— Rational design of CRISPR/Cas target.
2025-06-21 21:25:08, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)
Summary:
Results:
Matches are highlighted with blue background.
Mismatches and in dels are marked in red.
CTTACTGGGTTCCTTCCCTCAGAACTCAGG6231016 GAACCCCGTGG
AGATGCCCATGATCATAGAAGAAACCTACA15135751 GAACCCCGAGG
CCTCAACAGCTGTTGATGTGGTGACACAGA16365232 GAACCCCGAGG
ACTTAGAACAGACATTGGATTGAAGTCAGG18192183 GAACCCCGTGG
TTCCTCATGATTCATATTCTGGTTAATTTT23841687 GAACCCCGTGG
AGCAGTTAAAAGCAAGCCTGTTCCTCCAGA34523040 GAACCCCGAGG
GAGCTGGCAGGACTGAGCATGGCTCTGGAT43054502 GAACCCCGAGG
AGTGCCCACAAATGCCAGAAGAAGGCATTA46109062 GAACCCCGGGG
TGGTTGTGGCTTGAGTGCATAAAAACTCTT50851604 GAACCCCGGGG
GAACCTTAGAATGTGCAGAAAGAAACCTGA51170720 GAACCCCGCGG
TCCCGCGATCACGTGGAACTCAGATGTTCC51517906 GAACCCCGTGG
TGTTACCATAGCCTGCCTGCCTTTGAAAAG59623298 GAACCCCGAGG
AAGCGAGTCTGTGGGATCAGAGTAGCACAC63522601 GAACCCCGTGG
TTCAATTCTAGCAATTATAATTTCATCTGT68845217 GAACCCCGAGG
ACTACAGGCTCTTTAATCACCAAATCAGGT77482104 GAACCCCGAGG
ATCTTCTGATACATATGCAGCTAGAGACGT81779402 GAACCCCGGGG
GCGGGAATTCAGGGAACACCATCAAGGCAG83043711 GAACCCCGAGG
GTGAGATCCTGCAGGAAGCTCTATGTTCTG85645974 GAACCCCGGGG
CCTCTATCCCGAGGAGCTTGGCCAGAGAGT89820047 GAACCCCGGGG
ACTATTGTAACCTGACAACAAAGGGGGAGA90332799 GAACCCCGGGG
GCTGCGGAAAATAATTATGAATGCTGACGG91599078 GAACCCCGGGG
AAGGGGACCGTGTCCTGCACAGTGTCCTCG118723384 GAACCCCGAGG
GAAGACACATTAGTGTCTTCAGGTCCCCAA120170238 GAACCCCGAGG
TGGTCAAAGGACACACACACTAAACCATTT132516361 GAACCCCGGGG
CGATGAGGCTTGAAAGCTGCTGGCTGAGAG132686363 GAACCCCGGGG
CCTCCCTTCCAAAACAAAAGGAAAGAAAGA138058460 GAACCCCGTGG
AATTTGCAATGAATGGGAGTCGTGATGTGG138891243 GAACCCCGGGG
TGGATTGGAGAGGCATTCCTGATAGTGAAA146153952 GAACCCCGCGG
AATGACAGAAATCGTAAATGGGAAATTACA152474079 GAACCCCGAGG
AAATAAAAAAAAGAAAGAAATTCATCATCA155557192 GAACCCCGAGG
AAATCCTTCATCCCTTCTTTCCAGGTAACT157382429 GAACCCCGAGG
CTCCCTTCTTTGCTCTGCTGAACAATCACA158179466 GAACCCCGTGG
TCTACGCCCTCTTACTGAAACTATCTCGTA161594930 GAACCCCGAGG
GGGGATTATAAATTTGTCTTCCCTGGGAGT166209634 GAACCCCGGGG
TGTTTACTTGAATTTGTTGCCACTGTACTT182630580 GAACCCCGTGG
CTAGCAGTGAGAACTTAGGCATCAGATACA184952236 GAACCCCGTGG
ACCATCTCTACAAAAGTCTCTGCATACCTG186625506 GAACCCCGGGG
TTTCTGGTTAGGCTATGCTAGCTGGCCAGT188155651 GAACCCCGGGG
TGTTGAAAGAAGACAGAACTAGCCAGCACA10073364 GAACCCCGTGG
TTTGAAGAAGAGACAATAGCCTTAGAAATT10840045 GAACCCCGGGG
CTCTCTGTGCTCCCCCACAGAGCACCTCTA18975366 GAACCCCGGGG
ATAGACTAGTCTCCAGTTCAGCTGAGGTCT23634936 GAACCCCGAGG
TGGGCTCCCCTGGTGTCCTGTGCTGTTGCA27444822 GAACCCCGAGG
GCACGGCCAGTCCATGCGGTGTTGGAGATT29126464 GAACCCCGGGG
CTCTCTGATGGCCAGGCTGAGGCACAGGAG32102476 GAACCCCGTGG
AAATGCACTAGGGAAGAGCAGCATTTAGAG34429588 GAACCCCGTGG
TAGGGTCACCATGGGCACAGAGTTGTCTGA36911485 GAACCCCGAGG
TCAGAAATAATCCCCTTGACATCCTTTCTT38470024 GAACCCCGAGG
AGTTATATCTTGATGAGTTGTTGGTGAAAT40994138 GAACCCCGTGG
CATGGGAAAACCAGCAGCCTCAGCTGACTT41404336 GAACCCCGAGG
AGGAGGGGGCCACCGGAGCAGGCGAGGAGG66087080 GAACCCCGAGG
AGCGAGAAGCAAGGTTCATGGGGAGTCTTA71985969 GAACCCCGAGG
GAGGCTGGTCCCCGAGTCTTGTCCTGTTGA74522749 GAACCCCGAGG
ATGAGGTATGTCTAGTCTTCCTGTGACATT75618073 GAACCCCGAGG
AGATGAAGGTGTCTACACAGTCACAGTAAA90961245 GAACCCCGTGG
TCTTCCCATCTGTCAACAGACTCTTAGATC92852864 GAACCCCGGGG
TACCTGCCCTGGGTGAAGGTCACCAACACA93266223 GAACCCCGTGG
ATAGGTAGTTACTAGGAAGGATGTTTTGTG102735263 GAACCCCGGGG
CTGAGGTATAAAGATTTTGGCTCAGGCCAG103230997 GAACCCCGAGG
CTCAGCACCGAGGTTCTAGGCTTCGCCACT109111449 GAACCCCGAGG
ACAGGAAGACCAAGGGAGTCAAAGAACCTG114002719 GAACCCCGAGG
CACTGACTTCTCAAAGAATACAAATCAGAG115588898 GAACCCCGTGG
GAACGTCGTTACCACTTTAGGTGTTAAGAG117080839 GAACCCCGGGG
TACTTTTTTTTTTTTTTTAACTGCATTGAT117408008 GAACCCCGTGG
CAGTCCTTGAGTGGGTCCCCGTGGCCAGGA121408561 GAACCCCGTGG
GAAAAGCTATCAATGGTCTTACCTAGGCTT125654300 GAACCCCGAGG
CTTTCAGATGATGTGAGGGAAGTGAGATGG127268487 GAACCCCGAGG
CAGCCTGGTCTCCAGTTGAGCAAAGGTCTG136524594 GAACCCCGGGG
CAAACAATAAAAAGAAAGTAGAATTTTCAT141953863 GAACCCCGTGG
TTCTAATGTGTGAACACCTAGAGAGATTCT146229878 GAACCCCGGGG
CCTCCCCCTGCCTCAACCTCACTCCAGAAG152393086 GAACCCCGTGG
AGTATTCTTAACTGCTGAGCCATTTCTCCA155122468 GAACCCCGGGG
CCTGCTCACTGTGTTTGAAGCCCTGACTGA155494695 GAACCCCGTGG
TCCTCATCATTCTACCTGGAACCGGCTCCG157786236 GAACCCCGAGG
CACCAATTAGGCTAGGCCTGGCTGGCCGGT158043627 GAACCCCGAGG
TACACGGTGAGGATTCTCAGATGTGGCAAC159028197 GAACCCCGTGG
AGACAGCCTGGTCTTCAGTCAAGCATAGTT162959017 GAACCCCGGGG
AGACGCAGGCGAGTGCGGGAGGACAGACAG164628267 GAACCCCGGGG
TCCGAGCCCCACTGCCCCCCCCCCCTCAGT165496125 GAACCCCGTGG
CACCTCTGTGGTTCTGTGACAGCCAAGAGG167338505 GAACCCCGGGG
CTTTTTATTTATGGCTGCAGAGTGTTCTGT169019178 GAACCCCGTGG
CAGCCCAAGGTGATGGGCCCAGATCTGAGT172249874 GAACCCCGAGG
TCCTCAAAAAGTCCATAGCCCCCAGCTCCA172319101 GAACCCCGAGG
GGTTCTCTACTTGCGTCTCAGGAGCAGCTG172718647 GAACCCCGAGG
CTCTGTGTATTTGAGGGTCCCCAGAGACTA173392329 GAACCCCGAGG
CCCACAGTTAAATATTAGGCAAAGCTCAGG4559010 GAACCCCGAGG
CGCGGTCGGCACATGCTTTAACTCCTCCCG5283786 GAACCCCGAGG
TCAAGGATTTCCGTATATTAAACCTTCCCA7837018 GAACCCCGGGG
GGGTCACCTTGGGAGCAGAGTCGGTGGACA21254503 GAACCCCGAGG
GTGGGCACCAACGTCTGAGGACGTGCAAGA36696226 GAACCCCGAGG
GGAATAGAAAAGTTAAAACAATGAAGCCAA37425783 GAACCCCGAGG
GCTGTCTGAGGGGCCGTGGACTGGGGTGGT52056197 GAACCCCGTGG
GGCTGGAGCAGAACTCATGATGACATGTAA52934984 GAACCCCGTGG
TCGAACCCCTGACCCTGGAGCTCGGGAACA55089725 GAACCCCGCGG
GTCCCATTAGGTGAGCCTCCTCAGCATCTG56712474 GAACCCCGGGG
GATGTTTGAGCTCTGCCCCTGTGGTTCGAG69348281 GAACCCCGCGG
TGGCTTGTTTGGCAGCTTAGTCTCAATTCA70002511 GAACCCCGGGG
CCAACCAGGCTTCCAGAACAGAGAACCCTG79022295 GAACCCCGGGG
GGTGTGTGTTCTCCCACATACACGCTGATG84351252 GAACCCCGAGG
GGCAATAGCCCAAGGCCACTCCAGTGTTCG86870457 GAACCCCGAGG
GGCCTCATCCTGGACTTGATACTTCTTCCT86980889 GAACCCCGGGG
GGGCCGGGAGATGACTGACAGCTAATCTAG88420624 GAACCCCGAGG
CCTGCAGTGATAGAGGCCTTGGGGGTCCTG90184210 GAACCCCGCGG
GTCCTCTCTCATTTGACTCTGAGACGAGAA101541148 GAACCCCGAGG
ATCAGAACTGGGTAGAGTTGCTCTCAGAGT103298794 GAACCCCGGGG
GAAGACATAGATCTGAACCTGGCTGTAACT104181281 GAACCCCGAGG
GGACAGTCCCTGCCCTTTAAGGAAGGCAGT116763209 GAACCCCGGGG
GCCGCTCGCCCCACCCCCAGCTCGGGGGCG127689996 GAACCCCGGGG
GATGTAGAGAGTACGGTCAAGGGGGCTATA138073639 GAACCCCGAGG
TGTGATGCTCAGCAATACCAATTTGTCCTT141158604 GAACCCCGGGG
GTTGGCAGAAGTGAGGGAGGTCCTCAGGGT153836524 GAACCCCGTGG
TGTTTCTATGGGGACAAGGCCAGTCAAGAG8957243 GAACCCCGGGG
CTGATAAGAGTCCTCTCTGCCTACCTAGAA9631523 GAACCCCGAGG
TCCAACACATCCTTTCCCTCAGGGTTCAAA14728054 GAACCCCGAGG
TGGGAAAAGTCAGGGTAGCAACTACAGTGG22190092 GAACCCCGAGG
CCAGTGGTGCCTGAATGTCCAAGAGTCTGA32155046 GAACCCCGTGG
AGGGAAACATTTCCGAATCTTAGCAACCAT32701816 GAACCCCGGGG
AGAGTATACAGGAAGTGGGGTCTGGGAGTA35590634 GAACCCCGAGG
TTGTTTAGGAAAAGATAGATAATAGAGAAA38596289 GAACCCCGAGG
ATACGCTCAGCCTGCTGAGCCCCACCCTCG41098240 GAACCCCGCGG
TGTTACAGCACACCTCTGGAAGTCAGAGGG41549048 GAACCCCGTGG
CAGGTGACCAGGCACCCCACAAATCCAGGC46862241 GAACCCCGGGG
CGATCTGAAGTTAGCTGGGTCCACAGATAC49594168 GAACCCCGAGG
CCCAGCAGGCCTGGATGTCCAAGTGTCTGA52730318 GAACCCCGTGG
GTCTACGGACCAGGGATCTGCACCGAGCAA56657655 GAACCCCGTGG
TCATACATTATTCCATTTGTGGCAAACTTA57234430 GAACCCCGGGG
TTTAAATTTTATAGTTCACCTAAGGTTCTA58287254 GAACCCCGAGG
GTGCACAGACAGCCTGAGCCTCCAGGTCTT74708068 GAACCCCGGGG
GCAGGCTGGTCTCCAGTTGAGCTGAGGTCT76345385 GAACCCCGAGG
CAGTCTGGTTTCCAGTCGAACATAGGTCTT80670593 GAACCCCGGGG
CAGCCTGGTCTCTGGTAGAGCAAAGATCTA92246342 GAACCCCGGGG
CCTCTCTGCCACTCTCTGCTCTCTCTGTGG99231207 GAACCCCGGGG
ATGGTAAGTGGAGAATGTGTTACCAAAGCA100873182 GAACCCCGAGG
ATGCATCTTCAACAGAGGCTGTATTCAAAT106996198 GAACCCCGAGG
TCTGAAATCTTCCCCATGCGGAGCCAGACT107410029 GAACCCCGTGG
CTAGGCAGGGAGTGTGCTCGGATGGTGACG107709555 GAACCCCGAGG
CCTTGTTGTCAAGAGGCTGGGGATCCCTAA109840108 GAACCCCGAGG
TTGCGGGGGTCTGGAGACTCCACGGACAAG113896733 GAACCCCGGGG
GATTTCCCGTACCACTTTCGTACCGGCCGG119089840 GAACCCCGGGG
GTAGTCTACCATGAAGGGAAGTCAAGGCAG119997485 GAACCCCGAGG
TTCTCTGGGACATCCATTGAACGGCAGAAA123093238 GAACCCCGTGG
AACTGATCCCCCTTCGGAGTAACAACTAAA123185899 GAACCCCGTGG
CTCCCCTTGCCTCTGTCTATGAGTCTGTGG128138258 GAACCCCGGGG
GAACCAGGCCTTGTTCTGTGTCTTCTCAAA132465696 GAACCCCGGGG
TTAAAGATTGCTGCAGGCAGGAGGGTCTCG132749711 GAACCCCGTGG
AGTCCCTACAGGAGAAGCTCATTCTTCAGG134875249 GAACCCCGGGG
GCAACGGGGAAACAGCTGGCGCGGCTGCCC135748646 GAACCCCGGGG
ACAGAAGGCTAGATCTGCTGGCTCTGGGTG137258892 GAACCCCGTGG
AATGTCTGCTGTGCAGTATATCTGATGGGT139834426 GAACCCCGTGG
TCCCCACCCCCATTTTACTCAGCTACATCT144845951 GAACCCCGAGG
GTGTGAACTGCTGTGTGGTTGCTGGGAATT148818378 GAACCCCGGGG
CAGCCTGGTCTCCAGTCGAGCAAAGATTTA150053894 GAACCCCGGGG
CGTGGATGCAGGCTACCACAGGCTGCCACA152100064 GAACCCCGAGG
GAGGGGATCAAGAGAACTGAGGATCCAGCT154640659 GAACCCCGGGG
GCGCTCAGACAGGTTCCAGGTCAATAAGGG155831746 GAACCCCGCGG
CTAGGGTTCCTAGATTCAGAACTATTACCT155909188 GAACCCCGTGG
CGCCACCAATGCAGCCACACCACTCGCCTG156518584 GAACCCCGGGG
GCAGTATTCATCATAAGGTCTGCTAGTGCA156537730 GAACCCCGAGG
CTACTAAAAAAGAACATGTTCCCACCAAGA14373529 GAACCCCGTGG
TGTACACATATATACACATGATAAAGAATT20177254 GAACCCCGAGG
GCGATGGCTGCCCGGGACGGGTGGGGGACG20906903 GAACCCCGGGG
GTATCTAAAAATGAGATTCCCATGACAACT22683967 GAACCCCGTGG
CGGGACTGGCCGTCGGGGTCCCGGGACGGC30310267 GAACCCCGGGG
TGCTCTGGCGACGGCCAGAAGAGAGCGTCG30824781 GAACCCCGGGG
TATCTTAAGAGTGGCTCCCCACCAGTGACA33646256 GAACCCCGGGG
TTCATAGCTGTTGAACCTTCTATAGGTGTT38970851 GAACCCCGAGG
GCGGGTGTTGGGCAAGACTCTGCTGGCAAG50271221 GAACCCCGGGG
AAAATGCTAATGGTTCTGTGGACGAGTGAA53270157 GAACCCCGGGG
CGGAGAAAGTTGGAGAGAAAGCTGAAGACT64532382 GAACCCCGGGG
GCAATAACAAAGAGTGATATGCAACATGTT66642990 GAACCCCGTGG
AGCTACAAGCAATAGTTTCCTTAACTACAA72563553 GAACCCCGGGG
CAACTTGGCAAACTGCAACCCCAACCCAGA75815112 GAACCCCGTGG
CCAGCCCTGGGCTCAGAAGAAGGCCCTTCA93100233 GAACCCCGTGG
ATCCCAACTCAATCTTCAGTTCTCTTTACT98499251 GAACCCCGGGG
TGTGTCACCTCCTCTGCCACATAGCTCCCT103676329 GAACCCCGAGG
ATCTGGTCATCACAAGCTCTTTCTAGATGA112284219 GAACCCCGAGG
CAGAAGGAAAGGGGAAGGAGAATGCTGGAA112310737 GAACCCCGTGG
TGGGGTTCGGGTTCCTTTGCTGGGCACGAG113594624 GAACCCCGAGG
ACTGTGGCACACAGGCCAGTCATTTCTACT115434066 GAACCCCGGGG
GGGGAGCTCGCTCACCCCCCGGACACACAG115567516 GAACCCCGAGG
TGTTATGTAAAAATGATAAGAACTTATTGT116108033 GAACCCCGAGG
AAAGGTTCTTACTGCCAACCTGTGGCCAGT117183965 GAACCCCGGGG
CGATCAGGAAGGACATCAGAAATAAAACGG117494115 GAACCCCGGGG
GTGCCAGGCTCCTTTGCTTTTTTCCCAAAA118432280 GAACCCCGGGG
CATAGTTGCACCTAGGGGTTACTTAGAGAA122793555 GAACCCCGGGG
TCGACAGTTAGCATAGGCCAGCTGTTCAGT124043419 GAACCCCGCGG
CAGTAGCAGACACTAAACCCACACTGATTT124296644 GAACCCCGAGG
TTGCCTTACAACCTTAAGTTCAAAGTCTAG134939549 GAACCCCGCGG
CAACCTGTGTGAGTGTCCTGCCTAAAACAG135018577 GAACCCCGGGG
CGAGCACTTCTGAGAACCATGGAAAATCAG136487571 GAACCCCGAGG
CGTGTTTTGGACTCAGTTGAATTCCTATGT137872960 GAACCCCGTGG
ACCAAGACAGACACCTCAGGATAGAGAGGA139347180 GAACCCCGGGG
AGGGGGAGGAGGTCTGTCTGGAGCCAGCAA139894423 GAACCCCGAGG
GAAGGTACACCTTGTTCCTTCATACCCATG139961207 GAACCCCGAGG
GGCTGTTCTGTGACCCTTGGGGAGCAATCT140730995 GAACCCCGTGG
AAGAATCAAACAGGTTCTCTGCTGGGAAAT140913709 GAACCCCGAGG
ATCGGCCCTGGGGAGAGCCCGGTGTGCTCT146890176 GAACCCCGGGG
AAACATCTGTGTTTTCTGATGGTCTTTGGT148022368 GAACCCCGTGG
TGGCATGGAGGTTTGATTGAGCATCTGAGC148762158 GAACCCCGAGG
TGCATTACAGCATTCTCCTGAGAGATCTAG5677213 GAACCCCGTGG
Data Export:
Maximum 100000 results can be retrieved in various formats shown below:
Debug Info:
Redirect URI : http://crispr.dbcls.jp /detail/en/mm39/GAACCCCGNGGen |
db : mm39 |
k : 0 |
strand : GAACCCCGNGG |
format : html |
download :
0.006 | 0.006 | search_start;
0.080 | 0.074 | search_plus_done; http://172.18.8.138:28851/match?q=GAACCCCGNGG&k=0&no_gap=0&offset=0&limit=200
0.112 | 0.033 | search_minus_done; http://172.18.8.138:28851/match?q=CCNCGGGGTTC&k=0&no_gap=0&offset=0&limit=0
0.112 | 0.000 | cgi_end;
CRISPRdirect |
DBCLS
Creative Commons Attribution 4.0 International License (CC BY 4.0) .
If you use CRISPRdirect in your work, please cite:Bioinformatics , 31 , 1120-1123.
[Full Text]
— Rational design of CRISPR/Cas target.