— Rational design of CRISPR/Cas target.
2025-07-18 06:50:45, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
TTATGGAGCGACTACTCAGCCAGGGCCGAG4422682 GGCGCCTGCGG
CATCACCACGGGCACCGCGAGGGGGGCGCT22031838 GGCGCCTGCGG
CCATACGTGTGATTCAAGGACCGTGGCCCA33583060 GGCGCCTGAGG
GGCTGAGCCCGAGAGCTGCGCGCGGGCTGG33947085 GGCGCCTGCGG
GTATCCAAGCTTCGCATAGATGGTCATATA37035604 GGCGCCTGTGG
ACGCTGAACCAGGAGCAAGATGCCTCTTGA39216634 GGCGCCTGTGG
GGCGGCGGGGGCCCCGGCGCGCAGCGCCTC58432738 GGCGCCTGTGG
CACGCGCGGTACCAGCCCCACGCGCGGCAC59952697 GGCGCCTGGGG
CTGGCCAAAAGACAGCTGTCTTGGAGCACA62721777 GGCGCCTGTGG
CAGCAGGTAAAGAAACTCTCCCTGGGACCT66658747 GGCGCCTGTGG
GCCCCGACGTCCTCGGGCACTCCCCGACTG74430565 GGCGCCTGGGG
CCTTTTCTGCCATGGTTCAGGCCTACAGCT75536586 GGCGCCTGGGG
AAGTAGAACAAAGTCATGTTGGATTTTCTG79868484 GGCGCCTGTGG
ATGAGGGTTAAGGTTCCCTAGGTCTAGAGT85117103 GGCGCCTGCGG
ATCACTAGCTGGATCAAGTATTCAAGTACA89226083 GGCGCCTGTGG
GGTGGTGGAGGTATAGGGTAAAAAGTAGGT92840923 GGCGCCTGAGG
TGATAGTGGTCACCTCCCTGGTAGTGCGCT92910738 GGCGCCTGGGG
CAACAGCTGCAGCAAGGGCTTTGGGAAGCA93607082 GGCGCCTGAGG
CCAGTGATCCTAAGACCATGGGCATTCTAG107946574 GGCGCCTGTGG
ACTTCCCAAGTGGTTCCCTAGGCTCAGGGT118072458 GGCGCCTGCGG
GTCTGCCCGGCCTGAGAGGTTTGTGGCACA130528087 GGCGCCTGCGG
GTCTGCCCGGCCTGAGAGGTTTGTGGCACA130528699 GGCGCCTGCGG
CCCCTGCCTCCCCAGAGCTGATCAGGAGAG132120104 GGCGCCTGGGG
GACATAGATATTTAAATAGCTTAATATTCG137503953 GGCGCCTGCGG
TGCTGGGGTACATATAAGCAGGGCTCCCTG164291994 GGCGCCTGGGG
TCTGCTCGGAAGGCCAGGTCCACTGTGGCT165871049 GGCGCCTGTGG
TCTATGCAGTACTTGAAGAGGCCAGAAGAG180602422 GGCGCCTGAGG
TTCAGATCTGTGAGCTCACTGCTCAGCAGA183342684 GGCGCCTGGGG
CCTGTCTCACAAAGTGGGAGGGTGAGGACT189670277 GGCGCCTGAGG
TGCTCTGTTTGCCAGCTTATCACCAACTCA28412985 GGCGCCTGGGG
CTTGGCAGAAATAGCTCTGAGCTTCTGCCT28489634 GGCGCCTGTGG
TTCCACTAGGGGTCGACATTCTCTCACCAA30914849 GGCGCCTGGGG
ACCCGAAGGTGCGGCGGCGTGTGGGAGACC31578468 GGCGCCTGTGG
AAGTCATTCCAGGATGAGTCCACCCAGAGA31793817 GGCGCCTGTGG
AAGGTGGGGGAGAAGGCTGGCCAGGCCACA32545834 GGCGCCTGGGG
CCCCAGCATACCCACCTGCTGCAAGGCTGT33925247 GGCGCCTGAGG
TGCTGAAGGCACAAGTTCCTCTCCTCAAAA34618864 GGCGCCTGGGG
TCGCAGCGGCCGGGTCCGCTCCACAGCCAT34716078 GGCGCCTGCGG
TGGATGTGTGTGTGCACCACTCACAAGTCT34799402 GGCGCCTGTGG
CTCTGCTGCCCTGGACTCAGTCAGAGGAGT48164282 GGCGCCTGTGG
ATGAGGGTTATGGTTCCCTAGGCTCAGGGT55674492 GGCGCCTGCGG
TGATTAGCCCGTGCTCCGCTGCCCGCTTTC59535812 GGCGCCTGTGG
GCTGGCTCCTAGAGGCAGAAAGCCGGTCCC69416380 GGCGCCTGAGG
GCCACGGAGCGGGCCCCGGCCAGAGATGCG69692230 GGCGCCTGGGG
GAAGAGCAATCGAGCCTGGATGCCAGGGAT70765376 GGCGCCTGTGG
TTTTTTGTATTCAGAGGGATGCCTCCCCTT72072350 GGCGCCTGTGG
TTTGGTTGTTGCCGGCTGGCCTTATGCCCT72179771 GGCGCCTGGGG
AAGATATCTGGGAGCCAGGAAATAGAGTCA72834186 GGCGCCTGGGG
TGCTATTAAGTCTGCCCTGGTGTGCCCTGG76518671 GGCGCCTGGGG
CACACAGTCACCCGTGCGAAGGCTCCCGCC89350391 GGCGCCTGTGG
GGGCAGCTGTCTAGATGGCACTGTGACACT90911675 GGCGCCTGAGG
CGGAAGATCCTTGGGGACAGACAGCACTTG93080093 GGCGCCTGTGG
AGCACCCTGCAGTTTGATAGATCCGCAACT93240037 GGCGCCTGAGG
GGGCCTCGGCTCGGACGTCAGGAGAGCGGC104647264 GGCGCCTGCGG
TCAGAAGGAAGAGCAGAAACAATGGCCTTA109832500 GGCGCCTGGGG
GGGAAGCATCCCTACTCGGCTCTGCGCCGC115890948 GGCGCCTGCGG
AGTAGCGAGAACTGGGGTGACTGGAGGAAT119006028 GGCGCCTGTGG
TCTCAGCAAGCGGTGAGTCTGTCAGGAGGG120459770 GGCGCCTGAGG
AACTAGCAGTGGAAATGTAATTAGCCACTT125818067 GGCGCCTGTGG
GTTGAGCCAGGGAGTGGGTGGCCATGACCT129857491 GGCGCCTGAGG
GGGTCACGCCGCTGCAGGCCACTACACCGT131021409 GGCGCCTGCGG
GGAAGTGAGAGAAACTGGGGCAAATTCAGG132607540 GGCGCCTGTGG
ATGAGGGTTGTGGTTCCCTAGGCTCAGGGT138406983 GGCGCCTGCGG
GCCTGATATCTGCCAGCTGGCGCCGACAGC151753431 GGCGCCTGAGG
GCCGGGCGCGGTGCACTAGGCGCGGGTCGG154411455 GGCGCCTGCGG
CCCAGGAGCCCTAAGGTGAGCTTCTTTAGA155873228 GGCGCCTGAGG
GCTTTCATTACACCAGACTCTCACCTGGCA157310578 GGCGCCTGGGG
AGTAAAGTCCCAGTCATCTTCCTGAGTTCT160070134 GGCGCCTGCGG
AATCATTGAGGTGAGAAGGAAACACTGCCC165709675 GGCGCCTGGGG
GTCCACCACAGTGGGGAAGGCATGGAGGCA166141215 GGCGCCTGGGG
CATCTGGGCCTGAACTACATCTGGCAGGAG168049473 GGCGCCTGGGG
AGGTTGTTGTTTCTCTGAGTGCCACACCTT168967772 GGCGCCTGGGG
ACTATCTCAAAGGAGGTGTATGTGAGGACT172429045 GGCGCCTGAGG
GACAAGCCAAGGAGGAGAAGTGTCTACACA174488956 GGCGCCTGAGG
TTCTGAGAAGTCCCTGTGGGTCAGACTGGA174575629 GGCGCCTGAGG
GCTGGAAGCAGTCTTGGCACTGACAGCCTT181213242 GGCGCCTGAGG
ATGAGGGTTGTGGTTCCCTAGGCTCAGGGT3322767 GGCGCCTGCGG
TCTTTCTCCACATTATCTCCAAGATGTGTT4492421 GGCGCCTGAGG
GACAAGGAGGGTAGTGGCTGCCAGAGACGG8869000 GGCGCCTGTGG
GAAGAAGAATTAAATAAATGAGTTTCTTCA15348377 GGCGCCTGAGG
ATGAGGGTTGTGGTTCCCTAGGCTCAGGGT16288327 GGCGCCTGCGG
ATGAGGGTTATGGTTCCCTAGGCTCAGGGT20689540 GGCGCCTGCGG
GTGGCACCATGCTCACAGCTCCCATCCAGA27648123 GGCGCCTGAGG
CAGGACACCAGTGGTTTCCAGATAGCTATG35450857 GGCGCCTGGGG
TGAGGAAAGCGCGGGCAGCCGCGGGGCTGA37474681 GGCGCCTGAGG
TCAATGATCCCAAGATCCTGGGTGTGCTAG45908284 GGCGCCTGTGG
TATATCTGACATTTTCATGAAATACTGAAA48443992 GGCGCCTGTGG
TTGTGCAGACAAAGGGGAGGAAGAATTGTA78426415 GGCGCCTGAGG
AGAAGGCCTGTCTCAAAAAACAATGTGGAT82450413 GGCGCCTGAGG
GCTACAGCTATAGCTTCGGTCCAGGTGGCT87658817 GGCGCCTGGGG
TCTGGAGAGGCTAAGGCATGATGGGAAGTG87706103 GGCGCCTGAGG
CTTGGCTCCAAGCCCCGCCCCTCGATCCAA87904752 GGCGCCTGGGG
CCTGCCTTGTCTAGTGCCTTTCTCCAGCCA87916082 GGCGCCTGTGG
GCAACCTGAAGCTGGCCAATCCTGCTGGGG89329384 GGCGCCTGGGG
CAAAGCAGCCTCAGCTCTTAACCAACAGGG93026615 GGCGCCTGTGG
ATGAGGGTTATGGTTCCCTAGGCTCAGGGT96273899 GGCGCCTGCGG
GAGGGCAGCTATGGGCTGGCTACCCAGGCA100763856 GGCGCCTGAGG
CATATCTTTATGAGAACTTTATAATCTAGG102851361 GGCGCCTGTGG
CCTGACTGGATCTGCAGCGGCTGAGCAGCA103661560 GGCGCCTGGGG
GCTCAGGAGGTGCTGAAGTGTTTCCTGTCT105882810 GGCGCCTGTGG
TGCTGGGGTGCATATAAGCAGGGCTCCCTG120119677 GGCGCCTGGGG
CTAGTGATCCCAAGATCCTGGGTGTGCTAG120801170 GGCGCCTGTGG
GGTAGTATGTGTCTATAATCCCAGCACTTG122955651 GGCGCCTGAGG
CTCTGCTACCATGTATACCAAAATTTCCCA136133709 GGCGCCTGTGG
CTGGGCCGCGCGCTTGCTCGCGCCTCCCCA145694000 GGCGCCTGGGG
CTGGGTGGGAAAGGGGATTGGAGGGGAGTG154015922 GGCGCCTGGGG
AAAGCACAGAGCCAGGGCCTTGCTGTAGGT156057562 GGCGCCTGTGG
CCCAAGCGGCTTCGCCCAGGCATCCGCGCG159545432 GGCGCCTGCGG
ACGAGGACCTGGGGCAGCCGTGGGCGCTGT19575301 GGCGCCTGGGG
CAGGGCAGGTGAGTTCCCTGCGCTCCGCAA21931080 GGCGCCTGCGG
GAGGGCGGCGTTGGAAGGCTTGGCGGCTCC24496706 GGCGCCTGCGG
GCCGCCAAAGAGTCTTGGAGCCAAAATGGC40327691 GGCGCCTGTGG
GTTCCACATGCATGCACAGGTGCACAGAGA44017847 GGCGCCTGGGG
TGGGGTACCTCATTCTGCCCTTCAGCTGTG44466893 GGCGCCTGGGG
TGTCCTGCACGAACTTGGTGAGCTTGATGA45338962 GGCGCCTGTGG
GCTCCGGGTCCCTGTCCACCCCATCTGCAG49845397 GGCGCCTGGGG
AAGTCCAGAAATGGGGGAAGGGAAGGATGG53217972 GGCGCCTGGGG
CATTTGAGGGACCCTCTGGAGCCAGGGTTG54947217 GGCGCCTGGGG
TCAGACTGTGCTTCTGGCCAGGCTGAGAAC55662303 GGCGCCTGAGG
GCTGGGACTATCTGTCCAACTGCAGGCTTT62559609 GGCGCCTGAGG
CCACCTGTCTCCCCAGAACCCTACACGTGC63039582 GGCGCCTGTGG
CTGAAAGAATTATAAGGATGGAAATGGAGA77096965 GGCGCCTGAGG
CCAGTGATCCCAAGATCCTGGGTGTGCTAA79875599 GGCGCCTGTGG
GAGTTTTTCTGTGGGGCTTCAGCGGTTGCA88013478 GGCGCCTGCGG
TGCATGTATGGGTGAGTGCATGTGAATACA88359794 GGCGCCTGTGG
CCCCCAATGAGGTTTCAACCTGTGTATGTT90336136 GGCGCCTGTGG
CATGTATGTTTCTACATCACTAGTATGCAT91372084 GGCGCCTGTGG
TGGTCTTTCAATAAGATCATCTGAATCCTA93882719 GGCGCCTGGGG
TGAGGCCAGGAGTTCTCTGGCCTGCGCAGT100925992 GGCGCCTGAGG
CCTTCACCGACATCGCCAAAGTGTCCATCG105065881 GGCGCCTGAGG
TGCTGATCCGGGTAGCAAAGCTCCGGCCTG107540878 GGCGCCTGTGG
GACCGATCTTCAACCCAGAGTTAGAGGCAG115798579 GGCGCCTGAGG
TAGGATGGCACCCTCATACCGCTTAGAACC116985508 GGCGCCTGGGG
TGGAAACACATAAATAGCTAAGCCTGGGTT118834435 GGCGCCTGGGG
TCATTATAAGGACAGCATTAACAGACACTC119911292 GGCGCCTGTGG
TCTGCTGCAGGCTCCACAGGCTCCCAGCCT125832313 GGCGCCTGGGG
GCGCGCCCGCCGGGCGGGGCGGGGGCGCCA126427292 GGCGCCTGCGG
GTGGCGTCGGGACCCTGGCCGTAGGGCAGC126629285 GGCGCCTGAGG
ATGTAGACCTGAAGTCAGTGTTCTCATCCT127087915 GGCGCCTGCGG
GCTAACAGCTCCTTCCCTCACATTGGAGGA128227263 GGCGCCTGAGG
CGGCCCGCATCACGTGCCTGGGGGGCAGAC128288848 GGCGCCTGTGG
AAACAAAACAACCCTGTAAGTCAGTGTGGT128636588 GGCGCCTGAGG
TGGGGGCTTACCCTGGGCTTCTCCCGCGCC129878472 GGCGCCTGGGG
TGGACAGCTCACCTAGTTCTCACACAAGCA133357929 GGCGCCTGGGG
AGGAGCAGCGAGCAATTCTCCGGAGTTCCT133979565 GGCGCCTGTGG
GTATGACCTTGTTAACAGGTAAGAAACAGG135653010 GGCGCCTGGGG
TGTTTTGCTTAGGGAGTAATAAAAGGCAAA136600144 GGCGCCTGTGG
AAGGTGTTTGATCATGTCTCCTGGACCCCT137144214 GGCGCCTGTGG
GTGAGGCATCTTGTGAGGGATGGAGAGAAA137987814 GGCGCCTGTGG
CTGGCCTGTGACACAGGCAGCGATATGCAC139160783 GGCGCCTGTGG
TTTGCACATACATGTGACACTGGCACTATT140776701 GGCGCCTGTGG
GTAGAGCAGGGTGATGAGTCAGAGGATGGA142367332 GGCGCCTGGGG
CTGAGGGCGGTGAGAGAGATGCTTTCCAAG142741089 GGCGCCTGTGG
TCTAGCCCTGGGAGCGTGGGGAGGAGGGGT142862290 GGCGCCTGGGG
ATTAAAAATAAAAGATCTTTCCACCATCTT147978085 GGCGCCTGCGG
TGTGAGTCTGAGGAGGGGCTGGCTGAGCCT148251083 GGCGCCTGAGG
TATGTATGCATTCATATGTGTTGTTGTGCA148873284 GGCGCCTGTGG
GGCCTAAGCCATCTGTAGCTTCTTACTTCC151509469 GGCGCCTGAGG
GCTCAGGTTCCGGGCTGTCTCCGAAGAATT152209600 GGCGCCTGAGG
CCCCTCCCTTTCTGCCTCCTCTGCCGCCAT152410343 GGCGCCTGTGG
GTGGAGGCCACTGGAGGCGGCCACAGCGGA155307938 GGCGCCTGGGG
GATCTATGTCTGTGCATCATGTGTGTACCT155806365 GGCGCCTGAGG
CTGAAAGAACTGCAGGGATGGAGATAGAGA6018424 GGCGCCTGAGG
CCGCATAAATGGCCTGGGTCACCACAAGGT21863794 GGCGCCTGTGG
TATCCCGGACGCTGTTGCCAGAGGCCCGGC21942222 GGCGCCTGTGG
CATGTGGCTGGAAAGACAGCAGAAAACAGA25006824 GGCGCCTGGGG
ACAAACAAACAAACCAAAACACCAGAAGTT25946227 GGCGCCTGAGG
CTGCTGCAAGCCCGTGGGGATGAGGGTTGT31075510 GGCGCCTGTGG
TTAAGAACCCACCATAGTTTCTGCCATCTT33233337 GGCGCCTGTGG
CTCCCCTCTCCCCCACCAGTGCTCAGCTCA35158301 GGCGCCTGTGG
AACCCTTGAGCGAACAGGGCTGTTCTAGCT36531066 GGCGCCTGGGG
TGCAGGTGCAGCGGCTGGAGCGCGACGTGC37320477 GGCGCCTGGGG
GCCAGGTGGAGGAGCTCGCCCATCAAAATC37320795 GGCGCCTGCGG
GCAATGCGGCGCGACTGCAGCGGAGAGGCG38842196 GGCGCCTGAGG
CATTCCTGAGTTCAAGGTGACTCAGGTGTG39530513 GGCGCCTGTGG
CCAGTGATCCTAAGATCCTGGGCATATTAG46961786 GGCGCCTGCGG
TCAGTGATCCTAAGATCCTGGGTGCGCTAG56619648 GGCGCCTGTGG
ATGAGGGTTAAGGTTCCCTAGGTCTAGAGT58477431 GGCGCCTGCGG
TTCTTGTTGGTCCAGGAATCTTTAGTGCAG64067952 GGCGCCTGTGG
GTGCATGCGTGTATATGCGGCAACACATGC64976188 GGCGCCTGAGG
GCCCTGGCTTCAGACACCTCAGTGGGTAAA65640790 GGCGCCTGGGG
ACCATACTGGTGATGTGTGCTTGTCTTAGG75137161 GGCGCCTGTGG
GACAAAGTGCCTGATCGGGTTCCCCAAGAC77099817 GGCGCCTGGGG
ATGAGGGTTAAGGTTCCCTAGGTCTAGAGT92693367 GGCGCCTGCGG
ATGAGGGTTGTGGTTCCCTAGGCTCAGGGT93753462 GGCGCCTGCGG
TCACATGTTCAACATTGCAATCTTACCTCA96825194 GGCGCCTGAGG
CCCTTAAAAGGAGGCGGGCCGTACCACCGC103901763 GGCGCCTGCGG
CCTGTCGCATCTCTCAGAAGCATTGCTGTC105744857 GGCGCCTGTGG
CCACTCCCTAATTAGCCTTGGTCTGATGCA106599090 GGCGCCTGAGG
TGGTCCAGGTTGGGGTGGGGTGGGAGGCGT107874786 GGCGCCTGGGG
CTGCTTGTGTGTCTATTTACCACATGCAGT108164757 GGCGCCTGAGG
GAAATAGGGGACTAGCCCTATGAACAAAAA110919037 GGCGCCTGAGG
GCGCCTTCCAGCCGCAGATGCAGGCTGTGC112417296 GGCGCCTGCGG
ACCCCCTGGGGCTGTCCCCAAGGTAGTGCA112633104 GGCGCCTGGGG
TGGGATAAAGGCTTCAGGGTCCACTGGAAC112653577 GGCGCCTGGGG
TATATTTGTCTGTGTACCACATGTATGCCT114028546 GGCGCCTGAGG
AATCATAGTCTCACTGAGAGCTCTGTTGCT114358618 GGCGCCTGCGG
GTGCGGTGTTCCCTGGCAACCTGAAGCCTG114377927 GGCGCCTGTGG
GGCGAGGAAACGGCTGGCGTCTGTGCAGTG114845926 GGCGCCTGGGG
CCCGGGGCTGTGCTGGCCGCTCTTCGCTGC115645046 GGCGCCTGAGG
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/GGCGCCTGNGGen |
db : mm39 |
k : 0 |
strand : GGCGCCTGNGG |
format : html |
download :
0.006 | 0.006 | search_start;
0.080 | 0.074 | search_plus_done; http://172.18.8.138:28851/match?q=GGCGCCTGNGG&k=0&no_gap=0&offset=0&limit=200
0.112 | 0.032 | search_minus_done; http://172.18.8.138:28851/match?q=CCNCAGGCGCC&k=0&no_gap=0&offset=0&limit=0
0.112 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.