— Rational design of CRISPR/Cas target.
2025-06-15 04:25:26, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
GAGTGGCACTATTAGGCCTTGCTGGAGTTG3068737 ATGTG ACC TTGTTGG
GCTAGTTCTGGTTTCCTGGCATGTGAGAGT3276403 AA GTCACATG GTAGG
AAAACAACCTGGTCTTTCTAAAAATTATAC3316295 ATGTCAA ATTGTAA G
CTTTCAGTTTGTTTGTCAGGACCCAATACT3365615 T TG-CACATTGTAGG
TCCCAGTGGAAGTGCTACATATATTTAGCT3423590 ATGTCACA-TGTTGT
ATGCTTCACTGGGGTGCATTGTGAGAAGTT3468478 T TGTCAC-TTGTAGG
GAGGAGAGGCTTTGGTCCTGTGAAGGCTCA3509883 ATGTT C CATTGTAGG
CAAAAGACACATATTTAGTTCCCAGGACCT3532914 ATGTCACATTG-AGT
GATTTCTCATTCTCAATTTTGATATCAGAG3625569 A-GTCAG ATTGTTGG
ATCTGGTATAATCACTGAGCTAAAGTCAAG3664316 ATGTCAC CATTGTTGT
CTGAGTTTAACACCACGTGCTTTTCAGAAA3739019 ATGTCA-ATC TGTAGG
GAGCCTGACCCTCAATTTTTTACCTGATGA3748410 ATGTCACATTGTCC A
AGGAGAGGCCCTTGATCCTGTGAAGGCTCA3748897 ATGTCT CAG TGTAGG
GCAAACTTATTCATTCATTTCTAGAAAAAC3865924 ATGTCACA-TGTCA G
CTGAGTCTTGGAGGGAAGGATGTGATAGAG4058917 ATGTCT CATT-TAGG
AGGAGAGGCCCTTGGGCCTGAGAAGGCTTG4076439 ATGTCC CAG TGTAGG
AGGTTAGCTGCCCACAGACAAATTGTGTTC4082275 ATGTCAG CAC TGTTGG
AAGCTGTCATCTAGCATACTAATTTGAGCC4266089 ATGTCACATT-TTGC
GAATGTGGTGCAACGTCATAGAAGAAAGTG4454709 ATGT--CATTGTGGG
CTCGCCTTTTTCCTACATGCAGTTTTGTGA4588442 ATGT-ACATTGC AGG
GCTGAAAGTATTATAAATGCTCAAAGGGCA4608206 ATGA CA-ATTGTGGG
AGAGGACACCTTTAATGAATGGTTTCTCTC4683143 ATGTCACC A TGTGGG
TATTAATATTTGATTCATGATTAGTGTTAG4772407 ATGTCACATG GTAA G
GGAGAAGTAGCAAAAACCTGAAAGACTCAA4920535 ATGTCACAA -GTGGG
GGTTCCTATATGTGATTTTAAGCTAAAGCT5231660 ATG-CAT ATTGTAGG
GAAGAAAGGGGAGACTGAAAAGAGTGGGGT5286543 ATGTCACAG -GTAGG
AGAGTGTGGCTATCCTGGGGGAGATTGAGC5392465 A--TCACATTGTTGG
CTGCCACTAAAATGCCCACCTGTGGACATG5657817 ATGT-ACATTA TGGG
TTTAGCAGGACCCTTTTTCTAGAGATTACA5791847 AT-TCACATTGTTA G
CACTGGCAAAAGAGCTTCTTGCACATAAAG5878120 T TGG CACATTGTAGG
AAGTCTGCTCTCTATTGTTATAAAAATCAA5936811 ATC TCACA-TGTAGG
TTTAAAGAGGGATATTTCCTTTTGGTTTTT6056495 ATGA T ACATTGTAGG
AAAGGAAGTTGAAACAAAAGAGAAGCGCTG6176375 ATGT--CATTGTAGG
ATTAGGAGGCATAGCCTTGTTACAGTAGGT6206547 ATGTC-C-TTGTTGG
TCTGTGGGCCAAATCAGCACTTTCCTCCCC6468329 ATGTCAC-TT-TTGG
GTTTAGGCCATCTTGCCTTGATTGAGAATT6639427 ATGTCACT ATTGG TGG
AGCTCTGCCTTTCTGTTTTGCTTATGGCAA6665198 ATGTT ACATTGTTGC
GTTTTTATATTTATTAGCCATAAATAAGAA6759343 ATG-CACATT-TTGG
ATAGCAGGCAACTGCCATGCACTAAGCACT7011912 AT-TA ACATTGTTGG
CGATTGCACTGGGGAATATGTTGAAGGTTC7135352 A-GTCACAG TGTGGG
ATTGGAAAGTGTGGTCTTGTTGGAGCAGGC7293048 ATGTCAC--TGTGGG
TAAAGAGTTCTGTTTTTAGTCTCTGAAACA7349824 ATGTCT CAA TGTAGG
CATTATATTTTTCTTAATAGAATTTTAGTT7545600 ATGTCA ACATTGTAGG
CTGCTCTCAACTTGCTGTTAGATGGACAGA7614918 ATT TCACATTGTAGT
GTATACTCTATACATTGAAGAGTAGTAATT7762359 AT-TCACATT-TTGG
TGATTAAAAGCAAATTATGGGAAGGAGTTT7823035 ATGTCACA ATTT TTGG
AATAAATTAGAGAAACCTTGGAGAGATAAT7830639 ATGTCA-ATT-TAGG
TTGTCTCAACAAGTGAATAAATAACATTAA7834175 ATGTCACATTC TGT G
TAGACTAAAAAGGGAAAGGCTATTTTCAGG7839583 ATGTCA ACATTGA GGG
TCCCATTGACTCCACTGACAATATTCTCCC7841884 ATC TCACATTGTGGC
GCCTGCAAGGGTTGCTTAAGAGCACATACC7847172 A-GTC-CATTGTGGG
AGAAGAAGCCCTTGTTCCTGTGAAAGCTTG7871981 ATGA CACAG TGTAGG
ATACTGACTTGTTTAAATGCTGAATTTCAG7924456 ATGTCAG CATTGTTGG
GATTATTAGGAGGTGTGGATTTTGGAGTAG7980669 ATGTG ACC TTGTTGG
TTAGAAGGTCTTCTATTACTGTTCATTCCA8020552 C TGTCAC-TTGTGGG
GATGTAAAGGAAAATGTAGGCATTGAACAG8024449 ATT TCACA-TGTAGG
ATCATATCTTAGTTTCTATCTGTGTTACTA8051274 ATGTCACATA TGTAGA
TTGTCAAAGATCAAGTGACTATAAGTGTAT8303473 ATGT-ACATTC TTGG
AAATGATCCAATAGTTCAGAAAGTCACTCT8394447 ATGTCACATTGTTA G
ATTTCCATGCAGTGCCTAGGATGGTTTATT8417455 ATGTCACC TTGA TTGG
AGTTGTTTATATATTTTAGATATTAGCCCT8506725 ATGTCAG A-TGTGGG
ATTTGGAGGTGTGGACTTGTTCAGGTAGGT8644082 ATGTCAC--TGTGGG
TGCAACAGAATTTTCTCAAATATTTAATAC8672972 ATGTCACA-TGA TGG
GGGGTAGTCACACTAACAGAGACGCAAACT8733190 A-GT-ACATTGTGGG
CTTATAGGACACCATGAGAGCAGTTCTAAG8870429 A-GTCACATTGTAGC
TAGAGTAGGTGTAGCTTTGTTGGAGGAGGT8871054 ATGTCAC--TGTGGG
GAGTGTAACCACTCCTTCCACAACTGCTGC8927251 ATGTC-C-TTGTGGG
TTATTATTAGTTGAATAATGATGTGTTTGT8989895 G TGTCACATTGC AGG
TCCATCAGCAGAATAAACAAGAGACTGTGT9029999 AT-TCACATG GTGGG
CATGTTTAAATTTAATAAGTATACATGTGT9298581 ATGTCA-ATTT TAGG
TTTGTTCCCCCTTCTAAGAAGGACTAAAGC9299846 AT-TCACATT-TTGG
AGAAGAGGCCCTTGGGTCTGAGGATGTTCA9397994 ATGC CC CATTGTTGG
AACAAACCAAGCAGAGACACTTGTACACCC9407975 ATGT-ACATTGTGGC
GCTAATAAGATATCATCCAAGCAATGTATT9496447 ATGT-ACATTA TTGG
AATTGGGTAAGGAGAATGTGATTTAATTAA9542340 ATGTCAT T TTGTTGG
CTAATGAAAGAATAATTTAAAATGCGGCAC9591634 ATG-CACATTGTGGA
TTTAATTGATTATTTCTTTCTTTTTATCTT9629559 ATGT-ACATTGG TGG
GAGAGCCCTTGACTGCTCATAGTTCTAGTC9633977 ATGTCAG AG TGTTGG
AGTATATAGCATATTTATAGGTTTGGATAT9652969 ATT T-ACATTGTTGG
TATTCTTGACTCTGCTAGGATTACAGACAC9800453 ATGC CAC CATTGTTGG
GTTTTGCTGTACAGATGGTTGTGAGCCTTC9824815 ATGT--CATTGTCGG
TCACTTGACTTGAAAACTTCTCATTTTTGG9844050 AG GTCACATA GTGGG
ATGAATCTTGCTGTTTCTGGTTTAAACAGC10024713 ATT TCACA-TGTAGG
CTTGTCTTTAAAAGCCCTAAGAGAGTGAGT10208252 ATGTCACAG -GTAGG
CACTACACGCCAACAGATTATCATATACTC10278121 A-GTCACATTGA TGG
AGCTGAGCTTAAATCCCTAGAGCCCACAAA10278861 ATGTCAC-TTGTCT G
AAATTAGATTTTAGATTTTAAAGCAGATTT10350247 ATGT-ACATTT TTGG
TCACATCTTTGATATTCCATCACCTCAGTA10466526 T TGTCACATTG-AGG
CTTGTAGTCCACATTTGAGTAAAGATTCAA10542909 AG GTCACATTGG TGG
AACCAGCTTCATGACCTGAATCATGAAGTG10548079 ATGTCACAA TG-GGG
ACATCGGTTATATCACTTCATGGATCTCTT10553640 ATGTC-C-TTGTGGG
GGTGTGTGTGTGTGTGTATGTGTAGGTCAA10556468 ATGTCA-ATT-TGGG
AGGGGAGACTCTTGGTCCTATGGAGGTTTG10629364 ATGTCC CAA TGTAGG
TGGGGGTGTGGTGAGGTGTGGGGGAAGGGA10725061 ATGTC-CA-TGTGGG
GGAAAATTAAAGTGCATATTCTTTACTCAA10741682 ATGTCACT TT-TCGG
AGAAGATAGGAGAAGATGGAAAAATCTCTT10796856 ATGT TCACA-TGTTGG
CACTGGCAAAAGAGCTTCTTGCACATAAAG10803636 T TGG CACATTGTAGG
ACCCCAGCTCCATCTGGGCACAGAAAGGTT10864842 ATGA CAG CATTGTTGG
TGCTAGTAGACAGAACTCTCCCTGTCCCTT10873695 ATGTCAG CATTGTGA G
TTCATCTTACACTTTCCACATTCAGCTTAC10901134 ATGTC CACATTGTTGT
TGAGCCCCAAGATGAGGTTATTTCATGAAG10910988 ATA TCACATT-TAGG
TCTGGAAGTTGAGTGTGTGGGAATATTTAG10927245 ATGTCACAG TGA TTGG
TTCCTTGTCTTGCGAATGCAGATTACACAC10969434 ATGTCACAG TGA AGG
GTGGAATGTAGATGTGTAAAACCATACCCC10990947 ATGTCC CATG GTCGG
CTCTGATCCCTGAGGACAGGACTGATACAG11114372 ATGTCC CATT-TAGG
GCAAAAGAAAACACAGGTAAGCTTATAAAA11168835 AT-TCACATT-TTGG
CAGGAAGAAACTACCATGCATTGTCTCTCA11191268 ATGTC-CATT-TTGG
TCAAAACATGCACTTATGTTCTAAAAAAAA11252065 ATGTCACATTGC AGC
TAGTCTCAACAAGTGAATAAATAACATTAA11291492 ATGTCACATTC TGT G
TAATAAATGCCATTCCATCAGAATATTAAT11358117 ATGTCAC CATTGC GGG
AGAGGCCAGCCAGTGGAATACTTGTGTAGA11394011 AT-TCACAT TTGTGGG
CTTCACTTTGTACCTAAAATATGAGCTGAG11661207 ATGTCAC-TTGTGGA
TGCATATATGTGTCCAACTCACAAAATTGT11677206 ATA T-ACATTGTAGG
TTGGCATGTAGTAAGCTGATATTCTCCTTA11722125 ATGT-ACATTGTGA G
AGGGGTCTACATGCTTTGAAGAGCTGTACT11724095 C TGTCACT TTGTGGG
ATATTTTTTGAGAGAACCTACATCCAGAAC11771455 AA GTCACATT-TGGG
CCCAGGCAAATGCGGCAGAGGCTGGCCGCA11800186 ATA TCAT ATTGTTGG
AAAATCCTCTAATCTCCCAGCATATGGGGA11859219 ATGTCACATG GA GGG
TAGATATAATGTAAATATGTCTGCCTTTCT11895930 ATGTCACATTGTCGT
CTTAGGAGATGTGGCCTTGTTGTAGTAGGT12061857 ATG--ACATTGTTGG
TGTAGTAGGTATGACATTGTTGGAGGAAAT12061877 ATGTCAC--TGTAGG
TCCCTCATAGTTAGAGAATGAATTCTCTGC12162437 ATGTA ACATTC TTGG
ATATACCTAGAGCCAAGCAACACTTTCAGA12173136 ATGTCACT TTGTCA G
AGGGGAAGCCATTGATTCTGGGAAGGCTCG12299300 ATGA CC CATTGTAGG
ACTGCACTCATCTCAATCCACAACTGCGCC12570514 A-GTCA-ATTGTGGG
GGAGGCAGGAGTTTAGATTTCAAAATGTAG12762275 ATGTCACATT-TCA G
GTGACACACAATGCAGCTTTGGTGGACTTC12820184 ATGTCACA-TGA TGG
ACCAGTCAATCCAGGGGTTCCAAATGGAAA12913161 ATGTCACATTC TGT G
GTCAGAAGGTAAACATTTTGAAGTTTGGAA12965260 ATGTCACA-TGTTGA
CTGAGTGGAGTAAAGTAGCAAGTGAGACTT12982200 ATT TG ACATTGTTGG
CTGCAAGGTGGCACTCGACCTGCTGCATGC12987864 ATGTG CACA-TGTGGG
TTAGCCCATAGGGAGTGGCACTATTAGGAG13025851 ATGTG ACC TTGTTGG
TTAGGGTTCTAGGACAAGCCATCTAGAACG13065666 ATC TA ACATTGTAGG
GTCTTCAGAAAACCTATCCTATTAGTGGGC13101276 ATG--ACATTGTGGG
AATGATTTTAAAATGGCCTGGCAAGGGCCC13104302 A-GTC-CATTGTGGG
CAAAACCAGGACCTTGGTGTTTATACCCAC13134269 ATGG A ACATTGTGGG
CCTGCTCTTCTGTTTGTCCTCTCTGCTGTT13253836 ATA TCACATTGA AGG
AAGGTTCATAGAACCTATTCCTAGGGTTAT13271776 ATGTCACATA GTGGA
CCTCAGTGTGCACAGGATTCTCTCCATTCC13351427 AT-TC-CATTGTGGG
AAATAACAGAAGTTTGCGTAAGAGTAGAAG13401228 ATGT-AT ATTGTAGG
TGGCTGTTTCTGTCTGGAGTAAAGGGAGTT13468168 AA GTCACATTGTTT G
GTAATGGGGAGGTGTGATTTTATACATTTT13559408 AT-TCACAA TGTTGG
GCCCTGTCTTCCAGAATACTTACTTCAGAT13740750 ATGT-ACA-TGTGGG
CATATTTAATTCTATTTCATTCTGAGTAAT13920988 AT-TC-CATTGTAGG
CATGAACTGGTAGGCTTCATGCAAGTGTGT13941165 T TGTCACATTC TTGG
TCCAAGACCATGGCCTTCCAACTCACTGTA14058286 ATGTCACATTGC TAGG
ACTATTGGGTATGACCTTGTTGGAGGAAGT14118756 ATGTCAC--TGTGGG
AAGAGTGTTCTGTGTTCATAGAATCTACAT14231504 C TC TCACATTGTGGG
GGTGTTAATGGTTTGAATGTGTCTTCCAAC14248717 AT-TCACA-TGTTGG
TTTAGGTTATGACTTGCTACTTTCAGTTAA14327212 ATGA CACATTT TTGG
TATGTTTTTTAAAACCTGAGCTAAAAGATC14372016 ATGTCA-ATTG-GGG
GTTTGGCTACAGCCTGCTTGCAAGCAGGAT14394577 ATGTA ACATTGTGGA
TCCTGGCCTCCACCAGTGTCCCAACATCCT14406222 A-GTCA-ATTGTTGG
ATGTTTGGAGCGTAGATGTTAATAATTAAA14673589 ATGTCAT C TTGTTGG
CTAGCTACAGTAGGGATTAATTCTAAACTC14691445 ATGTCACATT-TAGT
AGGAGATGCCCTTGGGCCTGTCGGTGTTCG14813064 ATGC CACAG TGTAGG
TATATCTAAAAATGTTGCAAATATGAGAAA14870259 ATGTCC CATTGTGT G
AGAAAGGAAGCTTGCTTCTTGTTCAGGAGG14963497 ATGTCAG CATTGTAGC
GTGTGATAAGGCAGTCATCAGAATCCGGTC15021817 ATT TCACATTGTCT G
GAAGTACTTTGTCCGACAAAGGCTAGATGG15110619 ATGTCC CAG TGTAGG
ATTTTGAACAGCTTTGTAATAAAAAACTCC15160689 ATGT-ACA-TGTGGG
TCCCACTATGTCACTGTGACTATGCAGGCT15436316 ATGTCAC--TGTGGG
TGAGCATTTTCAGGAGGGGGTATGATATAG15465790 ATGTCT CA-TGTAGG
TTGATCACAAAGGTCTCCTTACTTGCTGTT15524006 G TGTC-CATTGTGGG
AGAGATCTTAGATTTCATTACTCTAGAGAA15606367 ATGTCC CATT-TTGG
TTCTACTTATAAACAAATAGTTTCTATGTT15639273 ATG-C-CATTGTTGG
GATGTCTACTTACGAAACAAAAAATGTTCA15685997 AA GTC-CATTGTTGG
GTCTTAGGAAACAATCTTTGAAAAGATCAG15695693 ATGTCACATA TGG AGG
TATAGGATTTCTAAAGAAAAGATGCCTTTT15753985 ATGTA ACA-TGTAGG
TTTTGATGGGTGATTGATATAGGAAGACCC15823150 A-GTC-CATTGTGGG
GCTGTCAGGTATCTCTGTACATAGGGCATT15841835 AT-TCACATTG-GGG
TATTCCACAGAACTGTTTCTTTGTGTAAGA16162210 ATGTT -CATTGTTGG
GAAGGGTGGAAAGATTTCTTTGAAAAGTTT16202476 AT-TCACATTGTAGA
TGGATTAAATATTGTTTCAGGCAGAAGACA16296779 ATGTC-CATTGA AGG
ATTGATGAATTATAACAAATATAGATTAAT16369347 AT-TCA-ATTGTTGG
TTGATGTCTTTTTTGACTTCCACAGGCATG16381287 ATG-CACATTGG GGG
AAAGATTAAAGATATACAACAGAACACGAC16446293 ATGA CAA ATTGTGGG
GAGAACCATGGCTCTAAGCGCCTCTTGTGT16615240 ATGT--CATTGTGGG
TACCAAAAAAGAAAAAAATCCAGAACTGCT16630073 AA A TCACATTGTAGG
GACTGGCAAGGGGGCCAGGGAACTGAGTGC16886937 ATGTCC CAA TGTGGG
AGAGAGGCCCATTGGACTTGCAAACTTTAT16947285 ATGTCC CATTA TAGG
GTCAGTTGAACTATTTTATAAGGATTAGGT17003370 ATGTC-C-TTGTAGG
TGTGCTTACAGTTTCAGAGAGTTAGAGTCC17061710 ATGA C-CATTGTGGG
GTGTTGGATCTCCTGGAGGTATGAGTGGGT17069584 ATGTG ACA-TGTGGG
TATACTTACAGGTAAAGTGTTTTCTTACCC17139015 ATC -CACATTGTGGG
CAAAACGTTGAAAGGCGAACCAATGCAAGA17172770 G TGTCT CATTGTGGG
AATAGCTAAGTAGTCCTCCATTATGTAAAT17179666 ATA TCACATTGTCT G
CAGAAACCATAGCTTTTTCTTACATGGCGT17228017 AT-T-ACATTGTTGG
AGGATGAAATAAGAAGACAGCCCTGAAGAG17312977 ATT TCACATTC TGGG
GGGACTGCCTTATCAGGCCTCCGTGGAATG17526538 ATGTCC CA-TGTTGG
TTTTTCTCTTTCTCTTGTTCCAGGTAATTT17588658 ATGG CACATTGTGC G
TTGGTGAGAATGTGGATAAAGAGGAACACA17628158 AT-TC-CATTGTTGG
GTTCTCCAGGAGAGCGCTTGGTAGGGTTAA17798250 AT-TCACA-TGTTGG
TGGAACCTATAATAGGACAACCCAAGAAAA17915292 AT-TCA-ATTGTGGG
AATGGAAGCCATTGGACACATGAAGGCTCT17935625 ATGTCT CAG TGTAGG
TCTCAACAACAAGTTAATAAATAACATTAA18006499 ATGTCACATTC TGT G
TTTTTTTTAGTTCCATCCATTTGCCTGCAA18038953 ATGTCACAA TGTCA G
AGGCAGGTGGGTGGAGGGTTTCCTAAGACA18147634 G TT TCACATTGTAGG
GGGCACTTTTGGTTGCTGGTTTCTGGCACC18168517 AT-TCA-ATTGTGGG
ATGAATTTGAACATCCGGATTCTCAAATGC18204034 ATGTCACA-TGTCT G
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/2/ATGTCACATTGTNGGen |
db : mm39 |
k : 2 |
strand : ATGTCACATTGTNGG |
format : html |
download :
0.006 | 0.006 | search_start;
0.086 | 0.080 | search_plus_done; http://172.18.8.138:28851/match?q=ATGTCACATTGTNGG&k=2&no_gap=0&offset=0&limit=200
0.123 | 0.037 | search_minus_done; http://172.18.8.138:28851/match?q=CCNACAATGTGACAT&k=2&no_gap=0&offset=0&limit=0
0.123 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.