTGACTGTCCTGCTGCTCAGCCCGCCC85652019 CCTCAGGC-CCCTCG
TGACGCTAGGTCCCCAGTGTTCCTGCTCTG89423875 CCTCAGGCGCCCT-G
GGGGTGCAGCATCCACAGCACATCCTGGGG111615825 CCCCAGG-GCCCTCG
ATCATGATACTTAAAAACAGAGAGCTGGTT114375950 CCCCAGGCGCCCT-G
AGATGCACCATTTCCAAAGTTATCTGCGTA126758815 CCTCAGGCA CCCTCG
TACATGGCACTTGTGTTAGCTCCCTAATCT14302871 CCACAGG-GCCCTCG
ACTTTCCATTGGACAGCCATTGTTGTGCAA15573209 CCTCAGGC-CCCTCG
CCTCCCCTGCAGTACCATCATCTCAAGGGA26981189 CCACAGA CGCCCTCG
CTTGTGGCTCCGCGTGGCGGGGGAGGGGAG40712832 CCACAGGCGCCCTG G
ATGCTCCTCACTCTACCTCTGATCAGAGCT41932807 CCCCAGGCGCCCTCG
TCCGCTCGCCTGGGGCGGCCCAGGAGCTGT100525386 CCACA-GCGCCCTCG
CCCGGAGTGCATCCCGATCCGGTAAGTTGT106034443 CCTC-GGCGCCCTCG
AGAACCCCTGCACAGGAGCGGTGAAGGTGA106101282 CCCCAGGCGCCCTCC
CACCACATGGCCGCCAGCATCACCAACCAG40017833 CCCCAGC CGCCCTCG
ACCTCAGCAGCAAAGGCAGAGGCAGCCTGG74961000 CCTCAGGCGCCCTG G
GGCTCTTTTCTCCAAGGGGTTCCGGCCCTG78132359 CCCCAGGCT CCCTCG
CTCCTTAAAGGCCTCATTGATGTCGCGGAC80248800 CCGCAGGCGCT CTCG
TTTCCAGAGTCAAACTTATCCTCTACAAGT111102271 CCCCAGGCGG CCTCG
CTCCTCACGCCTGTAACTCCAGCTCCCGGG115176563 A CTCAGGCGCCCTCG
ACCACGGCTGCCATGGCTGAGTAGTTCCCA5152011 CCGCAGGCGCCCA CG
GGTCCCAAGGTCCCCAGAGGATTCTCCATA17825631 CCACAGGCGCCCTA G
CAATGGTTTCAGGTACCCAGAGGACTCTCC26785402 A CACAGGCGCCCTCG
GATGGTGACTTTGCCTTTGATCTGTTCCTT35930582 CCTCAGGCGCCA CTCG
GAGCGGTGCTTGTATTTGGCCTCTTGTCCT50047566 CCTCAGGA GCCCTCG
CTTCCCTGAGAACTGGGCCTCTTCAGTTGG51458553 CCCCAGGCT CCCTCG
GTCAAAAATGAACCTCAAGGTGATCTCTGC72020494 CCTCAGGC-CCCTCG
AGGGGAGACGGCGCTAGTGGGGAGAGCCAC79230575 CCACAGGCGCCCTCC
CCAAGAGCCCTGTGGACCATCCCTATCTGG84488799 CCCCAGGCGCCCT-G
GAGCTTTGTTGTGGAGCCTCGGCCGCCTGG85721051 CG CCAGGCGCCCTCG
TGGTGCTCAGCCTGAGAACCTGTGTTAGAC94479302 CCCCAGG-GCCCTCG
CAGCCACATGGAGACCTCTGTGCACCAAAG96740449 CCACAGGCGCCCTA G
CCCTACTAACCGGAGGCTTTACCTCTCCTC108195267 CCACAGGCG-CCTCG
TCCAAGAGATCCAACACCCTCTTGTGTTTT116975620 CCACAGGCGCG CTCG
GGCAATTCCTTCTCTGAAGCCCTCGCAGCC3885154 CCACA-GCGCCCTCG
AGCGCCCGGGCCGCGTCCTCCTCTACGTCG49432577 CCGCAGGCC CCCTCG
TTCTACCTGGAAACTCTGCCTGTCCCAACC49479915 CCACAGG-GCCCTCG
GCGGCCCGCCGCAGCCCCGGCGCCCCGCAA55539006 CCCC-GGCGCCCTCG
CCGCAGCGTGTCCCACGAGCTCTGCAGATG76653182 CCCCAGGCGCT CCTCG
CGGCCCCCTCCTTCCCGCTCGCCTCGCGCT78273441 CCCCG GGCGCCCTCG
GAGCGCTAGCTTCTGTGGGCTGGGCTGTTG104007716 CCACAGGCGCCCTG G
CGGTGTCAGACTGTTCGCCAGCTCCCGCTG106057947 CCCCAGT CGCCCTCG
GCAGCGCACATGCCTGCACAGCCTACCGGG112892172 CCGCAGGCG-CCTCG
TCCCCAGAGGATTCTCCACGACTCTCCAAG4141442 CCACAGGCGCCCTA G
CTGCCATCTGCTGGAGGTCAGCTCTCATGT6740212 CCTCAGG-GCCCTCG
ACATTCCACCCACTGTGACTCAATAGAAAC38617880 CCCCAGGC-CCCTCG
GGCCCTATGGTCTCCAGAGGACTCTCCATG84073974 CCCCAGGCGCCCTA G
CGCCCGTCCGCAGCTGCAGAACCCCAGGCC114524325 CCGCAGGCG-CCTCG
TACCCTTGCCAAGCAAGTGCATAAATGACC10491751 CCACAGGC-CCCTCG
AGTCCCACTGTCCCCAGAGGATTCTCTACC13496021 CCCCAGGCGCCCTT G
GAATGCATGGGCTGGAGGAGACGATGCATG46433772 CCAG AGGCGCCCTCG
CACCCCACCCCACCCCCGCCCCCACCCGCA47341956 CCCCAGGCGCCCT-G
CGACGGACAGTCCTCAGAGGACTCTCCATG50545713 CCGCAGGCT CCCTCG
AGGATTTAGGAGAGTGCAATCGCCCGAGAC79746715 CCCCAGGCA GCCCTCG
TTGCCTCGACTGGAACAATCCTGCAGTTAT120679621 CCCCAGGCGCCCT-G
CGGGCGCCGGCGCGGGCTCGGGCTGCTCCT25364707 CCGC-GGCGCCCTCG
CCGCGATGTCGGCTAGGTCCTTGGCGGCCT28025471 CCTC-GGCGCCCTCG
GGTCCCAAGGTCCCCAGAGAACTCCCCACG44253398 CCACAGGCGCCCTA G
TATTTCGGAAGCTTGTACAGTACCGGGTTT100891280 CCACAGGG GCCCTCG
CCTTGTGGAGGAACTCCAGGCATTCTGGAT103262298 CCCCAGGCGCCCT-G
TCTGCAGCAGAGACGTGGCCCCCTCGTGGT5073788 CCTCAGGCGCCA TCG
GGTGCTGCCAGCCGTGGCTTACCACAGGGT23892059 CCTCAGGCGCCCT-G
ACCTCTCTTCCTAAGCCCTCTCTCCCATAA26858173 CCCCAGGCGCCC-CG
ACAGTGGTGGGAGGGGATCGTCCCAGGGAG57575664 CCCCAGGCGCCCT-G
GGCTGCCAACACGTTTCCTTGTCTCCTGTC7015225 CCACAGGC-CCCTCG
CCCGCGCTGCTCCCAGGAACTTGTCCTCTC23783078 CCGCAGGCG-CCTCG
GCGCGGGTGTCCCGGGTCTCCGCGTACAGT26634269 CCACAGGCGCCCC CG
TTCACTCTGGTTGTAGTAGCGCTGCGCGGT36456314 CCTCAGGCT CCCTCG
ATATTAATGATGACACAGCCACCCGGTGGT40729633 CCCCAGGC CGCCCTCG
ACTGGGAACACTCAGAAATACACACAGCCA50951948 CCCCAGGCGCCCT-G
CATTCTCGGAAAAGCAGGGCATTTCCAGAG53785715 CCACAGGA GCCCTCG
GATCCCACGGTCTCCAGAGGACTCTCCACA56161626 CCGCAGGCGCCCTA G
AGTGCTGTGCTTTGGTATATAACCAGGGTA57189650 CCACAGG-GCCCTCG
ACAGGAAGGGTGACAGGCTTCCAGTGGTCA66096722 CCTCAGGCGCCCTCC
GTACACCCTAAGCTCCCACATAAATCTTTA80467131 CCCCAGGCA CCCTCG
AGGCCCACGGTCCCCAAAGGACTCTCGACA7390267 CCACAGGCGCCCTA G
AGTCCCACGGTCCCCAGAGGAATGTCCATG10084852 CCACAGGCGCCCTA G
CCGAGCGTCGGGCGGCGATGGAGCCCGGGC58011892 CCGC-GGCGCCCTCG
CATTGAAAAATACTCAGGGCAAGCAATTTA58329667 CCGCAGGCGCCCT-G
TGCTGGCCGGCACAGTCGATCCTGCTGCCT60756825 CCACAGGCGCCCA CG
CAACCCAGCCCAAAGCTCAGAGCACCCCAG61537355 CCCCAGGCG-CCTCG
AGGCAGAGGCTAGGAGGCGCACGTCCCAAG76294061 CCCC-GGCGCCCTCG
TGCTAAGCCCCTGAGTATTTCTGCTCAAGT81648553 CCTCAGGCGCCCTCA
CAGCCTCCAGGACTTTAGGTGAGCTGAGCG7682741 CCACAGGG GCCCTCG
TGGGTTCCTCCTCTGTGCCAAGGCCACAGC10842834 CCCCAGG-GCCCTCG
TCCTGGGCTCCAATCCTTTGAGGATACTTT24077999 CCACA-GCGCCCTCG
AGCCGTTGTGCAGCAGCCCGTTCACGGCGG34856110 CCGC-GGCGCCCTCG
AGGTCCCAAATCCCCAGAGGACTCTCCACA40196245 CCGCAGGCGCCCTA G
CCCCCCCCCCAGCTCAACCAGGTACCGACC48193782 CCCCAGGCGCCCTCC
TATCCCGCGATCCCCAGAGGACTCTCCACA14782768 CCTCAGGCGCCCTA G
ACTAAGATGGTCCCAAGAGGACTTTCCATG75812812 CCACAGGCGCCCT-G
CTGAGTACTGCCACCTGGAATCTTCAGGAC92751334 CCTCAGG-GCCCTCG
AGTCCCAAGTTCCCCAGAGGACTCTCCATG106226959 CCACAGGCGCCCTA G
GGTGCCAAGAGATGCACAGGATGCTTTAGT135568804 CCCCAGGG GCCCTCG
GTGCTTATGGAGCGACTACTCAGCCAGGGC4422678 CGAGGGCGCCTGCGG
TATCACAGGACAAGTAGAAGGAGGTGAAGA30833890 CGAGGGCG GCCTGTGG
TGCGAGGGGTGGGGCACAAGGCGGGAGGCG46128119 CGAGGG-GCCTGAGG
CCTGAGGCGGGAGGCGCGAGGCGGGAGGCG46128156 CGAGGG-GCCTGAGG
CGGGAGGCGGGAGGCGCGAGGCGGGAGGCG46128289 CGAGGG-GCCTGAGG
CATGGCCGGGTAGCCCGGGAGAGCAGCGGG74990401 CGAGGGCGCCTGGT G
CTCACCAGTGATCCTAAGACCATGGGCATT107946570 CT AGGGCGCCTGTGG
AAGGCCCCTGCCTCCCCAGAGCTGATCAGG132120100 A GAGGGCGCCTGGGG
GACAATCAAGCAAGTTGGGAGAAAACAGCA170557259 CGAGGGC-CCTGAGG
TAGCTCTATGCAGTACTTGAAGAGGCCAGA180602418 A GAGGGCGCCTGAGG
AAGATGGGGAGTTCTGGTAAGAAGCTGCGC182431301 CGAGGGC-CCTGTGG
TTCACTTGTGAATAACAGCTCTTCCCATCC26450406 CGAGGGA GCCTGTGG
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/1/CCNCAGGCGCCCTCGen |
db : mm39 |
k : 1 |
strand : CCNCAGGCGCCCTCG |
format : html |
download :
0.007 | 0.007 | search_start;
0.081 | 0.075 | search_plus_done; http://172.18.8.138:28851/match?q=CCNCAGGCGCCCTCG&k=1&no_gap=0&offset=0&limit=200
0.114 | 0.032 | search_minus_done; http://172.18.8.138:28851/match?q=CGAGGGCGCCTGNGG&k=1&no_gap=0&offset=0&limit=12
0.115 | 0.002 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.