— Rational design of CRISPR/Cas target.
2025-06-15 04:23:56, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
ATCTGGTTAGGATGAGATTTCTTTGCGGAA3656781 CCAACAT TGTGACAT
TTGGTCCAGTGACACCTTCATATCCATACA4240520 CCCACAATGTGACAT
AAACACAAGAAGCACTTTTTGCACATTTTT6521379 CCTT CAATGTGACAT
GGGTAAAGTATCTGGTGATAGAGTTGGTGG19772959 CCAACAATGTGA-AT
CATGCAAGCAAACCCATGACTGTTATTATA22274260 CCAACAATGTGAC CAT
AAGCCCTTTGTAGTCTATCACCATCCTTTC26939365 CCTACAA-GTGACAT
TGCTGAGGGTAAGTAACAGTTGAGACTCAG36014910 CCAACAATGG GACAT
AGAGAGATTACTGATCGCTGATCAGGAGGC36504732 CCTACAAG GTGACAT
CTGACAGGTTTTTGTGGAAGACACATAGTT37588880 CCTACAATGTC ACAT
AGCTTAACTGAACAAGCCAGGCCCTACCTT38626205 CCGACAA-GTGACAT
GAACCTTAGGGAGGAGTGTTCTGGTCATAC39002918 CA GACAATGTGACAT
TCATCCAGGACCTGCCCCTCTCTGTCTTTC39327026 CCCA-AATGTGACAT
CATATGTTAAGTCGTTCAGTAGGGTGGCTG40092262 CCCACAATGTGT ACAT
GATTTGCTGAGTAGATAAGAGCCTATAGGC45954694 CCTACAATGTGACAC
AGGATTATTCTTGAGTTATGGTGAGAAGTT47049391 CCAACAATGG GACAT
CACACTCATGCCTTCCCACGCTGGCATTCA48408825 CCTACAATGG GACAT
ATTTACTCACTGTACCAGCCTATTATCAGG48592440 CCAACAATGTGT CAT
TCATGTCCTCTGGTCTCATTGAGGCTTCAT57222489 CCC-CAATGTGACAT
AGACAGAACTTTGTCTTGTCACCACTGTGT62659747 CCT-CAATGTGACAT
CCTCTAAGATTTTATAGGGTAGAAGCTTGG76315297 CCCACAATGTG-CAT
TGGCGTAACACCCAGTGGATACAACAATGG82058064 CCAACAATGTGACT T
CCTCTTAGTGTCAGTAGTCCATAATATGGC83018741 CCTACAATGTG-CAT
AGCTTCCCTGATCTGTGGTAGCTGGCCGAT85854496 CCAACAAT-TGACAT
CTCCGTGCACAGCCCAGTAACTCCCGTATA89425778 CCCACAA-GTGACAT
CATGCTAGTTTGACATTCCCAGGGGGTCTT90848760 T CTACAATGTGACAT
GAGGCATTTACATCCCAGCTCTCCAGGTTC92619695 CCAACAATG-GACAT
TGGCAGGCTAGAGTAGTGGCCCTGTGTCCA93594966 CCCACAT TGTGACAT
TGTGGAAGTCAGAGCACTATTGAGTTTCAG100074266 CCCACAATGTGACAT
AATATAAAATCAAATAAAAAAAGTACAATA100691202 CCAACAAT-TGACAT
CTCTGCTTCCCTAATGCTAGAATTATAAGT102309080 G CCACAATGTGACAT
TTGGTGACAGTATATCTGGTTTCTCAGTAT105228891 A CTACAATGTGACAT
CTTCCCTCCTTGAGGCAATGTCTTTACTGA107524055 CCT-CAATGTGACAT
CTCTTTATGCCCCACATTTAGTTTTTCTTT107570258 CCAAG AATGTGACAT
TCTTTCCTGATCAGAGCATCAGAAGCACCC108267968 CCTAC-ATGTGACAT
AAAACGCATCTCATATAACAATTTTCACGG108946642 CCCA-AATGTGACAT
GAACACTCAATATATGCTATCCAAAAATTG109658304 CCCACAATT TGACAT
CTTGTGTTCCAAAATCCATTAGCTCTTTGT112712940 CCT-CAATGTGACAT
TCAAAAAAAAAAAAAAATGCCACACCCACT113515757 CCAACAAA GTGACAT
ATGGAAAGGTGATGACTTCACCTTAAATAC116684628 CCAACAAA GTGACAT
ACATTTCACTACAGTAACAACATGACTAAA119800694 CCAACAATGTA ACAT
TTGACATCAAAGGATGTATTCTTACCTCTA122150457 CA CACAATGTGACAT
ACCCACACCCACCTCACTGCTCTCAGTTCC122920833 CCTACAC TGTGACAT
TGAGAATAAAAGGACTGTTGAGGTTTTAGC124167410 CCTA-AATGTGACAT
AAGAAACAGAAAATCCAAAGGCCCTGAAAT124636964 CCAAT CAATGTGACAT
GTGATGATGACAGCAACAATTTACAATCCA126790433 CCTACAC TGTGACAT
CTACTTATCTCTCTGTTTGCACCAAGCACT128496649 CCC-CAATGTGACAT
ATAGGCAGAGAGGAGTGGGCACCTTCAGCA132091214 CCTACAATGTGACAG
CAGGCGTCTGCCCCACCACGTAGCGAGAGC132529832 CCCACAC TGTGACAT
TTGAGTGTTTTTTGCAGTGCTTCCTGGACC135221343 CCAACAATGTGA-AT
TTTGTGTGTTCTCTCATTACTTCTCTTCAG137895736 CCCACAATT TGACAT
CCCAGAGTCTCATCAAAGAGAACATTGACA137985964 CCCACAAT-TGACAT
TACACAGACACATAGAGACTTGATTTCTTT143908889 CCT-CAATGTGACAT
ACTTCAGTTTTCTCTACAATTTATTGCCCT146503222 CA GACAATGTGACAT
ATGTATACATAATTATATTATGCCTGCAAT147521524 CCTAA AATGTGACAT
TTTAGCAGCAGATGAAAATGGGTGCACAAA147870602 CCCACAATGA GACAT
AAAACTAGGAGAAGGCTATCAAAGTCCCAC148235752 CCCACAATGTC ACAT
AAAAGACGAGGTGGGGGTAGTGAAGAAAAC149940745 CT AACAATGTGACAT
AACTCTGGTGGTGGGATTCATTGGGCTGTC151574338 CCAAA AATGTGACAT
TGGCAGAATCACAGAGACTAATAGAAATAC152700645 CCCACAATGA GACAT
ATGGTTTATTTGTCAATTTCCTGAGTAGTG156468463 CCAAC-ATGTGACAT
ATTTTGTAATAAAATGTTTTCAAGTGATTT156737600 CCTACAC TGTGACAT
TTCAGAGAACAAATGTCTGTGGAGGGCTCA159944744 CCCACA AATGTGACAT
ACAGATAAAAACAAACTAGACAAACTCAGA161128342 CCAACAATGTGC CAT
ACCCCAGTGTTTCTGAAGGCCTCTTGTGTA164119266 CCCACAATGTGAC CAT
ACACTCTCAACATACGTAGTAATGAACTTC166759617 CT AACAATGTGACAT
TATTCCAGGTCCAGGTCTTTTGTCACTTGA168005663 CCTAC-ATGTGACAT
AGTAATGGAAACAAGGACTCACTATGATGT168164464 CCTACAG ATGTGACAT
ATGCAATAAGCAATAGATGTTTATTGTTTG168752550 CCAACAATGTGAT AT
CTGACATTATGCGTATGGGGGTAGGTTATC170922995 CCAACAATG-GACAT
CTGCTTCAAACTGCAACAGTTCCCATGTGG175536711 CCAAC-ATGTGACAT
ACATGTATCATTAACTGCTTTCATTTTTTT182175421 CCCA-AATGTGACAT
ACTTCACGCCATCCTGACCCCAAACACATT183641797 CCAAC-ATGTGACAT
TTTTCGGCGAGGCAGGCATCTTAATTTCTC184503710 CCAAG AATGTGACAT
ATCCTATTATATTTTAAAGATAGATAAATG188991563 CCAA-AATGTGACAT
TGCCTTTTCTTTGAAAAGTTCTCAAGCTTT189256697 CCCACAC ATGTGACAT
GACGGCAAAGCCAGACATCAGTAAGGAAAA189945751 CCCACAG ATGTGACAT
TTCTTCTGACACTGGCTTTTTGGAACCAAC192030196 CCCACAATGTGACAT
TTACATAGGTTTTCAAAAATGTCAGAAATC3695689 CA CACAATGTGACAT
CTTGTGAAGCTATATCAGCAGGTGTTTTAG3792144 CCAA-AATGTGACAT
AATGGCGGATACATGGCCTTGGTCCCCATA5487724 CCCACAATGTG-CAT
CTCAGATAATCAACACAGAGATTCTCAAGT10333307 CCTACAG ATGTGACAT
AGGTCTATAGACTCTTGCTATTGATCAAAA11722720 A CAACAATGTGACAT
CACGGCACTATTAGTAGCTTGTACTTGGTC12347404 CA GACAATGTGACAT
ATTGTTTGTACCTTCAGGAAATGCTTGAGC14431975 CCAACAATGT-ACAT
AAAAATGAAAGGACTCAAATGCTAATTTTA15279013 CT AACAATGTGACAT
TTCAATTTTCCCATTTCAATTCTTAATATA16346944 CCAACAATGTGT CAT
AAGCTGATCCCCAGGGTCAGGCAGTGTGTC17177835 CCAACAATGTGT ACAT
TTAGAAAGAGACACTTCCATGTTTTCTTTT19463604 CCAACAATGTG-CAT
ACCATGCAATTTTGCAAGCAAACATTAAAT21874063 CCAACT ATGTGACAT
TCTTGGATGAACTGTAGGAAAAAAAAAGAC22110595 CCTACAATGTGA-AT
TGGTAAAGTACTACTCCAGTTTTCCTTTAA22700899 CCAACAATGTGAT AT
CCCACTCCCACCTCATTGCTCTAGAATCAC23199472 CCTACAATGG GACAT
GAAGCCCATTGCCTCAGTGACACACTCCCT23885018 CCAACAATGTC ACAT
GCCTGTGAACCAGTCAGCAGGTGCCTTGGC31487150 CCAAC-ATGTGACAT
TCTGGATAGTACAATTGAAGCTTTAAGAGC33962880 CCAACAATGTGG CAT
TGTTTATCAATGTCACTGCATGAACCTTGC40816008 CCTACAATGTGACC T
TCAGTCTAGATATTTTTTGTTGTTGTTGTT41325146 CCCAG AATGTGACAT
TATGAAGATAGAGTCATGAAAAAGTAGTCA47096969 CCCACAAA GTGACAT
CAAGTTACTGCAGCCAATTTTGGATCATTT47762954 CCAACAATGTGACT T
TGACTGCTGTGTGATGTGCTGAAATCGCCT50781047 CCTA-AATGTGACAT
TAACCGACTCCATAATGTCTTTTGGCCACA51493367 CCCACAC TGTGACAT
GTCTTACTCATGCAGAGGAGATAGTCACCT52828410 CCTACAC TGTGACAT
ATAACAATCTTGTATAATTTACTGTTTTCC53096239 CCCACAATGTC ACAT
CTCACTCCCACCTTCCCACCTTGACATTCT54662343 CCTACAATGG GACAT
AAAAATCTATGTAAATCCTAATTCCAGCAC66322434 CCCAG AATGTGACAT
CATAATACTAATATTTCTGATTGTTTTTAG66697449 CCTA-AATGTGACAT
TCTAGCAGAACATAGACCATCAGCTTGAAA68571585 CCCACAATT TGACAT
TATTTTCAGGAGACAGTCTATGGTAAATAA75271887 CCAACAATGTGACAA
GGCAACTTGGTTCCTCTAAATCAGATGAGA76980185 CCCACAAC TGTGACAT
TCCTAGCATGCATGAAGCTTTGGGTTCTGC78568066 CCTT CAATGTGACAT
CTATTTCCTGAAAACCACTAATCCTTATCT79015390 CCAA-AATGTGACAT
CCTTTTATTCAAAGTGCATTCTGCAGCTCA80474271 CCAACAT TGTGACAT
TCTGTTCAATGACACTGTTACAGGGAACTT83521125 CCTACAAT-TGACAT
GTTTAATTTGAAACAATTTATAGCTCACAG85750159 CCAACAATA TGACAT
TGAAAAAATAAATAAGAGAAAATAAAGAAA87477646 CCTACAATGT-ACAT
CAGATGACCCAGTGTAAGGTCAGAGACTCA94658847 CCTACAT ATGTGACAT
GCAGAGAGTAAATATCTGTGGAATACTCAG95133064 CCAC CAATGTGACAT
ATTTCAATTAATTTCAGTGACTTTAAATAA98294608 CCAACAATGT-ACAT
CCCACTCCCACTTCCTGGCCCTAGCATTCC102545478 CCTACAC TGTGACAT
AACGGGAGTAATAAGGTTTCAATTCCCTGT108505925 CCTAA AATGTGACAT
CCTATTGTGACCTCCAGTTCTGCCCATTTT114127542 CCAACAA-GTGACAT
GACTCTGGCCTCTCTGACCCTGGAATTTAT118916648 CCCACAT TGTGACAT
AGGAGGAGGCCATAAATGCCCCCACAACTA124589448 CCAA-AATGTGACAT
GGGCAGCCACAGCTGGGGTTCCCTTCCCAA127302517 CCCACC ATGTGACAT
AAGCTAATTTGGAGTTCCTGATTTGACTTT127492938 CCCACAATGA TGACAT
TTAGACAAGAAAGAAGAAAAGCAAGCACTA127938140 CCTAC-ATGTGACAT
GTAGAGTAGAAATGTTTCTCATCTGGACTC128749846 CCAACAATGTGAG AT
AAGACATTGATCTCTAGGCGGATCCATTTT129183528 CCAACAA-GTGACAT
ATTTTAAAAGATGTATTTAAAGATTCAACA132308473 CCTACAATGTG-CAT
TTGTTTGTATGTTTTGCCTCAGCACATATA138869295 CCTAC-ATGTGACAT
TGTCTAGAAAAACAGGAAATAAAATTGCTG142913968 CCTG CAATGTGACAT
CTGGTTTCCCCATAGAGCCATGCTTCTACT143323934 CCAACAAT-TGACAT
AGGTAAGCCTCCACCATAGTATGGGTCACC147954401 CCTACAATGTGA-AT
AAATGTCACACCTTGCTTGGTGTAGCCACT156023109 CCAACAATGTGACC T
CCCCGCAGATCCCAGAGGCCACACTGAGGC158845316 CCCACAATGTGACAT
AAGAGTGAGAAATACAGTATTGGGGGCCAT160018414 CCC-CAATGTGACAT
TGATGGTGCCTTGACCTTCCCTAATATATC160372204 CCCACAAG GTGACAT
AAAGGCAAACTTTTCTCTCTGTTTTCCTGG162167594 CCAACAATGTGAC-T
AAGCATGCACAGTCCCCACCCGGCACCACA167063628 CCCACAATGTG-CAT
ATGGCCAGCAGTGTCAAGGCCACTGCTCTG168097797 CCAACAC ATGTGACAT
AAGCGGCCTGGAGCCGTGCTTTCTCTCAGT170183383 CCCACAATGTC ACAT
AGAGAAGTTTGAAAGTGTGACCTACTCCTC171995892 CCCG CAATGTGACAT
CCTGGGATTTCAGCCAGCTCTCTGTGAACC178946324 CCCAT AATGTGACAT
GGGACACCAACTTAGCCACAAACCCTTCAA180759414 CCCACAATT TGACAT
GTATTTTAGTTTTTTCGCCATTTTCCAGGT3009237 CCAACAATGTG-CAT
CTTTTTCAGTTTTTTCACCAAAATCCACGT3009825 CCAACAATGTG-CAT
TGCAGTTAGTATGCATGGCAGATATGTTAG9131006 CCTAA AATGTGACAT
AGGCTATGTGGATAGCCTCCAGTACAGAGG11310921 CCTACAA-GTGACAT
CCAGACCGTTTTACTAGACAACTGCCCTAT13874841 CCTACAATGTGAC-T
GAACCCGGACATGAGAGCCGCAGGCCAGCC14320222 CCAACAG TGTGACAT
GCTTTAAATGTCAGGAAATAGCTCAGAGTT16588066 CCAACAATGTGA-AT
ATCTCAATAATAGAAACCATAACTAAGACA17768587 CCAACAATG-GACAT
CCTCAGGCTTGTGGTCTGAATTCTTTTTAC17900005 CCAAC-ATGTGACAT
GGTCTAACACATTTCTGGGTTTACCAAAAC18128323 CCTACAATGTGA-AT
CACCATGGCACGGGTGGCCCGTGTAGCTTC19167951 CCAACAT TGTGACAT
CAATGTTCCATGAGCTATATAGACAGTGGA20524061 CCTACAATGT-ACAT
AGAGGGGACACTGAAGCCTGGCTGGTAATC21756864 CCAACAATGTGAT AT
CATGTGAAAGGTAGGAACATAGGAAAATAC23177588 CCTACAATA TGACAT
GGATGTTCCCTATAGTGAATACTAAGGTGG23201605 CCAACAATGT-ACAT
TATATATATATATATATTTATATTTAGATG23320219 CCTACAATGTGA-AT
ACCATACATACACAACACATATACCACACA26539007 CCCACAATGT-ACAT
CACAATTCCTCCAACAAGGCCACACCTATT27965136 CCAACAATGTC ACAT
TGAGGGGGTAGGAGGATGGGACTCCGTTAT29902682 CCTACAATGTG-CAT
ATCTTTTATATTTAACTTTTAAATCTCTGA31094023 CA TACAATGTGACAT
AATAGTTGGTTTTCAAAAATTTCAGAAATC31771181 CCCAG AATGTGACAT
CACTTAAACTACATGCTTCATCATGGGTCA35937465 CA AACAATGTGACAT
AGTGGGCTCTTGACACCACGGAAATTGTGA37875567 CCAACAATGTA ACAT
GTTGAGCATCAAGGTCCATGGCTCACCGCT40584391 CCTACAG ATGTGACAT
AAGGACAGTGTATGGAATGGGAACAGAGGA42320311 CCCACAAC GTGACAT
AGCCAACGTTAGCACTGCTGTCCCACTTGG42866713 CCAACAATGA GACAT
ATACAGTAGAAGATTGATTTATGTTAATTT47976937 CCTACAATGT-ACAT
GTCCAGTTCAGAACCTCATAACTCGTCCTT50954857 CCCACAA-GTGACAT
CTGCCACGTCTTAAATCTCAGCTCTAGTTT54583891 CCAAC-ATGTGACAT
ATTTTTCAGTTTTTTCACCATATTCCAGGT56483078 CCTACAATGTG-CAT
AGTAGATGAATGGTGCTAGTAACATTTGTG56989713 CCAA-AATGTGACAT
GAGGACCCAATATACAAGACTTCCCAAGTG56996276 CCAACAATGTGT CAT
GCTATGGCTCCAGTCAGACACAGCTTATTT61029435 CCAACAATGTGAT AT
ACCACGAGGAAGATTTTAGTATTAAAAAAT61429932 CCAACAATGTG-CAT
GATTTTAGTCATAACCACCTTTAACCCTCT62722887 CCTACAATGTGT CAT
ATATACCACCCCTACATTAAGACAATTTCT64405902 CCAACAATGTGACAC
ATATACCACCCCTACATTAAGACAATTTCT64553842 CCAACAATGTGACAC
TGTAAACCATAGACCAGGATCTCTATAAAT64909775 CCT-CAATGTGACAT
GGATTAAAAGACAATGTGTCTTTCAGTCCT65087731 CCAACAATGA TGACAT
TCAAACTGATCCTTCAAGGGACTCAGTTAG65762579 CCAACAG ATGTGACAT
CGTGTTTCTAGAGACACTCCACTTTAAATG67355715 CCGACAATGTGAA AT
GCGTTTGTGCCACTTTCCCAAGCCCTGGTT69901378 CCTACAG TGTGACAT
TCTCTAACAAACCTGGCGATTTAATCTAAC73818587 CCAACAATGTGAT AT
AACTATACAATTCTACTTCAAACTGAGACT76231219 CT GACAATGTGACAT
GAGACATATTATGGTAAAAAGATGAATTTA78196426 CCAACAATGTT ACAT
TTGCCACAAAGGGAGGCTGTAAAAGGAACT81403782 CCCACAAA GTGACAT
TCATGGCCTGCTTGCTCCCAGGAGAGAATC82992594 CCCACAATGTGAC CAT
TCAAGAAAGACTACGACCAAAGCTTACCCA83707146 CCAACAATGTGAA AT
CACTCTTTTGGCTTCCAAGGATAACCCCTG84765836 CCCACAATGTG-CAT
AACACCCAGTGTCTTGTGGTCATACAAAAA86938927 CCAAG AATGTGACAT
TCATGCTCACTCATTCCCTTCTCCTAACTC91493270 CCTACAATGTGACT T
TCATGCTCACTCATTCCCTTCTCCAACCTC91539427 CCTACAATGTGACT T
TCATGCTAACTCATTCCCTTCTCCAACCTC91649353 CCTACAATGTGACT T
TCATGCTCACTCATTCCCTTCTTCTACTTC91715341 CCTACAATGTGACT T
CCGTGCTCACACATTCCCTTCTTTAACCTC91762960 CCTACAATGTGACT T
TCATGCTCACTCATTCCCTTCTTCTACTTC91782678 CCTACAATGTGACT T
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/1/CCNACAATGTGACATen |
db : mm39 |
k : 1 |
strand : CCNACAATGTGACAT |
format : html |
download :
0.006 | 0.006 | search_start;
0.081 | 0.075 | search_plus_done; http://172.18.8.138:28851/match?q=CCNACAATGTGACAT&k=1&no_gap=0&offset=0&limit=200
0.114 | 0.033 | search_minus_done; http://172.18.8.138:28851/match?q=ATGTCACATTGTNGG&k=1&no_gap=0&offset=0&limit=0
0.114 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.