— Rational design of CRISPR/Cas target.
2025-06-22 03:46:18, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
CCGAGTTTCTACAGAAGTGGGTTACAACCG4714065 CCAGCA-CACCTGAA
TTGCTGTAGCCAATTGTGACCAGCCTTCTT5115102 T CTGCACCACCTGAA
CAGGAGTTCTGCTGCATGCAGAGCAACAGA9548799 CCC-CACCACCTGAA
TTCAGCTTTCTGAGAGTCTGGGACTAAAAG12439113 CCTGCACCACCTGAC
TGTTTGTGCCTGGAAACAACTGACTCATAT13155980 CCTG-ACCACCTGAA
ATCTGCTGCCAGGAAGTTACGGTGTACTGT13175883 CCTGCACC-CCTGAA
ACATCTTTAAAGAGGCCCTGAGTTTGGTTC14638089 CCTGCAC CCACCTGAA
CTAGCAAAGAAAGATGAGCTCATGTCAGAG14661360 CCAGCACCA-CTGAA
GCTGAAGAGTCAGCTTTGATTATCAAGAGA16785696 CCAGCACCA-CTGAA
GTATTCCCACCACAGCAAGCAATGGTTACC17889010 CCAGCA-CACCTGAA
TGAGTCAGACAACTTGGAGAAGAGTTTGAG19478739 CCAG-ACCACCTGAA
TCTTCTCTGCAGAGTCAGCAGGGAAGGACT23144223 CCTGCA-CACCTGAA
AAAGTGGAGAGATCTTAAGCTAGTAATTTA28813384 CCAGCA-CACCTGAA
GCTGTCCCCTGAGTTTTAAACAAAGGTAGA29517621 CCAGCACCA ACCTGAA
TCCTAAAAATAAAAAGTAAATTTAATATCA37852045 CT TGCACCACCTGAA
TAAGATAGATGGATCAGTCTGGCCACCAAA39285664 CCTG-ACCACCTGAA
AAGCATACACAGCGCTCTGGGTTCAGATCC39331960 CCAGCACCACA TGAA
TGTGTAGAACATTCTACCATGATAGCAAAC39474226 CCTGCACC-CCTGAA
GTGGCATGCTGTCATGCCAGGAAATGCCAG40872171 CCAGCACT ACCTGAA
GAAAGTGACCAAGAATTAGGCAGGCAAAGC42609465 CCAGCACCACA CTGAA
TCCAAACTCAGGTTTCTCAAGCTTGGGTAG54680252 CCTGCACCACCTGAG
CTACCATGTGTGAAGCCTTGGGTTTAATCT57267126 CCAGCACCACA TGAA
GAAACCCTGCAGGGTCAGGAACCATCAGCT57992268 CCTGCACC-CCTGAA
GGGCTGAGCGACATCTTCCCCTTGAATAGC58305901 CCAGCAA CACCTGAA
AAACTCTCTCTAGACTGGAGTCTCCCAAAA58307346 CCAGCA-CACCTGAA
GAATAAAGATGTTACCATTGAATTTAATCA59914502 CCAG-ACCACCTGAA
AAGAGCTCAGTGTGGGGACCTGTGACTCTG60754378 CCAGCACCACCTGG A
AAGTATGACCTCAAACTCATGACCCTCCTA70843279 CCAT CACCACCTGAA
TGGCTTTCAGTGGAATTTCTCTGCAGAGTC72483626 CCTGCACCAT CCTGAA
TCCCACTCAAGAGGAGACTTGAAGTGCTTT75657400 CCGGCACCACCTA AA
TAAACTCCCTCTTCCCTTATAAGGTTATGT76734230 CCAGCAG CACCTGAA
GATCACATCTTGCTCACACCCCTCCTTCAC80006742 CCTGT CACCACCTGAA
CACATACTGTGGTTTCTGCACCAATCCCTA81726317 CCAGCACCACCTGC A
ATGGTAATGGTGTGTTTGTGTGTGTGTGTA83290488 CCTGCA-CACCTGAA
CCAAGCAGGCCAAGACATGCTGCTCAGACC84405876 CCAGCT CCACCTGAA
AGCCTGTTGCCTGTCTGCCTGCCTGTGGAT89341652 CCTGCACC-CCTGAA
AATAAGGCGACCACATTTGCAGGGACTTGT89549728 CCTGCACCACCA TGAA
AGCAAGAGCACACCCTCCCCTTCCCCCGCC90824545 CCAGCACCACCT-AA
TTGTTCTAGTTTAGCAGGCTCCTTCTGCTG91495860 CCT-CACCACCTGAA
AGGCAGAGTCCTGAGGTTACTTCCTGCTCC92743722 CCAGC-CCACCTGAA
AGCCAACCACTCAACTGTCTGCTCCTTGCG92807270 CCAGCACCACCT-AA
ATGCTGAGACGATTTATGAACGCAAACTTA95379204 CCTGCC CCACCTGAA
ACGGTGTAAGCTGAAGACACTTCGTGTACA97577760 CCAGCA-CACCTGAA
GCACTCCCACCTCACCCAGTCCTGGGCACC101162118 CCAGCA-CACCTGAA
CAATTTAGTGAACTCTTGTTTATGCCTAGT112928073 CCGGCACCA-CTGAA
GCCTAGCATGCAAAAGCCTTAGGATCCATT118656825 T CAGCACCACCTGAA
ATCCTCAGCTGCATACAGAGTCCAAGGCAG119320556 CCTGCACA ACCTGAA
GTGTAAGCATGAGGGCCTAAATTTGGATGT121075273 CCAGCACCACCA TGAA
CAGAGTGGGTGCTGGTCATCGAGTCCAAAC121383934 CCAGCACCACA TGAA
TTTCTCCAATAATAGTGTCACCCCCTCCTG121471144 CCA-CACCACCTGAA
AAACACTGCTTTTATCTTTCTCTGGCTCAC125549478 CCTGCACCACCTGAT
CCTACTCTGCACCAAGGCCTGTATTTAACC126297172 CCAGCACCACG TGAA
AAATGGCAGGGAGCACGTGATTTGTGGTGC128625826 CCAGCC CCACCTGAA
GCGCCAGCCACAGGGCCTGGTAGCCAGCGC131197837 CCAGCACCC CCTGAA
GGAGAGGAATGTGGGCAGAGAAGAGAGCTG132637362 CCAGC-CCACCTGAA
TGTACCACACGCTTGTGTTTGTGATGCAAA136201405 CCTGCACCACCTGT A
AGAAACTGCCTCTGAAATCCAGGAACTGAA146599178 CA GGCACCACCTGAA
CCTCTTGATTGATGGGATTAAAGATGTGTG150505170 CCAGCACCAG CTGAA
GTTTACACAACAAAAGCATTCCCTTCTTTT152023851 CCTGCAA CACCTGAA
CTCCTCTGTGAGATACCCTCTGCCACTTGC152526938 CCCT CACCACCTGAA
AATGGCCTCAAACTTACAATCATTCTCTTG155862751 CCTC CACCACCTGAA
GGACTACATAAAAAGACTTTAGCCCAATCC162459383 CA AGCACCACCTGAA
GTCAGGGGAGGGATGAAGGAGGCAGCCAGA163421672 CCAGCACCA-CTGAA
AGCCACACTCTTAAGTGCTGCGTCATCTCT164110818 CCAGCACCACCT-AA
AAGGCCAGCACTGGTCCTCGATACACCCAA165229495 CCTGCAG CACCTGAA
ATACCACATTCTAGCACATTCTAGAACATT168171839 CT AGCACCACCTGAA
CTAGCACAGCATGACATTTTCTTTGTGGAC169192551 CCAGCT CCACCTGAA
ATGTAGGGGTGTGGCTGTCAGTACACCTTC177549091 CCAGCACCACCTGAA
GGCTGCTCTTCTCTGCATGCATTTCCATTA178625378 CCAGCAG CACCTGAA
GTGTGGGGTTGTCAGATATAAAATCCTGCT182989410 CCAGCACC-CCTGAA
TTTATGCCTAGGCAATTGCAGGGGCCAATT183348190 CCTGCA-CACCTGAA
ACCATTCTCTTCTAGGACAATAACTAGAGC187531219 CCAGCACCACC-GAA
CAGCTTTCTACAAAAGCAGCACCCACCTCG188707409 CCAGCACCAT CTGAA
GATTCAGATAGTATTGGCCTAATACCAGTC190231815 CCTGCACC-CCTGAA
GCTCTCCATGACCCCCTCATGCTTTCAAAA191532326 CCAGCACCACCTGAG
AGGACTGCAGGACGCCTGTCTCAACAGCGG193196286 CCTGCACCT CCTGAA
TGAGCAAGCACAAAGGGCTGAATTCAGACC4492729 CCAGCACC-CCTGAA
ATTTAGAGGAGCAAGAGCAACTTACAAGTG10076679 CCCGCACCA-CTGAA
GGTTCCGAGGCTACCATTAACCCCCATCTA10706645 CCAGCACCA ACCTGAA
CTAGCACACAGAAGGCTCTGGATTCTGGCA11452122 CCAGCACCAT CTGAA
AGCAGAGACTGAAGAAAAGGCTATCCAGAG15732839 CCTGCC CCACCTGAA
GTTGGTGATACTGTTGGGTCAGAACCAGGG16026152 CCTGCACCACC-GAA
TATACCGAATGAGAAGAGAAATGAAAAATG16124103 CCAGCAA CACCTGAA
TGTCAATCAAGAGGGAACATTAGAAATTCC16510024 CCTGC-CCACCTGAA
AATATTGTTAGCAGTAGGTTTGTGTAACCT20888963 CCTGCACCACCTGAA
CTCAGCCTCCCATGCATCCAAGATTACAGA21914998 CCTGCACCACCA GAA
TCTAGGTGTGTCTGCACAGCTCAGCAGCAC22287423 CCGGCACCG CCTGAA
AAAGAGTGGACATGTTCTATAGGCTACAAA24527429 CCAGCA-CACCTGAA
GCTGAATCCAATCCCAAATGGGAAGTGCAG26843165 CCAG-ACCACCTGAA
ATATGGGCCAGAACGTCATGTGGACTTAGC27163873 CCAGCACC-CCTGAA
TGAGACACATCCGGTGCTGTGGCTGGGCTC27395798 CCAGCACCACCTGG A
GGTCCATGGAATTCCCCTCTTCTCAGGGTA28235955 CCTGCA-CACCTGAA
TCACTGTCATCTGCCTGCAGGACCTTTTCA31991669 CCTGCC CCACCTGAA
TTCCTGGGTTCCAGCCCAGCCCAGCACCTA32755833 CCTGCAT CCACCTGAA
TTGGTACTTTTGAGGACCTGGCTTCTCTCC34853516 CCAGCACCACA TGAA
CACTTCTTTGCCGCTTACTTCCTTGCCTGC35114563 CCCG-ACCACCTGAA
GTGGAACAAATAGGCCCCTAGAGTCAGGCT37819835 CCTGCACA CACCTGAA
GCCATGACCTAACGCCTCACCTCCTGCCAT38827652 CCTGCACC-CCTGAA
TCTTAAATTCCTATATTTGAGGTCCCTCTT39930113 CA GGCACCACCTGAA
TCCTAGCACACGAGCACCTGGGGTCAAAGC44788925 CCAGCACCACA TGAA
TAACTTTCATAGCATGTATTCTCACCCCAA56613692 CCTT CACCACCTGAA
ATCTGATGTGCTCTTTGGAGCACTGTTTGT61028573 CCTGCACC-CCTGAA
GAGAGTAGTTTATCACCCAGAAGAGAGTTC67582515 CCAGCAG CACCTGAA
GTCCAGCCCTGTTCCATACAGCATTGTCCA70114003 CCTGC-CCACCTGAA
TATCAGCCCATCAGACTGTAGGTTCATTTC70919449 CCAGCACCACCTA AA
AATGTTATCAAAAGGCTATGAAGACTGACT72048395 CCTGCC CCACCTGAA
GGGATTATTAAAGGCGTGCAATCACCATCA72778214 CCAC CACCACCTGAA
CAGCTCCAGTAATTACCAACCCACGGGCAT75353697 CCTT CACCACCTGAA
CACAGCAGGCACACGACTCAGGGGTTCGAT80148159 CCC-CACCACCTGAA
GTTGAAGGGTCAACCACAATTAACAGGAAA82603495 CCAGCACCA-CTGAA
CCTGTTCATTGGTTGTGCGTCCCCTAGCCA84524688 CCAGCACCACA TGAA
GTACCAATCACTCCAGACCACATCCCATTC90352882 CCAC CACCACCTGAA
CCAGCTGAGCCAGCCCCGCCCACCCACAGC92816189 CCCGCACCACCTGAG
GACACCCACCTCGGCCACCGCAGCCCGCGC92845511 CCTGCACCACCTGC A
GCTACTTCATTGGGTTCTTTGTCTTACCTC102759606 CCTGCACCACCTGT A
TCTCCTGAATGTTGTGATTAAAGGCATAGT113422096 CCAGCA-CACCTGAA
TTAGCATGTAGGAAGCCCTGGATTCCCTCC119637221 CCAGCACCACCTA AA
GTTCCCTCTAGTAGCACATATTAAGGCTGT121957742 CCTGCACCACCTGAC
ACATGCGGTGGCCTCTCCAGTCTTTCCCAG126412186 CCTGA ACCACCTGAA
CCTACATGTGTGAAGCCTTGGGTTCCATCC127488195 CCAGCACCT CCTGAA
GATTGCTCGTCAGCCAGAGCTGCGCGAGCA129774837 CCGG-ACCACCTGAA
GGGATCATAAATGACAGGATTCAGTGCGAT131625593 CCAGCACCACCA GAA
AAGAGAAAGTTTGAAGAAGCCTTCAGCAGG131700955 CCAGC-CCACCTGAA
GAATTAGCCCTCTGGGGTCATCATGATGGA134678211 CCAGCACCACCTGC A
GACTGAGCAAGCCACCTTGTGTGCCATTGG145572573 CCAGCACCAG CTGAA
CACTCCAAATCCTACTTTCAGCCCCATCCA146325560 CCAGCACCAT CCTGAA
GCAGTATTCCAATACTCAGAACCCTGATAT147502229 CCTGCT CCACCTGAA
CTGTGAAGGAGAAGGGAGACAGCCTGGCTC152886003 CCAGCACCACA TGAA
ATACTCTCTCAAGAAATTCCGTAATTTTTT153860860 CCC-CACCACCTGAA
CTCATCCGGGTGGAGAGGAGCAAGAGCGGC154048411 CCCGC-CCACCTGAA
CTGCAGATAAACCCCGCTTCTTACATCAAT155051091 CCAG-ACCACCTGAA
GTTGGTGATACTGTTGAGTCAGAACCAGGG156199083 CCTGCACCACC-GAA
ACATACCAGCTCCACTCAAGTAACAAAAAC157461949 CCAGA ACCACCTGAA
GGTAGACTCCACCATAGCTGCAATTCTGTG157927603 CCCGCACC-CCTGAA
TAGAATGCTTGAAGCCCTGGGTTTGATTCC163164329 CCAGCACCACCTA AA
TCACTGAATTTGATGCCACTGCATCGGATT164333846 CCAGCACCACCT-AA
TCAGTTTTTCCGTTTTACACCCTCCAAACA164804880 CCTGCACCA-CTGAA
GGGATGTAGCTTGGCTGGCGGAATGCTTGC165103688 CCAGCACCACA TGAA
ACTAGCCATTAGTAAGCACCCACTGTTTGC165408190 CCAGCACCACCG TGAA
ACCATAAAAACCTTAGTCACTGTTCAATGC168995928 CCTGCACCAG CTGAA
AAAAGAATTCTTCCAAATTCAGTTGTGAGG171940509 CCAGCACCACCTGAT
GATGTCCACTGTATTCAAAACCAAGGTATA4247732 CCAGCACCA ACCTGAA
TAAAAGTAATCTCACTGGAAACTAAGTGAT4428965 CCAGCACCACCTGT A
GCAGTTCCACCACAGCCAGTCCTAGAAACC4591495 CCAGCA-CACCTGAA
CTAAAGTGCACAAGGCCCTGGGTCCTTTCT9039470 CCAGCACCACG TGAA
GGATCTTTTAGTTACTTGTTCTCTGAGTTG9374507 G CTGCACCACCTGAA
AATAGTGCCATTGTAGGAAGATGGCAGGCT16387529 CCAGCACCACT TGAA
AACTAAGGATAATCATGAAAAAGGAAGAAC17815424 CCGGCACCACCTA AA
CATGCATGAATCCTGAGAACACATTAGAAC18513852 CCAGCACCAT CTGAA
GAAGGCAGGAAATTGCCCTGTAGCATGTAT20328307 CCAG-ACCACCTGAA
TCCCTAGCGCATGAAGCCTGGGTTCTGTCT21934310 CCAGCACCACCTA AA
TAAGTGGGACTCTGTGGAGACTCCAACCTG25261972 CCAGCACCAT CTGAA
CTCTCAGTATTGCTCTCTCCACTAGACCCA32820931 CCCC CACCACCTGAA
CTGACCGATTGCTGGAATTATAGGCACGTG33192599 CCAGCA-CACCTGAA
ACAATATTTGGTTGGAAGCTACTGCTTGCC37201015 CCTGCACCAG CTGAA
AATCATAAGGAAGGACCAGAGTTTGGATTC40407912 CCAGCAC CCACCTGAA
GACCAGCTTCTTGCCAAATGTGGATTGTCA41370733 CCGGCACCA-CTGAA
GGAATTCTGCCCCAGCTATGCTCCTTCCCT54124506 CCAGC-CCACCTGAA
GGAGAAGAATTGCCTATTATGAGTACCCTA56980959 CCC-CACCACCTGAA
GTTCTTTATGGCATACAACCTTGATTTGCA62499193 CCAGA ACCACCTGAA
TCTTGACTGGCTTGGTTCCCTAGTATGAGG65700525 CCTGCT CCACCTGAA
TGACCTTCTAGTTCTGTTTCTGGGATTTAG70104116 CCAGCACCACCT-AA
TGCTTAGCATGGAAGCCCTGGGCTCCATTA83912104 CCAGCACCACA TGAA
GAGACCTGCGTCCAAAACTCCAGGCACCGC84156106 CCAGCACCACCTA GAA
TTAAATGCAAATAAGAGCAGGTGGAGACTT91931161 G CTGCACCACCTGAA
TTGAACAGACAATACTCAAAAGAGAAATAA92642370 CCAGCAA CACCTGAA
TTGTGTTTACTTTAAGAATACTGAAGCAGT94550500 CCAG-ACCACCTGAA
TTGTGTTCACTTTAAGAATACTGAAGCTGT94644745 CCAG-ACCACCTGAA
CCTTTCTTTTTTTTAATGTTAGGGAGTGAT95235586 CCAGCACCT CCTGAA
ACGGGAGTTACAATGATTAAGTCAGATGAT95407671 CCGGCACCT CCTGAA
CTCAGCTGTAAAACCACATAGCTGTACAAG96785363 CCTG-ACCACCTGAA
AAGATGCTAGCCACATAACAGGACAAGACT99918954 CCTGCC CCACCTGAA
TGCAACAGAGGGAAGGGACTGTCTGACAAA101038394 CCAGCA-CACCTGAA
CAAGCTTCAACCATACAACACAGCACCGCA103473121 CCAGCACC-CCTGAA
CATATAACCCTTTACTACGGTTACTCCAGC106986061 CA AGCACCACCTGAA
TGCATTCCAGCATCTCAAGCAGGTTTCTAC108915930 CCAGCACCC CCTGAA
TTGATGGCTGTATTAATAAAGTGACCTCTA109697927 CCTT CACCACCTGAA
CACCTCTATTTTGCACAACATCAGAGACTA112730991 CCAGCACCACCTA AA
AACCAGATCTCTCTTCTTTCTTTCTTGTTC115889500 CCAG-ACCACCTGAA
ATGGATTGTTTGTCAACGAGTGTCTTTGCT116362694 CCTGC-CCACCTGAA
TTGTTTGTAGCTCCCATGTGTTCAGGTCCA117468662 CCTGCAG CCACCTGAA
GTAAAGAAACATAATCAGTACAGCACAGAA118149443 CCGGCA-CACCTGAA
AGCATTGCGGGTCAAAGATAAGATGGAACA125773375 CCAGCACCAG CTGAA
TCTTCCAAATGCATTATTGGTTTGATCTTC131153227 CCTGCA-CACCTGAA
AGTGGACTCACAACATCCACACAGAGTGGT132641253 CCAGA ACCACCTGAA
AACAGATCTGAGTGTCACTTATGAGTCAAG133917913 CCAGCAT CACCTGAA
ACAACCTGTTTAATTTCACTCTCTCGTACA138048069 CCCGCC CCACCTGAA
GGAGATAAAAGACAAGCCAGGAAATTCATT139549362 CCAG-ACCACCTGAA
CAGAGCTTTTCAAAACATGGCTCCTGACCA142065632 CCAGCACCACCA GAA
CTGACCTTGTTACCTCTGCCAATGTTCACC142450572 CCTGCT CCACCTGAA
CCACAGGAATGAGGTCACTGCTTACCCCAG143940201 CCCGC-CCACCTGAA
TGAACTCAGAGCCAATTGATATTGATACAA147551844 CCTGC-CCACCTGAA
CAGTTGTTCATTGCTTGTGCCAGTGCACAG154543818 CCCGCA-CACCTGAA
GGTGTGTGTGTGTGTGTGTGTGTGTGTGTC157604211 CCCGCACCACCA GAA
CAAGCTTCCTTTCACCTTATAAGATCATGC158851181 CCAGCAG CACCTGAA
TTAATGCAGACAAGGAGTAAAACTCCCAAG158891668 CCAGCAA CACCTGAA
GCTTCTGACTCCTGGGATTACAGGCGTGTA3735674 CCAGCACCAT CTGAA
CCTGATACACTACACTTCCAGACAGAACTC4817187 CCCGCACCA-CTGAA
CCTGTGAGTATGTATGGTGAAGAAGACACA6668370 CCAGG ACCACCTGAA
TCCAGGCTTGCAACCACATTGGCAGACATT10057968 CCTGCACCACCA GAA
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/1/CCNGCACCACCTGAAen |
db : mm39 |
k : 1 |
strand : CCNGCACCACCTGAA |
format : html |
download :
0.006 | 0.006 | search_start;
0.083 | 0.076 | search_plus_done; http://172.18.8.138:28851/match?q=CCNGCACCACCTGAA&k=1&no_gap=0&offset=0&limit=200
0.116 | 0.034 | search_minus_done; http://172.18.8.138:28851/match?q=TTCAGGTGGTGCNGG&k=1&no_gap=0&offset=0&limit=0
0.116 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.