— Rational design of CRISPR/Cas target.
2025-06-21 21:40:28, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
ACAGGAATTCGAAGGCTCTGTAGCTGCTTC10109255 ACCTGG ACCCCGGGG
GCTTCCTGGAGTGGAAGGACCAAGAGGACC24276286 ACCTGG ACCCCGGGG
CTGGTCCCTGCCATGGACTCTGCTTCCCCT24559047 ACCTGAACCG CGTGG
CTGTATCTCTGCTTTCTCTTCGGCATTAGT25357751 ACCTGAG CCCCGAGG
GACATTTTCTTGCTGGGTTGGCAAGTGCAG58342743 ACCTGAAG CCCGAGG
GGCCATCTTCTGATACATATGCAGCTAGAG81779398 ACG TGAACCCCGGGG
TCAACCAACAGTGACCAACACTGTCAACTA94691855 ACCTGAACCCCT GGG
ACTGCACACAAAGACCAGCAGTGTCAACTA115927026 ACCTGAACCCCT GGG
CCCCAAATCCTTCATCCCTTCTTTCCAGGT157382425 AA CTGAACCCCGAGG
TTTAGATCGTCGGCACCCATGTTAAAGTGC181584437 ACCTGAACCCCA GGG
GGTCTGTTTACTTGAATTTGTTGCCACTGT182630576 ACT TGAACCCCGTGG
CTTTTACCATCTCTACAAAAGTCTCTGCAT186625501 ACCTG GAACCCCGGGG
GAGGGAGAGTCCTGGGTCAGAGGAGACCCA25055214 ACCTGAAG CCCGAGG
GTCTGTGAATTCCTTACGTCTTTGTTCTTA28072801 ACCTGAACCCCT GGG
AGCGAGCACTATTCAGGTCTTCAGGGATCC29755634 ACCTGAACCCCT TGG
TACACGTTTCCCCATGTTCCTACAGAAGAC31668682 ACCTGAACCCC-AGG
GCCCCATGGGAAAACCAGCAGCCTCAGCTG41404332 ACT TGAACCCCGAGG
CTGGCACCGGAGGTACACATGGATTCTGGG57224419 ACCTGAACCCA GAGG
AAAACACAAGTTCATCTTCATTGTATAAGC91020446 ACCTGAACCCC-AGG
GCCCCAGTTATCTGCTGTGATTGCAGAGGG92320690 ACCTGAA-CCCGGGG
GAGAGTCACTTGAGAGAATATTTCGATCTC94664308 ACCTGAAT CCCGTGG
ACTCTACAAAGGCATCAACAGAGTCAGCTA100270139 ACCTGAACCCCT GTGG
ACTCCATAGGAAAAACAACAGTGTCAACTA101173480 ACCTGAACCCCT GGG
ATCACCCTCTCTGCTGGGTGTTTGTCAACA102465718 ACCTGAACCA CGGGG
TTTCTCAGCACCGAGGTTCTAGGCTTCGCC109111446 A-CTGAACCCCGAGG
ACTCCACAGGAAGACCAAGGGAGTCAAAGA114002714 ACCTG GAACCCCGAGG
GACACTTGGGCTGACTCCTGACGATTTGCC128532657 ACCTGAACCCT GTGG
ACAGAGAACAGGGCTGCATTTGATCCGTGA141676787 ACCTGAAG CCCGAGG
TACCCAACAGGCTGCACCCAGACCTACTAA142721554 ACCTG-ACCCCGAGG
GTTGGTTTCCTGGGAGCTTTTTAGGTGCTT147922455 ACCTGAACCCC-TGG
AATCTGTATCAGGCAGCTTGAGGGGATCCA156212258 ACCTGAACCCCC TGG
CTACCTGCCCCTTCAGAGCCCAGTGCCCTG156376569 ACCTGAC CCCCGGGG
GGAAGCAGTGCCGTGAGCGCTGGCACAACC162906303 ACCTC AACCCCGAGG
CGATAAAGATGATGAAGCAGAGTGAGAGCC173300657 ACCTGG ACCCCGGGG
TAGCCTTCACGTGGAACATACATGCAGTGG175464918 ACCTGAACCCA GTGG
TAGCCTTCACGTGGAACATACATGCAGTGG175562490 ACCTGAACCCA GTGG
TAGCCTTCACGTGGAACATACATGCAGTGG175692318 ACCTGAACCCA GTGG
TTCTGGTCAGGGACAGCCCTGCCATCTTCC5024175 ACCTGAACCCA GGGG
TAAAAGATTCCCATCCCCCACAGGAAACAA40172286 ACCTGAACCCC-TGG
GGAATCGAGAGCTGTTGCTGTACAGGTGGT41051097 ACCTG-ACCCCGGGG
ACCCTATAGGTGGAACAACAATATGAACTA41762213 ACCTGT ACCCCGAGG
ACACCCTACTAACATGAAGTCTTGCTTGTC46113826 ACCTGAACCCC-AGG
ACTCCACAAGAAGACCAACACAGTCAACCA58086309 ACCTGAACCCCT GGG
TTACTTTCTGCCTTCTCCCCCCAAAAAATC70161724 ACCTGAG CCCCGAGG
TCTAGGCCTCATCCTGGACTTGATACTTCT86980885 T CCTGAACCCCGGGG
GGGTCACAGTACAAAAATGGCCAAGACATA87001634 ACCTGAACCCA GGGG
AAAATTCTTACTTTGGCCTTGCCATCTTCC91132215 ACCTGAACCCA GTGG
CACTACAGGAAGACCAATCAGAGTCCACTA99017190 ACCTGAA-CCCGTGG
TTCTGAAGACATAGATCTGAACCTGGCTGT104181277 AA CTGAACCCCGAGG
ACCCCACAGGAAGACCAACAGTGTCAACTA105695743 ACCTGAACCCCT GGG
ATCTCATGGGAAGACCATCAGTATCAACTA117172311 ACCTGAACCCCT GGG
CGTCCTCCTCCAAGGTCTCGGCAGCGGGCG121747341 ACCTGAAG CCCGGGG
GTCCTGCCCTGGCTCCCTTTGTGAAGCTGC121828887 ACCTGAG CCCCGTGG
ACCCTTTAGGAGGACCAGCAGTTTCAATTA132055103 ACCTGAACCCCGAGA
TCTAATCAGGGCCAGCCCCCGCCACCTTCC137806302 ACCTGAA-CCCGCGG
AGAGCAAAGCAAAGTGCTCAGGAGACCAGA141869758 ACCTGAACCCCC AGG
TAATCATCAGATTAACTAATAGCCTGTTCC16029203 ACCTGAACCCA GCGG
AACCCGATCTGGTATTGGGTGAGGGAAAAG28517922 ACCTGAAG CCCCGAGG
ACGGCAGGGAAACATTTCCGAATCTTAGCA32701811 ACCA TGAACCCCGGGG
TCACTGCTTGGAGTGACCCCGCCTGAAATG45468666 ACCTG-ACCCCGGGG
ACCCCATAGGAAGACCAGCGATATCAACTA68443227 ACCTGAACCCCT GGG
ACTCCACAGGAAGAGCAACAGAGTCAACTA84780866 ACCTGAA-CCCGAGG
AGGTAAGCACTCTTGTTTCTAAGCCCGCTG105848841 ACCTGAACCCCT GGG
TCATCTGAAATCTTCCCCATGCGGAGCCAG107410026 A-CTGAACCCCGTGG
TGCTGACCGTTCCATAGCCAGTGTGCTTGG127425139 ACCTGAG CCCCGAGG
GGGCGGGTAGCAATACCAATGTCTTTTAAG130632209 ACCTGAACCCCGGGT
AGCCAATGGTTTGCTTTTGCACTTCTCAGA135994796 ACCTGAAG CCCGTGG
CAAAAACAAAAAAAACCTAAACAAACATAC143118788 ACCTGAA-CCCGTGG
TCACTCCCCACCCCCATTTTACTCAGCTAC144845947 AT CTGAACCCCGAGG
TCTTGAGGGGATCAAGAGAACTGAGGATCC154640655 AG CTGAACCCCGGGG
AAGACTAGGGTTCCTAGATTCAGAACTATT155909184 ACCTGAACCCCGTGG
GCAAGTATCTAAAAATGAGATTCCCATGAC22683963 AA CTGAACCCCGTGG
CCACATCCCTGCAATCCCAGCTGCAAGTCC25101288 ACCTGAACCCCA TGG
AGGGCACCTTCACCAGCTGCCGCAGCCTCC30405606 ACCTGAACCCCT GGG
AAATTCATCTGCCCGCAGACAGAGTTGTAC32106823 ACCTGAACCCC-AGG
ATGGTTGTGAGCCACGATGTGAGTGCCGGG33037346 ACCTGAACCCT GGGG
CATATTCCCACAGGTCAGCCAGGCTGGGTG35185744 ACCTG-ACCCCGGGG
GCCTGGCAAGATGGCTCAGCCAGTAGAGGC35530174 ACCTGAA-CCCGAGG
TAGGATCTCAACAGGAGGATCAACAAACTA49646634 ACCTGG ACCCCGTGG
AAGAACAACCCCATAAGAAGGTATCAACTA62954959 ACCTGAACCCCT GGG
CAAAATGAAAATAATTGTTCTGCCTCAGAC63559531 ACCTGAACCCT GAGG
GCACGGAGAAAGTTGGAGAGAAAGCTGAAG64532379 A-CTGAACCCCGGGG
ACTCCACAGGCAGACTAACAGAGTCAACTA81382077 ACCTGAACCCCT GAGG
GGGATCCCAACTCAATCTTCAGTTCTCTTT98499248 A-CTGAACCCCGGGG
TCTGACCACTAAGCTTTCCTGTCATGATGG100230121 ACCTGAACCCCGTA G
ACTCCACAGGAAGACCAACAGAGTCAACTA100773961 ACCTGAACCCT GGGG
ACAGTGTGTCACCTCCTCTGCCACATAGCT103676325 C CCTGAACCCCGAGG
TCTACTGTGGCACACAGGCCAGTCATTTCT115434063 A-CTGAACCCCGGGG
TGGGTGGCAGGTGAGGCCAGACACAGACAG135413389 ACCTGAT CCCCGAGG
TCTGGGCTGTTCTGTGACCCTTGGGGAGCA140730991 AT CTGAACCCCGTGG
CAACCCTGATCAGTTAGCTTGCCACTTTGT148286158 ACCTGAACCCA GAGG
ATCTGCCTTTCCTAATCTATGCTGCCAGCG21661615 ACCTGAACCA CGAGG
CAATGCTTTGACTCACTTTTAAGCCCTTCC24234996 ACCTGAACCCC-TGG
CATGCTACAGAGATTAAGTGGCTGTTCCAC31680406 ACG TGAACCCCGGGG
AACAGGTAACAGAGAGTTAGTTATAGGTGG48197411 ACCTGAACCCA GTGG
GGCATGAATCGGAATCCAGTCCACTCTTTT51367802 ACCTGAACCCT GAGG
GAGTGGTAACCACATGTCACCCCGGCCATC51779282 ACCTGA AACCCCGGGG
ACTAGCCCGGCAAAGTACCAGACATCCCTC52162993 ACCTGAACCCA GGGG
GGGATGCCCTCCACTGCCTCAGCTTCTTTC92160789 A-CTGAACCCCGAGG
GACCAACTTTTCCTTTGTATTTAGTCCAGG100526337 ACCTGAACCCCA GGG
GAGAGGGGCAGACCTCCAGTGTCATTCCAT125767419 G CCTGAACCCCGAGG
CCTGGGGTCACTCAGTAGGAAAGGATTTAA126708332 ACCTGAACCCC-TGG
TCCTCTATCTCAGTGCAAGTGGGCTTCACT134182027 ACCTGAACCCA GAGG
ACACCATATGAAGACCAACTGTGTCAACTA135103457 ACCTGAACCCCA GGG
ACCCCACTGGAAGACCAGCAGTGTCAACTA135614888 ACCTGAACCCC-TGG
TCAGAGTCGGATAACTGCTTCATCTTTAGA137043094 ACCTGAAG CCCGGGG
TAGTGCTGTGCCCCTGACACCAAGTGATCC138395406 ACCTGT ACCCCGAGG
TGATCTTTCCACTTCCTCTTCTGCGTGGGT16041531 C CCTGAACCCCGAGG
GAGCAATCCTGGATAGAAAATGGCAATCAT19718408 ACCTGAACCCCGGGG
GACCCATAGGAAAACCAGCAGTCTCAACAA23687335 ACCTGAACCCCA GGG
TCAGAGCTGCGAGCCTTTGTGAGTGTGCTT25093557 ACCTGAACCCCGTGC
CCTTTGCCCAAGGTCAAGAGCCAGAGCCAG29168072 ACCTGAACCCC-AGG
CTCTGGCTATTCTTTTGAAGTTGTCTCTCT29579554 ACCTGAA-CCCGGGG
GGGCAGGAGCCACCTGTGTATCGCAGTGTG43326583 ACCTGAG CCCCGTGG
TTGTCAGAGGGCTTAGCATCTTGCTTGAGC44087606 ACCTGG ACCCCGGGG
GAGGTGAGATTCAATTGACTTGACCTTGTT49689308 ACCTGAACCCCGCA G
CAGTACGAAAACCCAAGACGGGCACCGCCC66671631 ACCTGAACT CCGAGG
GCAGAATTCTCAGGATTTTCAGAGGTGTAG67850448 ACCTGAACCCC-TGG
TAGCCAATAGCAGCAATGCGGGAGTTTAAA69600543 ACCTGAACCCT GGGG
GCCGGGATGATACGGTCAACTTCCAGGACA75515370 ACCTGC ACCCCGAGG
CCTGATACCCGCATCTTCCGCAGAAGGTTC78792301 ACCTGG ACCCCGAGG
CTGAGCTTGTTTTTTGAAGGTGCAACAAGA86025929 ACCTGAACCCC-AGG
TTTTACACTCTTTCCACTTCCTGCAAAATT120841319 C CCTGAACCCCGAGG
CACCAGAGGCAGTTAAGAAAAATAAGTCTT135150042 ACCTGAG ACCCCGTGG
ACAGTGCCAGAGCCTCCCCAGTTGTAGTCA138570010 T CCTGAACCCCGGGG
CCTTGCATGCCACAGACAGATGTGGGGAGG138698907 ACCTGAACCCT GAGG
GCAGAGCTTTACAACCCCCATTTAAGGCCT142119544 ACCTGAACCCT GAGG
CTTAGAGACCTTTCTCTGAGTCTTAGAGAC10906797 ACCTGAACCCA GTGG
GCGGGCTGGGTGCAGAGGCTGCCTGCTAAT11652282 ACCTGAG CCCCGAGG
GAAGTTCATGATCTTGCTGGATTATGCACA12156625 AA CTGAACCCCGGGG
AAACCAAAACCCACAAGGTTAGCAAATTTA14240521 ACCTGAACCCT GGGG
CAACCCCACAGGCAGACCAACAGTCAACAA44924853 ACCTGAACCCCT GGG
ACATGAATTACTATTGCAGAATACAGCATC45720998 AG CTGAACCCCGAGG
TTCTGGGCTGCAGACCCCAGCAGGTACATT47845315 AA CTGAACCCCGAGG
CAGAGGATGACTGACCACCAGACTCAAATA72604804 ACCTGAACCCT CGGGG
ATGAGTGATAAAGAACAACTCATGCCCACC73507532 ACCTGAA-CCCGAGG
GTCTCCTACAATCTCTCTGCATCTTCTTCT96846356 ACCTGAACCT CGAGG
ACGTGCTCTCAGCATTCCCGCAACAGCCTC120331872 ACCTG-ACCCCGGGG
TCAGGCTGACCTGGGCTCAGTGAGTCCCCA125275588 ACCTGAACCCCGAGG
TGCTGTGTGGGTCAGTTTAGACACAACAGT125276003 ACCT-AACCCCGTGG
TGCAGCAGGAGGGGCTAGGAGGTGCCTGTT127832646 AG CTGAACCCCGAGG
CCACCATGCCCACTCTATGGGGTGCTGACT20895053 A-CTGAACCCCGAGG
TCCAAACTAAATAGAGCACATCAGTGATCT24579350 ACCTG-ACCCCGTGG
CTTTAAAGGAGGATCTGGAATGCAGAGCTG38639208 ACCTGAACCCT GGGG
GGCTTCCCGGGGACACCCCACACACACTCG50919949 ACCTGC ACCCCGCGG
GCAAAACCCAGCCTTCTCACCAACCTCCTA71500630 ACCTGAACCCCGAC G
GGCTGCTTGAACAGCTAGAGGAAGGTAAAG72461363 ACCTGAAA CCCGAGG
TGGCTGAGAGCTTGTTTCTTTCTGCTGCAG75201208 ACCTGAAG CCCCGAGG
CCGAGTACAAATCAGAAGCAGGAGAGGCTG81786174 ACCTGAT CCCCGAGG
TAAGTATCCAAGATGGCAGTGGTCTGGGTA97442642 T CCTGAACCCCGTGG
AACAACAGTGAGCTAAAAAAAATCAGTGCC97891936 ACCTG-ACCCCGTGG
TCTCCTATGAGGCTGATCCCACCCTGCGTT108938736 C CCTGAACCCCGAGG
TAACTACAACCACACGATGTACAAAGTTCA118416425 ACCTGAACCCCA AGG
TGCGCCAGCAACAGAGGTGAGAGCTCAACT118684963 ACCTGAA-CCCGCGG
AGACAGACACAAAGCACAATTGCAGCTTTC8719139 ACA TGAACCCCGGGG
CCTAAAGACTAGCAATGCCTTTACCCCAGT9622659 ACCTGAACCCC-AGG
AGCAGAGCAGATCAGCCTCTCGTGGACTGA16905787 ACCTGAACCCT GTGG
TCCACTTGGGATTCCAGCAACCCCGCAGGG61199129 ACCC GAACCCCGTGG
AACCTGGTAAAAGAAAATTGTCCTAAAGAG66908477 ACCTGAACCCA GCGG
ACTCCATAGGAAGACCAACAGAGTCAGCTA69922781 ACCTGAAC CCCCGAGG
GGAGCTGAAAGAAGCAGAGGTCGAAACAGG70999254 ACCTGAACCCA GAGG
ACTCCACAGGAAGACCAACAAAGTGAACTA73101265 ACCTGG ACCCCGAGG
CTGTCAGGTCCACCAGGGACCCCGCCTTTT74824004 T CCTGAACCCCGTGG
TACTGCCTCTGTGTGGTGACTCTGGCTGTC80076062 ACCTGAACCCC-TGG
ACTGAGCATTTACTATCTGCCTCACATTAG92625044 ACT CTGAACCCCGAGG
TTTTTCTCTTATTTATTTTGTATGCTAGGC93813467 A-CTGAACCCCGGGG
TGAGACTTGGTAAGTGTCACCCAAGACTCC94779353 AT CTGAACCCCGGGG
AGCATTTGTTGAGGCGGACTCTGTCCTTGG96393715 ACCTGAACCCCC AGG
ACCCTCAGCTTCGCTGTCAGCCCTCACTCA110618386 ACCTGAACCCCGTGA
CATGGATTATAACTCAGCCTGCATGCGCCT119315973 ACCTGAACCCCT GGG
CGAGCGGCCTCGCCCGGAGGCCCGCGCCCC3724858 ACCTGAACCCC-AGG
GTAAGAAGTGTTCATGTGTAGTTTAATGGA37718282 ACCTG-ACCCCGGGG
CTGTCTGCAGTCCAACAACAAATGTAAACG50310973 ACCTGAACCA CGTGG
GGACACTTGGCGGGCTCCCGGGAAGGGGCG53992136 ACCTG-ACCCCGGGG
GACCTCGGCCCTCGGGAACACGTCTGGGAG59198400 ACCTG-ACCCCGGGG
TGATGTCCATAGGGAATAGATTGCAAGACA68180780 ACCTGAACCCCA TGG
GAGGGGGCACTGCTTCGCCAGTCGTCCTCT80314955 ACCTGAACCCCGAT G
TCATCCCTCACCAACTGCAGCAGTAGGGAG94155474 ACCTG-ACCCCGGGG
TGAAAGGTTGGGGATTAGCATCAGTTACAG94648947 ACCTGAACCCCA TGG
TGAAAGGTTGGGGATTAGCAGCAGTTACAG94670491 ACCTGAACCCCA TGG
TGAAAGGTTGGGGATTAGCAGCAGTTACAG94752942 ACCTGAACCCCA TGG
TAGCCTTGGCTGTCCTGGAACTCGCCCTGA94803063 ACCTGAACCCC-AGG
CTGAAGTTGTGTAGGAAAACCAACAAATAA97108292 ACCTGAACCCCA GGG
TAGGCTAAGTGTCTCCATGACCCCTTCTTG97437162 ACCTC GAACCCCGAGG
AGGAACAGGCAGGGAAAGCCCCGGCTGCAA102106580 ACCTGAACCCCGTGG
AGTGATGAGGAAGCACCTTGATCAAACCAG107597146 ACCTGAACCCC-AGG
TCCCCGAGCTTAAGTCCCGGGGACAAGCAG108234263 ACCTGAG CCCCGGGG
GGAATAGATGGCAACCCCATTGGAAGACCA111763572 ACCTGAACCCC-TGG
AGGTAAGTACTCATCCCCTGAGCTGCTGAG113681029 A-CTGAACCCCGGGG
AGGTAAGTACTCATCCACTGAGCTGCTGAG113681085 A-CTGAACCCCGGGG
AGGTAAGTACTCATCCACTGAGCTGCTGGG113681141 A-CTGAACCCCGGGG
AGGTAAGTACTCATCCACTGAACTGCTGAG113681197 A-CTGAACCCCGGGG
AGGTAAGTACTCATCCCCTGAGCTGCTGAG113681310 A-CTGAACCCCGGGG
AGGTAAGTACTCATCCACTGAGCTGCTGAG113681367 A-CTGAACCCCGGGG
AGGTAAGTACTCATCCACTGAGCTGCTGAG113681424 A-CTGAACCCCGGGG
AGGTAAGTACTCATCCACTGAGCTGCTGAG113681480 A-CTGAACCCCGGGG
AGGTAAGTACTCATCCACTGAGCTGCTGAG113681536 A-CTGAACCCCGGGG
AGGTAAGTACTCATCCACTGAGCTGCTGAG113681592 A-CTGAACCCCGGGG
AGGTAAGTACTCATCCACTGAGCTGCTGAG113681648 A-CTGAACCCCGGGG
TAGGTAAGTACTCACCACTGAGCTGCTGAG113681703 A-CTGAACCCCGGGG
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/1/ACCTGAACCCCGNGGen |
db : mm39 |
k : 1 |
strand : ACCTGAACCCCGNGG |
format : html |
download :
0.007 | 0.007 | search_start;
0.495 | 0.488 | search_plus_done; http://172.18.8.138:28851/match?q=ACCTGAACCCCGNGG&k=1&no_gap=0&offset=0&limit=200
0.813 | 0.318 | search_minus_done; http://172.18.8.138:28851/match?q=CCNCGGGGTTCAGGT&k=1&no_gap=0&offset=0&limit=0
0.813 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.