CRISPRdirect — Rational design of CRISPR/Cas target. 

0 mismatch/gap   |   ≤1 mismatch/gap   |   ≤2 mismatches/gaps   |   more:

Search for: both strand plus strand minus strand

2025-06-15 04:41:38, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:3080996-3081006
TGACCTCTGAATGACTAGGGAATCTTGGAC3080996CACATTGGGGGCCTCTACTAGCTGTTAGCTTGGCATTTGGT
chr1:3095965-3095974
TGGAGAATGTGGAGAAAGAGGAACAATCTA3095965C-CATTGTTGGTGGGATTACCAGCTTGTACAACCACTCCAG
chr1:3116412-3116421
CATGTCTTAACTGATCAAAAGATTGACCTT3116412C-CATTGTAGGGCCAAGTAACCTTATGCTAAGGCCTGGACT
chr1:3143279-3143289
AAAATCATGGTTTCCACCAACCAAAGAGTA3143279CACATGGTGGGAATCATGACTCCAGATGAATATGTAGCAGA
chr1:3172860-3172870
ATAAGATGGTAAATCGTGAGAAATCCCAAA3172860CACATTGTATGTAAATCTAATATCAGTGTTTCAAAATATGT
chr1:3201700-3201710
TTCTCTCAATTAGTGATACATGGATTACAG3201700CCCATTGTAGGTAGTGCCATCCCTGGGCTGGTAGTCTTGGG
chr1:3230729-3230738
GTGAGGATGTGGAGAAAGAGGAACACTCCT3230729C-CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
chr1:3244851-3244861
TCATTCCTTCTTAGAAGGGGGAAGAAAATC3244851CCCATTGTAGGAGATACAGAGACAAAGTGTGAAGCAGAAAC
chr1:3249682-3249691
GCGTGGATGTGGAGAAAGAGGAACACTCCT3249682C-CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
chr1:3274587-3274596
GATCAACTGCCCAAGATTACCAGGAAGAAA3274587CACATT-TGGGGCAGAGTGAATATCCTCAGCCCTCCTTTTG
chr1:3276407-3276417
GTTCTGGTTTCCTGGCATGTGAGAGTAAGT3276407CACATGGTAGGAGGCTGCCTTTCTATCATTCAATTTTAGTG
chr1:3299848-3299857
GCTAGGATGTGAAGAAACAGGAACACTCCT3299848C-CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
chr1:3305169-3305178
GCTAGGATGTGGAGAAAGAGGAACACTCCT3305169C-CATTGTTGGTGGGATTACAAGCTTGTACAATCACTCTGG
chr1:3306258-3306268
AAAAAAGAATGAATTTATGAAATACCTAGG3306258CAAATTGTTGGACCTGGAGGGCATCATCCTAAATGAGGTAA
chr1:3321996-3322006
TTTCTCTACCATCTGTCTACCACATAGTTG3321996CACATTGTGGTTGTTCCCCATGCAGGCTGGCCATGCAGTTG
chr1:3324897-3324906
CTTCAATTTCCCAATCCTCCATCCTGCTCC3324897CACA-TGTAGGCTGACTGCTCAGTGATATATCATGGGCCAT
chr1:3335498-3335508
AGGAGGAAATGCTTTAAAAATGGAAACAAG3335498CACAGTGTTGGGAGGAAAGTTGACCTGACTGAGGAACATGC
chr1:3362140-3362149
GCGAGGATGTGGAGAAAGGGGAACACTCTT3362140C-CATTGTTGGTGGGATTGCAAGCTTGTAAAACCACTCTGG
chr1:3363507-3363517
CTGGATAGTATTCTGTCCTAAAGAGAAGAA3363507CACATTGTTGTCTATGTATCTGAGAGTATGGATGTCAGGGC
chr1:3365618-3365628
TCAGTTTGTTTGTCAGGACCCAATACTTTG3365618CACATTGTAGGCATTAACACTTGCCGAATGTACAGAAGGTA
chr1:3368730-3368739
CTCTTTCTAAGGAATATTCCATATTCCTAG3368730CA-ATTGTTGGAATGGTTCTCCTTTCCCCTGATTAGCCTTG
chr1:3377103-3377112
GCGAGGATGTGGAGAAAGAGGAACACTCCT3377103C-CATTGTTGGTGGTATTGCAGGCTTGTACAACCACTCTGG
chr1:3420007-3420016
GTGAGGATGTGGAGAAAGAGGAACACTCCT3420007C-CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
chr1:3464899-3464909
TTTTATATTATTTCCCCATCCTGTTACTTC3464899CACATTCTGGGTACCCATCACTACATCCCGAACTCTTAATC
chr1:3468482-3468491
TTCACTGGGGTGCATTGTGAGAAGTTTTGT3468482CAC-TTGTAGGAAATAGTGAACAGCACATAAAGTGAAACGA
chr1:3472600-3472609
TCGAGGATGTGGAGAAAGAGGAACACTCCT3472600C-CATTGTTGGTGGGATTGCACGCTTGTACAACCACTCTGG
chr1:3483868-3483878
CTCTTCAGCTCTGAAAAAGGAGGAGTCTTT3483868CACATTTTAGGGATTTCTTAGCTAGTCACTGGTAACAGCAT
chr1:3509888-3509897
GAGGCTTTGGTCCTGTGAAGGCTCAATGTT3509888C-CATTGTAGGGGAATGCAAGGGCTGGGAGGTGGGAATGGG
chr1:3513719-3513728
TTGCAGAACCAGAAGTTTTATAATGGGTAA3513719CACA-TGTGGGCTTCAGTAGACAAATATATGGTTGTCATTC
chr1:3530020-3530029
ATGGCTAAGATAAAAAACCTAAGGTGACAG3530020CAC-TTGTTGGTGAAGATGTGGAGAAAAAGGAACACTCCTT
chr1:3535915-3535925
TGTAATGGAATATTTTCTTCAATGGCTGTC3535915CACATTATTGGTGGGTCAGGCTATCTCATTGAACCTGGAGC
chr1:3590607-3590616
CTTTCTATATATTGTATATTAGTCCCCTAT3590607CACATT-TAGGATTGGTAAAAATCCTTTCCCAATCTGTGGT
chr1:3597219-3597229
CAAAGCTATGAGACAGTGTGCAGGTAATTA3597219CACTTTGTTGGCTCTGATTGTTCTATCTTTACACAGTAAAG
chr1:3625572-3625582
TTCTCATTCTCAATTTTGATATCAGAGAGT3625572CAGATTGTTGGAAGAAATTTATTTAATTTGATTCAAATATC
chr1:3629908-3629918
TAGAATATTAGAAGTGATGTTAGACATTTT3629908GACATTGTTGGGACTGTTAAACACTATGGGCATGCTCAGAG
chr1:3640079-3640088
TATTAATTGAGTCATATTTTCATTGCCAGG3640079CACATT-TGGGTTGGAGGTTTACTGCAACACCAACCAAGAC
chr1:3646543-3646552
TTCTACTTGAAGGCATCAGCCATCCTTTCT3646543CAC-TTGTTGGAACAACTGGGCAGAAATATAGAGCAAGAAA
chr1:3668327-3668336
CCCATGGAATAAGCCACCCACCAAAGAGTA3668327CACA-TGTGGGTACTAATAGCTCCAGCTGGATATGTCAATA
chr1:3678201-3678212
TAAATGGCCAACACAAAATGGACTCTAAGA3678201CACATTTGTAGGTTCTTTATTTCAAAATGCCTTGTCGGACTT
chr1:3697459-3697468
AGTTGCTAAGATTAAAACCTCAGGTGACAA3697459CACA-TGTTGGAGAGGATGTGGAGAAAGAAGAACACTCCTC
chr1:3733260-3733269
GCAATTTTGAATTCCCAAGTCTGTATGATA3733260CACATT-TTGGAGTTGGTGAATACAGCACTTTTAGCATCCA
chr1:3734697-3734707
ACGACTAACTCTGTGCACTACCTCACACTT3734697CACATTGTAGAGCACCCAATCCTATCCTAAGGACTGAGTCT
chr1:3737013-3737023
ACAAAAGTTAGTATCTAGATTAGTGTCTTT3737013CACATTGTAGATATTCAGGCTGATTAAATAAAATAATCTGT
chr1:3792904-3792913
GATGTGGGTACTGAGAGAATGAAAGAGGTC3792904CACA-TGTTGGTGGCTTATTTAAAGCTTTGGTGGCCAAAGC
chr1:3796444-3796454
AAAGGAAACAATAAAGTCAGAGCTTTCTCT3796444CACATTGTTGATTATTAATAGTGTTCAGCTCAAAATTATCC
chr1:3800350-3800360
ATTTAGGCTGATGGTTGCTTACGATTTCAG3800350CCCATTGTGGGGAACAAGGAATGGCAGCGCAGGTGGACCAT
chr1:3810200-3810209
GTGAGGATGTGGAGAAAGAGGAACACTCCT3810200C-CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGC
chr1:3820287-3820296
GCGTGGATGTGGAGAAAGAGGAACACTCCT3820287C-CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
chr1:3845219-3845229
GTTTATTCATCACTAAGTTCTGGAGGCTAA3845219AACATTGTGGGCCCAGGTTAGCAGATAGTGGATGAAAGCCT
chr1:3962642-3962652
TCCTAAGATCTCATGGAGAGTCCTCTAGGG3962642CACCTTGTGGGTGTCTGCAGACTCTGCGCCCAAGGTGACCT
chr1:3980105-3980114
TCTATGAAAGGACACCTGACACTTCAGCCT3980105C-CATTGTGGGAAGAGTCTTGCATTCCATCGCATGGTATTT
chr1:3999395-3999405
TGAAGGAAGTATTTCTAAGCTCCTTCAAAA3999395CACATTGTAGGGTCTTCATGTCACATGTATTTCCTATCCTC
chr1:4035366-4035375
GCGAGGATGTAGAGAAAAAGGAACACTCCT4035366C-CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
chr1:4051540-4051549
GTCCTAAATGTATTACATTATCTCTTGAGC4051540CACATT-TAGGAGTTAATCCATGAGGTCTTATGCCTAATCA
chr1:4091767-4091776
GCGTGGATGTGGAGAAAGAGGAACACTCCT4091767C-CATTGTTGGTGGGATTGCAGACTTGTACAACCACTCTGG
chr1:4133126-4133136
GTAAGCACTGTGACTTGTATCTATAAGCCA4133126CACATTGATGGGCCATAAATCCCTTTAGCACTCAAGCCATT
chr1:4145975-4145984
GTGAGGATGTGGAGAAAGAGGAATGCTCCT4145975C-CATTGTTGGTGGAATTGCAAGCTTATACAACCACTCTGG
chr1:4197466-4197475
GAACCTCTCAGGAGAACAACTGTCAACAAG4197466CAC-TTGTTGGTATCCACAATAGTGTTTGGGTTTGACTGTA
chr1:4203985-4203994
CTGCTGCTAGGGCTCTACCCAAACTGAAAC4203985CACATT-TGGGTAGGTTGCCCTACTCTACTGGCCAAGGTAG
chr1:4242169-4242178
AGACAGCTATATCAGTCTGGTATCAGCAAG4242169CAC-TTGTTGGCATCCACAATAGTGTCTGGTTTTGGTGGTT
chr1:4251739-4251748
GCAAGGATGTGGAGAAAGAGGAACACTCCT4251739C-CATTGTTGGTGGGATTGCAAGCTTGTACAATCACTCTGG
chr1:4263006-4263015
GCGTGGATGTAGAGAAAGAGGAACACTCCT4263006C-CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
chr1:4265122-4265132
ATAATTAGCAATTGAAGCAGGAGGGACTAG4265122CCCATTGTGGGAGGTACCATCTCTGCACTGATGGTCCTGGT
chr1:4272661-4272671
GCAGAGGTCCTGAGTTCAATTCCCAGCAAC4272661CACATTGTGGGTCACAACAATCTATAATGAGATCTGACACC
chr1:4273904-4273913
GTGAGGATGTGGAGAAAGAGGAACACTCCT4273904C-CATTGTTGGTGGGATTGCAAGCTTGTATAATCACTCTGG
chr1:4324629-4324638
GCGTGGATGTGGAGAAAGAGGAACACTCCT4324629C-CATTGTTGGTGGTATGCAGGCTTGTACAACCACTCTAGA
chr1:4337324-4337333
CAGCAGATGTGGATAAAAAGAAACACTCCT4337324C-CATTGTTGGTGAGATTGCAAGCTAGTACAACCACTGTAG
chr1:4341585-4341595
AGAGTAAACAGACAACAGTTTAGGTTACTT4341585CACATAGTTGGTTTTCAAAAACATCAAAATCCACAGAATGT
chr1:4356292-4356302
CAGGGACCTCTGGGGGGTTACTGGTTAGTT4356292CACATTGTTGTTTCTCCTATGGGGCTGCAAACCCCTTCAAC
chr1:4384525-4384536
ATCTGGAGATCCTTTTTTTCCTTAGATTTT4384525CACATTTGTTGGCATATAGATTTTTTAGCTTCTCCTTATAAA
chr1:4389743-4389752
GTTCCATATTCTAAGGAGGAATGAAGCATC4389743CACA-TGTTGGTCTTCCTTCTTCATTTTCTTGTGTTTTGCA
chr1:4405507-4405517
GGCAGAAGCCACACAGCTTCTGAGGTAGAC4405507CACATTGAAGGCTCCAGACATCCAGGCACCTTCCCTGCCAC
chr1:4415827-4415836
TTTCCTCTATTTCTGAAGAGGACAGTTCAG4415827C-CATTGTTGGACCAGGAGCCAGCTCTCCGAAATGTGAATA
chr1:4445967-4445976
GCGAGGATATGGAGAAAGAGGAACACTCCT4445967C-CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
chr1:4463388-4463398
TTAATTAGTGACTGATGGAAGCGGGTCCAG4463388CACATTGTGGATGATTCCATTCCTTCTCTGGTGGTCCTGGA
chr1:4471535-4471545
TCGCCTCCTTAAAGGTTAAATCCACACATC4471535CACATTGTAGACCCACTGCAACCAGCAGATATGGACACCTC
chr1:4492414-4492424
TGACAGGAAAGATGCCTCGGGGACATTTCA4492414CACATTGTATGACACCCACCTATTTGCACATACAAGATGAT
chr1:4499679-4499689
CCATGGGACTAAACCACCAATCAAAGAAAA4499679CACATGGTGGGACTCATGGCTCTAGCTGCATATGTAGCAGA
chr1:4515863-4515872
GTGAGGATGTGGAGAAAGGGGAACACTCCT4515863C-CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
chr1:4550554-4550565
ATTTTGGACGGAAATGGAGATAAATGTAAC4550554CACATTGGTAGGACAGAGGTGGCTAGGGGAATTTTAGTTATC
chr1:4550706-4550716
GCAGGGGGAAAATATGTATGTATTGACTGC4550706AACATTGTAGGACTGACTCCTGAGAAAGGACCCTCTAACAC
chr1:4556129-4556138
GCGTGGATGTGGAGAAAGAGGAACACTCCT4556129C-CATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
chr1:4568414-4568424
GATCCCCTATCAGGATTAACTGCATGGCGC4568414CAGATTGTTGGTTAGGGCAAGGTATGTGCTCTGTGATCATG
chr1:4582669-4582678
ATCACAAGTAGGGGGACGGAGACATTCCAC4582669CACATTG-AGGTGGAGTGAAGGTTTGTCAGCTGCTCATAAT
chr1:4593225-4593235
ATGCGGGCTGGACCGGACTGGACCTGGAGA4593225CAGATTGTAGGCGGCTGTGGACGATTTACAACCACGACTTC
chr1:4593743-4593754
AAGCTATGAACTCCACATCTACTGTAAGAC4593743CAGCATTGTGGGTTACTTCCCAGCCACTGTCCTCTGGGAATT
chr1:4595498-4595508
TCAAACCCTGAGCAGCTGCAGGCCATGAAG4595498CACATTGTGAGGGGTACCACCCGGCCTGCCCTCTACATCAT
chr1:4608210-4608219
AAAGTATTATAAATGCTCAAAGGGCAATGA4608210CA-ATTGTGGGGGCTCGAACAAAAACTCTGGTAAGCAATTA
chr1:4636141-4636150
GCGAGGATGTGGAGAAAGAGGAACACTCCT4636141C-CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
chr1:4657817-4657826
TCCAATCTCCCTCACTTTCTGAACATTGTC4657817CA-ATTGTGGGTTTTGTTCAGTTCCCATCTATGGAAGCTTC
chr1:4658423-4658432
AATATAACATATTCCTGTCACTGTAAGTTT4658423CAC-TTGTTGGCAAAAAATGTCTATTTGAGGCATGGTCTTC
chr1:4670876-4670885
TTCACTAATACGTATTTAATGCACTTTGAG4670876C-CATTGTAGGTTCCTGCATTAGCTACCATCCATTACATAA
chr1:4674179-4674188
AAAGTACATTTATCCATGTGTGTTTTATAC4674179CACA-TGTTGGGCACAGCAGGTGGAATTCCAATTTGGGAGA
chr1:4677282-4677291
GCGTGGATGTGGAGAAAGAGGAACACTCCT4677282C-CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
chr1:4679447-4679457
AGATTCAAGACATACTGGTGAGGTGTAGTC4679447CAAATTGTGGGAAAAGTTCTCCTCAGGAAGGATAAAGTTTG
chr1:4706702-4706711
GTGAGGATATGAAGAAAGAGGGACACTCCT4706702C-CATTGTTGGTGGGATTGCAAGCTGGTACAAACACTCTGG
chr1:4717430-4717441
TCATCTTCCAAAGGTCCCACCTTCAAGTAT4717430CAGCATTGTAGGCAGTTTGGCTTCCACAAATCTGAGCAGGGC
chr1:4722894-4722904
TTGATTGGTGATTAATATAAGAGGGCCCAG4722894CTCATTGTAGGAGGGGCCAGTCCTTGGCAGGTGGTCCTGGG
chr1:4724817-4724826
GTGTTTTGGATTTTGAGGGGTTTTGAGGGG4724817CA-ATTGTTGGTTGGTTGGTTTGAAACCCTGGACTATCTGT
chr1:4748105-4748115
TGCTCCGCATTCATGCCTACCACTTGGTAC4748105CACATTGTTGCCACTATTGTTAGACTCCAGCCCTCTGAAAC
chr1:4778770-4778779
TCCCCTTCCAATCCCCTACACACCCACACC4778770CAC-TTGTTGGCCCTGGCTTTCCCCTGTACTGAGGTATATA
chr1:4783528-4783537
GCGAGGATGTGGAGAAAGAGGAACACTCCT4783528C-CATTGTTGGTGGGATTGCAAGCTGGTACAACCACTCTGG
chr1:4811890-4811900
GAATCAGTTGTTTTTTGTTGTTGAATGTTC4811890CACATTTTGGGTTGAGGTAATTGTTCCACTCTAGCTTTTTT
chr1:4843900-4843910
TTTCTTAATGATTAATGGGGAAGGACCCAG4843900CCCATTGTGGGTGGTGCCATCTGTGGGCTGGTGATCTCGGG
chr1:4850220-4850230
CGCATCCAAAGTAAAATATTGAGGCTCAAT4850220CACATCGTTGGTATTGCTTTTCCAAATGAACTCCTCTGTTT
chr1:4878790-4878800
TGGTCAAAGGGTTGTATGCTGAAGAAGGCT4878790GACATTGTAGGAACAAGTATTTTCTCAAGGAGATCAGCTTT
chr1:4932243-4932253
CACTTGCTGCTCTTGCAGAGAGCCTGTGCC4932243CACATTGGGGGTTTATAGACAACTCTAACTCCAGTTCCAGA
chr1:4968914-4968924
ACTGCCTCTGGCCTAGTGACTCACTTTGCC4968914CACATGGTGGGTTATTATGATTTGGTCAGCAAAGTAATAGT
chr1:4974361-4974370
TTTTGGCAGATGTTTATATAAACATACACA4974361CACA-TGTGGGTGCTTGGGTGTGTGCACTCCGAAAGGCATA
chr1:4979112-4979122
GGGTTTGCTCCATTCTAGGTCTTATAACAA4979112TACATTGTAGGTACCATTGGCACGTAACCCATTGGAGAATC
chr1:4989470-4989479
GATCCCCTTCCTCTTTCTAACCAGTCTGTC4989470CAC-TTGTTGGGAGCTATTAAGACAACACAATTGTCCTGAT
chr1:4999247-4999257
GCCTGGAGTAGAGAAAGGTATGCAGCTAGC4999247CACATGGTAGGTTGTGGGCTAGATAGTGGGCTTAAGTTTAA
chr1:5002946-5002957
TCAGATTTTAAGCCTTAATGGAATAGAACC5002946CATCATTGTTGGCAATTTTACCTCTTGGCTTACCTCTGCATT
chr1:5085800-5085810
AATGACACTGTGCTTATTTGAATAGAAGCT5085800CACATTGTGAGTCACTTGGTGGTGCCCTAAAAACCATCCTC
chr1:5141051-5141060
CTTGACTCCTGGCCATGTTATAGTATCAGC5141051CACA-TGTAGGATGGGTCTTCCCATTTCAATTAACCCAATT
chr1:5152187-5152196
TCGTGGATGTGGAGAAAGAGGAACACTCCT5152187C-CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
chr1:5160162-5160172
TTACTAAGTTGCTCAGGCTAACCTTGAACT5160162CACATTGTAGTCTAGGCTCCTCTTGAACCTAAAATCCTCCT
chr1:5217333-5217342
ACAGGTGTAACAGACTTTTCTGTCAGCAAG5217333CAC-TTGTTGGTATCCACAAAAGTGTCTGGGTTTGGTGATT
chr1:5225481-5225490
ACGGAAAGTTAGAATCCACATGTGAGGGAG5225481CACA-TGTAGGAGTTATCATTCTCAGTATAGATTACTTTAT
chr1:5231231-5231241
ATTCGATTGGGGGCAAAAATGGTAATAAAG5231231CACATTTTTGGTGACACCCAAAGATTGTTTCCTGGTGGTGC
chr1:5231663-5231673
TCCTATATGTGATTTTAAGCTAAAGCTATG5231663CATATTGTAGGTACATGTTCTATTTCTTTTCTCACATGTAA
chr1:5244219-5244229
CCTTGGAACTAAACCACCAATCAAAGAAAA5244219CACATGGTGGGACATGTGGCTCTAGCTGTATATGTAGCTGA
chr1:5245970-5245980
TTAGTGATCAAAGATCAGAGATTATTGTGG5245970CTCATTGTGGGTAGTGCTGTAAGACTCTGGTGAGCCTTAGC
chr1:5252714-5252723
TTTAGAGGAGCAGAAAGAAGCATGTGTGTT5252714CACA-TGTAGGTCCAGCTGAGTCTCAAAGGTGGAGTTTTTA
chr1:5258552-5258561
CGCTGTTCTGGCAGGACTGAGTCAATCCAG5258552CACATTG-AGGCCTTTGGCTTGCCATGCCTCACCTTCCAAA
chr1:5271544-5271553
TGGCAAGGATGTGGAGAAAGAGGAACTCCT5271544C-CATTGTTGGTGGGATTGTAAGGTGGTACAACCACTCTTG
chr1:5291100-5291110
GGCACATGCTGAGGAGTGGTATAGCTTGCT5291100CACATGGTAGGTTTATTTTTAGCCTTTTGAGAATTCTCCAT
chr1:5298865-5298874
CTTGAATTTAAGGCAATCAATCATATTTGA5298865C-CATTGTAGGTCCAGGCTCTCTTTTTCCTCGGAGTGGTTC
chr1:5328340-5328349
TTATCAAAGACAGACAGGCAGACAGGAGTG5328340CACA-TGTGGGCATGCAGGCATGCATGTGTGTGTGTATCAT
chr1:5335953-5335963
CCCAGGGACTAAACCACCAACCAAAGAGTA5335953CACATGGTGGGACCCATGACTTCAGCTGCATATGTAGCAGA
chr1:5343649-5343659
TTCATCAGGTTTGTCCAAGGAGATAAAACC5343649CACATTGTATGCATAAATGAAGAAAGGCTTTTAAGCACTTG
chr1:5343839-5343850
TTATGGTCTTAAGCTAATTGAATGAGTCCC5343839CACCATTGTAGGATAACCTGTTTCATTAAAGATATCATGATT
chr1:5348258-5348267
GGACTGATATATCAATCTCCTGTCAGCAAG5348258CAC-TTGTTGGCATCCAAAATAGTATCTGAGTTTGGTAACT
chr1:5357726-5357735
AGACAGATATATAAGGCTTCTGTCAGCAAG5357726CAC-TTGTTGGTATCCAAAATAGTGTCTGAGGTTGGTGACT
chr1:5359030-5359040
AAGGGAAGAGAAGTAGAGGGCAGCCACGGC5359030CACATTGGGGGGTAAGGGGAGAAGGAGAGCTAGAGGTAAGA
chr1:5372833-5372842
TCTTTGTCAAAAACCAAGTGCCTATACACC5372833CACA-TGTGGGGTTATATCTGGATCTTCAATTAGATTCCAT
chr1:5392297-5392307
ATTATTGCAAGGGTGTGAATGTGCTACATA5392297CACATTGTTGTCTTTGCCCAAATCACTAGATAAAGTTGAGT
chr1:5392467-5392477
AGTGTGGCTATCCTGGGGGAGATTGAGCAT5392467CACATTGTTGGTCCCCAAGCCTTGCCAGGCCTCTCCTGTAC
chr1:5404263-5404273
TACACACACACACACACACACACACACACA5404263CACAATGTGGGACATGTTTTTAAAAAAATCTCAATATTACA
chr1:5419027-5419037
TTGAGCTGGGGAATGTATTGAAAGTTCAGC5419027CACAGTGTGGGAGTCTGCTGCATGGCCCCATATATTTGTGG
chr1:5481365-5481374
ACTAGATTCTTGGATTTAGTTGGTAGATAG5481365C-CATTGTTGGACTAGCTGGACCAGAGCATGTAAGCCATTC
chr1:5498719-5498728
GCGTGGATGTGGAAAAAGAGGAACACTCCT5498719C-CATTGTTGGTGGGATTGCAGGCTTGTACAACCATTCTGG
chr1:5505782-5505791
GCGTGGATGTGGAGAAAGAGGAACACTCCT5505782C-CATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
chr1:5508230-5508239
TGCCCGATCCCCAAGAAATTTAGTTAAAAG5508230CA-ATTGTGGGTCAGCTGATATGGATATTAGTAACTGAATT
chr1:5524057-5524067
AAATTGGTCAGATACTCTTTCTTTGTTGGT5524057CACAATGTGGGTTAGGTATCTGGGTGACTGTCCCTCATAAA
chr1:5546926-5546935
GCAAGGATGTGGAGAAAGAGGAACACTCCT5546926C-CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTAG
chr1:5551364-5551373
GCAAGGATGTGGAGAAAGGCGAACACTCCT5551364C-CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
chr1:5557107-5557116
TTATGAATTGCAGGGTCTGATAGTACCCAG5557107CACA-TGTTGGGTAGTTCAGGTTGCATAGTAATGAAAGAAA
chr1:5622955-5622964
GCGAGGATGTGGAGAAAGAGGAACACTCCT5622955C-CATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
chr1:5661611-5661620
AATTTAGGAACCAGGTTAATGCTGCAAAAA5661611CACA-TGTGGGTAACTGTTTATTTGTTTGATTAACACTTAT
chr1:5665756-5665765
GCTCGTCTATTAGTTTGGCAGGTTTTTAAG5665756CAC-TTGTAGGTTAGAGACCTACCCTGTTCCTCAAAGCAAG
chr1:5714448-5714458
TCTACTTCAGTCTCCTGATTGCTTGGGTTA5714448CACATTGTACGTTGTGCTTAATAATTGTGAAAATTCTCTTA
chr1:5726583-5726593
TATTATAATTTATTTAAATTACTTTGCTTG5726583CACATTATGGGAGGGCATTTCAATTTCCTCTAACTTATTTT
chr1:5751501-5751512
TGCCTCACCTCCCCAAAAGATACCCAGAGC5751501CACATGTGTGGGTCTTATCAATACCCACGGGAGAAATCGGGT
chr1:5757471-5757480
GTACATGCACACATAAAACTAACAGAGGAT5757471CAC-TTGTGGGAGTACATTCTTTTCTTCCACCATGTGTATT
chr1:5765346-5765355
GCGAGGATGTGGAGAAAGAGGGACACTCCT5765346C-CATTGTTGGTGGGATTGCAAGCTTGTATAACCACTCTGG
chr1:5791850-5791860
AGCAGGACCCTTTTTCTAGAGATTACAATT5791850CACATTGTTAGAGACAACAGTGCCCTTCACTTGGAGCAGGG
chr1:5792791-5792801
CACTAATTTGTTTTGAGTGTTAATAATAAA5792791CACATTGTTAGTTTATGAAACAAATTATTTTAAATAATAGA
chr1:5806897-5806906
ATACATGTATTCAGGAGATAAAGGATGCCA5806897CACATT-TGGGAAAATGAAATCTCAGCTGAGAATATTCTGC
chr1:5811935-5811944
GCATGGATGTGGAGAAAGAGGAACACTCCT5811935C-CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
chr1:5814319-5814329
TCTGGAGATGGTCTCTACAGGTTCTCTCTC5814319CACTTTGTTGGGGATTTCAGCTAATGTCATCCCCATTGGGT
chr1:5852580-5852591
GGAACCTTACCTTTTCAGAGGGTTGAGCTC5852580CACAGTTGTGGGGGGACTCGGCAAACACTACAGCAGCAGAGT
chr1:5864180-5864189
CCCTCAGATTTTTGACAAAATTGTCAAAAA5864180CACA-TGTCGGAAAAAAAGGCAACCTGTTTAGTAAATGGTG
chr1:5878124-5878134
GGCAAAAGAGCTTCTTGCACATAAAGTTGG5878124CACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:5895738-5895747
GCGTGGATGTGGAGAAAGAGGAACACTCCT5895738C-CATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGG
chr1:5903496-5903506
CCATTGCCTTGGCATATTTTGCAGGCAGGA5903496CAAATTGTAGGTCAAAGATTTGTGGTTAGGTCGATGTTTGT
chr1:5925448-5925457
GCAAGGATGTGGAGAAAGAGGAACACTCCT5925448C-CATTGTTGGTCAGATTGCAAGCTTGTACAACCACTCTGG
chr1:5927042-5927051
TTTCCTGCAAAAGTTATTTAATCTCTGGTC5927042CACATTG-AGGAGGTAGTATGCACCAATTTTCCAAGATTAA
chr1:5932772-5932781
GCGAGGATGTGGAGAAAGGGGAACACTCCT5932772C-CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
chr1:5936815-5936824
CTGCTCTCTATTGTTATAAAAATCAAATCT5936815CACA-TGTAGGTTCCTAAATTCAATCTGTATGTCATAATCA
chr1:5976365-5976376
TGAATGCATGGTCAGCTATTTAATATGCAC5976365CACAGTTGTGGGAACCGTTTCTTACAGAGATTACTGTGGCTG
chr1:6051680-6051690
CCAAACATCCTGAGTTCAAATCCCAGCCAT6051680CACATTGTGGCTCACAACCTTTCATAATAAGATCTGACGCC
chr1:6056499-6056509
AAGAGGGATATTTCCTTTTGGTTTTTATGA6056499TACATTGTAGGGAAAATATTCTGCTTTCTAATAAAAATAAT
chr1:6060847-6060856
TGGATCATTGGTTCTTCCACTCATAGGCAG6060847C-CATTGTTGGATTATCTGGATTATCTGGATTATCTGGCAG
chr1:6068502-6068511
GCGAGGATGTGGAGAAAGAAGAACACTCCT6068502C-CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
chr1:6076366-6076375
ACCAACCTGTCTGTGCAGAGCCCAATGGCC6076366CACATT-TGGGTATCTAGGACTTGCTACGGTGGGAGTATTG
chr1:6085623-6085633
CAATGTCATCTCTAGCTGCCCAAGAGGCAG6085623CACATTGTTGTTCCTGTCACAAATCCCTTTGAGCATGTGCC
chr1:6103017-6103027
CTCAGGGACTAAACCACCAACCAAAGAAAA6103017CACATAGTGGGACTCATGGCTTTAGCTGCATATGTAGCAGA
chr1:6107624-6107634
CACCTTTGAAAATATTAAACCTTTAATGAA6107624CACATTTTGGGCTTAGCACCAGTGGAACTTAATTGTTTCAA
chr1:6117553-6117562
GCGAGGATGTGGAGAAAGGGGAACACTCCT6117553C-CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
chr1:6127076-6127086
TCAATTATTGACCAATGGGGAAGGGCCTAG6127076CCCATTGTGGGTTGTGACATCCTTGGGTCGATGACCCTGAA
chr1:6129228-6129238
CTTGATTTCAAATTCTCAACCTCAGTCTCT6129228CACATTCTTGGATTGCAGGTGTGTGCCACCCTATACTGGTC
chr1:6135355-6135365
TTGGTTTCATGTAAAAATGATCACATATAG6135355GACATTGTGGGTTAAATATGTTAAAAATATAATTTTGATTT
chr1:6173938-6173947
GCGAGGATGTGGAGAAAGAGGAACACTCCT6173938C-CATTGTTGGTGGGATTGCAAACTTGTACAAACAGTCTGG
chr1:6195361-6195370
GTGAGGATGTGGAGAAAGAGGAACACTCCT6195361C-CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
chr1:6237821-6237830
GCGAGGATGTGGAGAAAGAGGAACACTCCT6237821C-CATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
chr1:6266767-6266778
GAGTCCAACTCTGGTCCTGTATTTCATCTG6266767CACCATTGTGGGTGTTTTACAAATGTAACTGTTCCCTGTGTC
chr1:6274815-6274824
TGGAATGAATGACAGTCCAGAAATGGACAG6274815CACATT-TGGGATCTGGATCTTGATGCAGATCTTGAGGCAG
chr1:6321510-6321520
TGAAGAATTTGATCCAATATTGAGAGAGAT6321510CAGATTGTAGGAGTGGGAAATTTTCTCCAAACTGACTTACA
chr1:6344578-6344587
GTGCTGATAAACTACTCTAAAAACAGCTGG6344578C-CATTGTTGGGTTTTTTTTTGTTGTTTGTTTGTTTGTTTG
chr1:6353773-6353783
TGGGTAAGAGCAAACACGGTAAACCATTCA6353773CACATTATAGGACAAAACACAAAGATGTTAATGTCTAAAGA
chr1:6360120-6360129
CAAGTGGAAGGGAATGTAGATTTTGGGTGA6360120CACATT-TAGGAAGCATGCATTACTGCCCATCTGCTACTCT
chr1:6371056-6371065
GCGAGGATGTGGAGAAAGGGGAACACTCCT6371056C-CATTGTTGGTGGGATTGCAAACTTGTACAACCACTCTGG
chr1:6416612-6416621
TGGAGTATGTGTCCTTCTTACCGGTTGGAA6416612CACATT-TTGGATATATGCCCAGGAGAGGTATTGCAGGATC
chr1:6434128-6434137
TTTTATCTTTGCCTGATGGGATTTTGTTTG6434128CACATT-TTGGATTCTATGGTAAAAAACAAACTGCCATTCC
chr1:6446194-6446203
AAATATATCACGTTTTCTATATTCATTCTT6446194C-CATTGTGGGATATCTTGGTTGTTTCCAGCTTCTCACTAT
chr1:6458429-6458439
TCAGCAATTCCACACTTTTGAATAATGCCA6458429CACCTTGTGGGCTCATTGGGGGCCATTGGCATTCAAAACAC
chr1:6483699-6483708
CTTGGCTTGCTGGTACAGCTAGCTGTGCAA6483699CAC-TTGTGGGTCTCGAGTCTTCACTGATCTTTACTTCCCT
chr1:6504153-6504163
GGCAAAAGAGCTTCTTGCACATAAAGTTGA6504153CACATAGTAGGACTATTGGACATTCCCTGTGGTAAGACCTT
chr1:6511073-6511083
GGCCACCACCTTCTCAATGCTGATCATCTC6511073CACAGTGTAGGCCATCATCAGAGCATCCACCATTGCCATGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://crispr.dbcls.jp/detail/en/mm39/1/CACATTGTNGG
lang : en | db : mm39 | k : 1 | strand : | nogap : | query_string : CACATTGTNGG | format : html | download : | debug : 

0.006 | 0.006 | search_start;
0.541 | 0.535 | search_plus_done; http://172.18.8.138:28851/match?q=CACATTGTNGG&k=1&no_gap=0&offset=0&limit=200
1.057 | 0.516 | search_minus_done; http://172.18.8.138:28851/match?q=CCNACAATGTG&k=1&no_gap=0&offset=0&limit=0
1.057 | 0.000 | cgi_end;

CRISPRdirect | DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use CRISPRdirect in your work, please cite:
Naito Y, Hino K, Bono H, Ui-Tei K. (2015)
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.
Bioinformatics, 31, 1120-1123. [Full Text]