CRISPRdirect — Rational design of CRISPR/Cas target. 

0 mismatch/gap   |   ≤1 mismatch/gap   |   ≤2 mismatches/gaps   |   more:

Search for: both strand plus strand minus strand

2025-06-21 22:27:03, GGGenome : Mouse genome, GRCm39/mm39 (Jun, 2020)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:4882675-4882685
AGAGCCATTAAAGGCGTGTGCCACCACCAT4882675CCGGCACCACCGCCTGGTTTAAAATCTTTAACCCAAGTCAT
chr1:5006297-5006307
CAAACAGATCTCAATTACTCATGCTGAAGT5006297CCTGCACCACCATGCAAAAGCTGGGTTATTCTTGTAACCTT
chr1:5088254-5088264
CCTTTCCAGCACTCTCAGGACAGAAACCCT5088254CCTGCACCACCACTTTCTTCACGCTGTGGCTCTGTTCTCCA
chr1:6541688-6541698
TGCCTATGTATGCGTGGTGGCCAGCAGTAG6541688CCAGCACCACCCTGCAAAGGCACATGTGGTTTCCCACAATT
chr1:7187771-7187781
ACTTGCTACTACTGGACCCATGTTTTGTTT7187771CCAGCACCACCATAACTGCTTGTACCTTCAGCAGCAGGGGA
chr1:7260100-7260110
TGGATTATCTGGATCATCAAAGCACTTTTC7260100CCAGCACCACCTGCTCCAACCACCACCAGTCTGTCCTCAGT
chr1:9427338-9427348
ATCCACGTGGACCAGCCCAGACGAGACAAG9427338CCTGCACCACCGCAGTTCAGCTCCAGCGGATCCTAGCCAAG
chr1:12439113-12439123
TTCAGCTTTCTGAGAGTCTGGGACTAAAAG12439113CCTGCACCACCTGACCACATTGCAATGATGTTTATCCTTCT
chr1:13646519-13646529
CCTCTGTCTCCCGAGTGCTGGGATTAAAGG13646519CCTGCACCACCACTGCCCAGCGACAAGACAATTCTTTAAAG
chr1:15681380-15681390
ACAAGTGCTACCACTGAAACGGATGAAAAG15681380CCAGCACCACCCTAGAGGCCATGGACTTTGCTTTCACCTGA
chr1:15776238-15776248
GCTCTGTGTGACCCCTTCATGCCTTCAAAA15776238CCAGCACCACCTGGGTAACTCTTACACATTACCAAGTCCAG
chr1:16261489-16261499
GGGAGCATTCATTGCACAGCTCCAGGGAAG16261489CCAGCACCACCTCCTTATGTACTCTTGAGTCTTGGCAACTG
chr1:16485455-16485465
GTCAGCGCCAGCCACCCACCATTTTGGGCT16485455CCCGCACCACCTTGGGCGCGAAATCATCAGATGGTCCCAAG
chr1:16879434-16879444
AATTCTGAGCACATACCACCACCACCACCA16879434CCAGCACCACCACCACCACCACCACCACCACTACCACCATC
chr1:20483486-20483496
CCACCACCAGCACCAGCACCAGCACCAGCA20483486CCAGCACCACCACCACCACCACCACCACCACCACCACCACC
chr1:20951140-20951150
GCTCATAAGCACAGGGTGTTCACAAAGCAC20951140CCTGCACCACCACCACCAAAATTACTGTAATTAGCTCATTG
chr1:21146213-21146223
GTCCAAACTGTGGAGAAAAAAAACAGAGCC21146213CCTGCACCACCTCCCCCCCCCCCCCAAGCAGGGTTAAGAAG
chr1:22587039-22587049
ACTTAAATGAAGGGAAGCACACTCACACCA22587039CCAGCACCACCACCATAACCACCCCCCCCAAACAACAACAA
chr1:23726484-23726494
GAGTGTAAAATTTTTTACCATATTCCATTC23726484CCTGCACCACCACCCCATCCACCCTCCAACTGTTCCACATC
chr1:26759800-26759810
CCTCTGTCTCCCAAGTGCTGGTATTAAAGG26759800CCGGCACCACCACTGCCGTGCTTAACTTCACCTTTCTTACA
chr1:27836547-27836557
TGCCTATGTATGTGTGGTGGCCTGCGGTAG27836547CCAGCACCACCCTGCAATGGCACACGTGGCTTCCCACACAC
chr1:31260107-31260117
GTTCTCCATGGCTCCTTCATTCCTTTTAAA31260107CCAGCACCACCTGGGAAACTCTTACACATTACAAAGTTTGG
chr1:34026877-34026887
CAGATACACACACTACCACCACTATTAACA34026877CCAGCACCACCACCAGCACCACCACCACCAACAACCAAATT
chr1:34026889-34026899
CTACCACCACTATTAACACCAGCACCACCA34026889CCAGCACCACCACCACCAACAACCAAATTAACAGGAATCAA
chr1:34544459-34544469
TGAGTTGGTCAGCCTGGCAGCTTTCCCGAG34544459CCAGCACCACCAGGACCAGCCCTCCTGCTTTTTGCCCAGGC
chr1:34676661-34676671
AGCTAACCCAACTCCTCCGAGCTCCCAGGG34676661CCTGCACCACCAACCAGAGCATACATGGAGGGATCCCTTGC
chr1:35424225-35424235
CCCCGCCCCAGCTTCACACACTCACCTGCT35424225CCAGCACCACCGGGGTATCTCTGAATCCTCCACTGTACTTT
chr1:35769319-35769329
CCTGTCTCACACTCTGCCCTTGCTTCCAGC35769319CCAGCACCACCAGTCAACTCCCTACATAGAATGCCACACTA
chr1:36020545-36020555
TGGTCTACTGAGTTCCTGGCCTGGCCCATC36020545CCAGCACCACCTCCATACGCAGGTCTGCCTCCAGTCTCACA
chr1:36366271-36366281
ATCTACCATTTCTCCACCCACATCTGCATC36366271CCTGCACCACCCCACCCCACCCCGCCCTGACTTGGTTCTTA
chr1:36402739-36402749
ACTGGGATTAAAGGCGTGCGCCACCACCGC36402739CCAGCACCACCGACCTCTTAAGTTAAGATAGTATTATGCTA
chr1:36409977-36409987
CCTCTTCTTTTCAAGTGTCCGGATTATAGG36409977CCTGCACCACCATAGAACACTGTTTTAAACACTCAGTTGCC
chr1:36472030-36472040
ACATGCCTTCAGTGCTCTCAGGCCTGCGAG36472030CCAGCACCACCATCTTCCTTGCTAACTCACTTCGTTTACTT
chr1:36960866-36960876
CACCTGCGCACTTCCAAACCAGCCCCAGCC36960866CCAGCACCACCGCCACCGCCACCCTCCAGCTCACTGACCCG
chr1:38676714-38676724
GCTGCATGTGTGAGGTTCTGAGGTCAATCT38676714CCAGCACCACCAAACACAAACATAATAAATAAAAATTAAAA
chr1:38695918-38695928
CAGGTCTCCTGTGCACATCAACCACCACCA38695918CCAGCACCACCACCACCACCACCAACAACAACAACAACAAA
chr1:38726420-38726430
TGGCTTTCTGAGTTTTCTTTCTTATAGAAC38726420CCAGCACCACCCAAACAGGGGTAGCAGCATCCACAGTGGGC
chr1:38794474-38794484
CAAAGAAGAAAGAAAGAAAATCAAACCAAA38794474CCAGCACCACCAGCAACAAAAATCAGCACATCTCTAAACTC
chr1:39244883-39244893
TGTATGAGGTTTCCCCGGCTGTAGCCAACT39244883CCTGCACCACCCAGAAGCCCTGGGAGGGACAAGCTGTAGCC
chr1:42553706-42553716
ATGCTCTACCAGAGGTCCTGGGTTCAATTC42553706CCAGCACCACCCATAGACAGCTCACGGCTGTCTGTAACTGT
chr1:42770647-42770657
ATGGGCCTACCTCTCCAGGTTCCACCTCTT42770647CCAGCACCACCACAGGTTGACAAGAAAGCCTTAAGCACATG
chr1:43619022-43619032
TCTTCTTCCCAAGTTCCAGGAGATAACATG43619022CCTGCACCACCATGTGATCCTCCTAAAATATAATAGTCACT
chr1:44585817-44585827
GCCTCTGCCTCCTTCAGCAAATCCTACCGG44585817CCTGCACCACCAGAGCTGGCAAGAAGTGGGAGTGGGTGGGT
chr1:45675028-45675038
GGTTGACCACATCGAAAGCATCCAGTGCTT45675028CCGGCACCACCCTTTCCTCTTGAAACCTGGGCTACAGCAGC
chr1:47255764-47255774
TTGTGAATTGCAGTTGATACCTCCCCACCC47255764CCTGCACCACCCTCCTCTCCCAGCTTTGTTGAAATGTGGTT
chr1:48511817-48511827
CTAGGTTTCCATATCACTCCCAAAATAGCC48511817CCCGCACCACCAATTTCAGCCAAGTCTCCCTGTTCCTTCCC
chr1:49333376-49333386
TGCCTATGTATGCATGGTGGCCAGCAGAAG49333376CCAGCACCACCCTGCAACGGCACATGTGGCTTCCCACATGA
chr1:49749108-49749118
CGCACAAGGAAATAGAAGAAGTTATTAATC49749108CCTGCACCACCTCCCCCTCCAAAAAAAAAAAAAAAAAAGCC
chr1:51247827-51247837
TGCCTATGTATGCATGGTGGCCAGCAGTAG51247827CCAGCACCACCCTGCAACGGCACATGTGGCTTCCCACATTT
chr1:51698577-51698587
ATTTTCAGAAAGAAACGCCTGAAGCTACAT51698577CCAGCACCACCACCATTCTCTACCATCTTAGGTTTTCAGTT
chr1:52154551-52154561
GTTCTGCCGCCCACCCTCCACTCCCTACCC52154551CCAGCACCACCGCTGTAAGATCTGTCTCAGTGATCTGGTTT
chr1:53741764-53741774
CTTATAAGCTTCTGGACCACTTGCCCAGGT53741764CCAGCACCACCCACAGAGGGCTGGGCCCTTCCAGACCAGTC
chr1:53934158-53934168
TTTAAAGTGAAATGGGTCCGGGTTTCATTT53934158CCAGCACCACCATGAGTAAGCAAATACAGAGCAAGCATGGA
chr1:54281553-54281563
GCTGATGTATGTGAGGCAACATTTATCACC54281553CCTGCACCACCCTTTTTAATACATTTATTGATTGATTTTCC
chr1:54443648-54443658
CCTCCCAAGTTCTGGGATTAAAGGCATGCA54443648CCAGCACCACCCAGCAAGATAGACATTTTTATAGAGAATAA
chr1:54680252-54680262
TCCAAACTCAGGTTTCTCAAGCTTGGGTAG54680252CCTGCACCACCTGAGCCATCTTGTCACTTCCCTTGAGTCCT
chr1:58069243-58069253
AGAAGGTGAGAGCCCGCGGGTAGGCAGACT58069243CCTGCACCACCCCGGACCCCAGTTCTGGGCCCTATCCCAGC
chr1:58503710-58503720
ACTCTGTCTCCGAAGTGCTGAGATTAAAGG58503710CCTGCACCACCATCGCCCCACAGATTTTATTTTATTTTGGA
chr1:60667741-60667751
CCTCTGCCTTCCAAGTGCTGGCATTACAGG60667741CCTGCACCACCAGGGCCAGCAGCAAAGCAGGTGTTTAAGGT
chr1:60754378-60754388
AAGAGCTCAGTGTGGGGACCTGTGACTCTG60754378CCAGCACCACCTGGAATTCATCTTTCCCAGTGAGACCCAGA
chr1:61659894-61659904
TCAAATTGGATACCCAGCCCTCACTCTCAG61659894CCAGCACCACCCATTGTTCCTATAGTAGACTTTGATATCCT
chr1:62900134-62900144
GATAGCCAGGCTGCCATGCCAGGGAGGGAG62900134CCAGCACCACCCCCACAACTTCTGCTGCCCAGTGCCTGGGG
chr1:63131098-63131108
GTGAGGCTCTTGCATCCTTTCAGGATGACT63131098CCAGCACCACCACCTTGGCCAGATTTTCATCATTATTCTGT
chr1:63262618-63262628
GTGCTGCTTCTGTGGGCCCATGGCCAGTTC63262618CCAGCACCACCCACAGTAAGGAGCTGCAGGGGGACCTGACA
chr1:65019479-65019489
GCTAGTGCCCCTAACCACTGAGCCATCTCT65019479CCAGCACCACCTGCCATGCATTGCATTTTTAACTTATCCTG
chr1:66955484-66955494
TGGCTTCCTCAGCCTGACTCCTTATAGAAC66955484CCAGCACCACCAGCTCAGGGATGGCCCCGCCCACAATGGCC
chr1:67807550-67807560
TAACCCTTCTCTTTCATGGTCCTCTGATGG67807550CCAGCACCACCACCTAATTTGTCAGTTGAACCCTTATTGGC
chr1:70765567-70765577
GACCTTTAAGTTCAGATTGGTCTGTGACCC70765567CCAGCACCACCGTTAACCTCAGAGTGACTAGGTAAGTGAAT
chr1:71133310-71133320
CCTAGGATGGATCCCAACCTAAGAGAGGCA71133310CCTGCACCACCAAAAGAAGAAATATCTGGAATAAAACTTCC
chr1:72391840-72391850
CCTGGCACACACAAGATTCTGAGTGTGATC72391840CCGGCACCACCTCCAAGGTGAAGTGACTCATTAGCTCCAAT
chr1:73982498-73982508
TCCCTTGCCACAGCCACACAGTTGCAATGG73982498CCCGCACCACCCAGGTAGCCTTCCTGCTTGATGTAAACAGC
chr1:74526326-74526336
CACTGTGTGGATTATTCCTCTGTGTGACAC74526326CCAGCACCACCACTGAGCTTCCTGCTCAGCACCTAGGAATA
chr1:74657656-74657666
CTGTTTGGACAGAGAACCTAGATTCAATTC74657656CCAGCACCACCCACAAAGCAGCTTACAACTGTCAATAATTT
chr1:75557225-75557235
CCCCTGCCTCCTGAGTACTGGGATTAAAGG75557225CCTGCACCACCATGCCTGGGGTTATATTTATTTTTATGGTG
chr1:75657400-75657410
TCCCACTCAAGAGGAGACTTGAAGTGCTTT75657400CCGGCACCACCTAAACACCTAAACAGCCTCCGTGCCTGACT
chr1:75735055-75735065
CCTCTGCCTCCCAAATGCTGGAACTAAAGG75735055CCTGCACCACCATGCCCAGCAGTTATCTTCTTCTTGATGTT
chr1:77244207-77244217
TTCAGGCTGGCTAATTATTAATCAACCTAG77244207CCAGCACCACCCTCAGAGACTTTGGATGGAACAGGTCCTCA
chr1:77289782-77289792
AACCACTGTTTCTCTTATCATGCATAACAC77289782CCAGCACCACCCACCCCTGTTTCTCACCTGGATTAATATAA
chr1:77837866-77837876
AGTTGGGTCAGTCATTGGTTGGCTACAAAT77837866CCTGCACCACCATTTCCTCTGCACATCTTGCAGGCAGGACA
chr1:78826841-78826851
AACAAAAACAAGCAAACAAACAACCCTAAA78826841CCAGCACCACCAAAACAACAAAAATGAGGAAAGGAACCACT
chr1:80017549-80017559
CCCTTCTCAAAGAAAATGCATCAAGATGAA80017549CCTGCACCACCCAGCCACGTTTCAACTCTCAATGGCTTTGG
chr1:81726317-81726327
CACATACTGTGGTTTCTGCACCAATCCCTA81726317CCAGCACCACCTGCAAGGTCAGAATTGATGCCTGCTTGACC
chr1:84887213-84887223
TAGCATGGAAAGAGACCCTCAGTTCAAAAC84887213CCAGCACCACCCAAAACGACAGCAAAGCTGAACATCTATAA
chr1:86981648-86981658
GCATCAGTGCGCTCAGGATTGAGGAGCAGG86981648CCAGCACCACCAGGGGTGAGAGGCATCCGATCTAGAAGATC
chr1:87095813-87095823
ACCTCAGATGAGAATGTTCTAGTTGATATC87095813CCAGCACCACCATTTATTAGCTGTGAACAGGCTACTTGGTC
chr1:87130261-87130271
CTAGCCTGGGCAAAGCCCTGCCTTTGGTCT87130261CCAGCACCACCATGTAAAATCCAGCCTGGTGATTACAGCAG
chr1:87895472-87895482
AGTTATCCTGGGCAAGGCCCTGAATTCCAC87895472CCAGCACCACCACACCATTATTAGATTTTTATACACACACT
chr1:87950040-87950050
TCCACAGCCGCCTACCCGCAGCTTGAGTGC87950040CCTGCACCACCTTTCATGGAAGTCTGAGCCGGCTGTACAGC
chr1:88787979-88787989
GTCTCCAGGTGTGACAGTATCCTCTCGAGA88787979CCTGCACCACCTGTGTGTGAAGCCCTCGGTGGCATGTAGAC
chr1:89549728-89549738
AATAAGGCGACCACATTTGCAGGGACTTGT89549728CCTGCACCACCATGAAGCTAAGGGGAAAAGGCTGATCTCAC
chr1:90211843-90211853
AAAGGGACAGGGAGTGCCTGGGAACGTCTG90211843CCAGCACCACCACCTAGTGCAGCAGGGTTTGACAAAGACAC
chr1:90824545-90824555
AGCAAGAGCACACCCTCCCCTTCCCCCGCC90824545CCAGCACCACCTAAGGCAGCCAAGGAGCAGAAGCCTGTGTG
chr1:91237984-91237994
CCTGCGTGGTGTTTTACCCCCAAATCAGTG91237984CCAGCACCACCTTTGTTAGGATGTCTGAGGAGGTGGAGACA
chr1:91283923-91283933
GCCGGTTGTCTCCAGGGCCGAGGCAGGTCG91283923CCAGCACCACCGCATCAGCTCTGGCGGGCTGGAGGAAGACC
chr1:91474878-91474888
TTTGGAAGCTGGTGCTGATCCCAACGGCAG91474878CCGGCACCACCGCAGCACTCCTGTGTACCATGCCTCTCGTG
chr1:92376021-92376031
ACCTTTCCAGAGTACCCAAGGTGCACAGCT92376021CCTGCACCACCATCTCATACAGCCAGTTTGCTCCTTCTCTT
chr1:92640589-92640599
TCACAGCCATCCTGTGGACAGACAAGCCTT92640589CCAGCACCACCTACATGAAAGCCAGTGGGAACACACCTGCT
chr1:92786560-92786570
ACCTCTGGCTGCACACTCCTCCCCTACCCT92786560CCTGCACCACCCCCAGAAGCTCATGAGGCCAACCAGAAGGG
chr1:92807270-92807280
AGCCAACCACTCAACTGTCTGCTCCTTGCG92807270CCAGCACCACCTAAGCAGAGACTCCAGACAGGGACATGGGG
chr1:92923950-92923960
GATATAGAGGCCATGGAAGGTGGAACTCTG92923950CCAGCACCACCTCCAGAACATGATGCACCAAAAACCATTCT
chr1:93055855-93055865
CAGGAAGCACCTGGACCCCACACATGTCTA93055855CCAGCACCACCACCAGGGCTTTGAAGCCACCAGAACCACCT
chr1:93595672-93595682
CAACCCCGGCTCTCTACCTGGCTCCTCCTA93595672CCAGCACCACCCTCTACCTGGCTCCTCCTACCAGCTCACCC
chr1:93710153-93710163
GCTCTGCGTGACCCCTTCATGCCTTCATAA93710153CCAGCACCACCTGGGTAATTCTTACACATTACCAGGTCCAG
chr1:97849264-97849274
TTATAGTGATCCAGTTCTGGGGCCTGAGAA97849264CCTGCACCACCACAAGGGGCTCTTTCAAGAAAAAATCTAGA
chr1:104920277-104920287
CCTCTTCCTCTTCCTCTGTCACCACCACCA104920277CCAGCACCACCTCCTTCTCCACCACAACTGCCCTTGAATAC
chr1:105116813-105116823
TGAGCACAGCAGAGGGTGTGTTTCTGCAGC105116813CCAGCACCACCCACCCTCAGAAATCTGTTGGTTTTTTCCAT
chr1:105558335-105558345
TCCCATTCGTTCTCTTAGCTGGATCACAGA105558335CCTGCACCACCATGCCTAGAAAAACTGAGCACTTTGGAAAT
chr1:106862679-106862689
CATCTGCCTTCTAAGTGTTAGGACTAAAAA106862679CCTGCACCACCAATGCCCAGCTCATATAAGATCTTAAATTG
chr1:108618910-108618920
AAGGTACTAACTCCCTATTTCCCTATCCTC108618910CCTGCACCACCCCCACTTCAAATTACCTCAATGCCCATATT
chr1:108925165-108925175
AAGGAAGAGAAACTAGATCATCCATCTCCT108925165CCTGCACCACCCCTCTAAACAGAACTTCAAGGGGGAGCTGT
chr1:109813407-109813417
CTAAGATTTCAAAACAAGATTAACAATTTC109813407CCTGCACCACCTCACACTAAAAACCTCAGGGACAGACAAAA
chr1:113901070-113901080
TGATTCACCAGAACTGCTCTTCACTATGTG113901070CCAGCACCACCTATCATGGCTATTCATATCTTCTGAGTCCA
chr1:115296350-115296360
CCTCCCAAGTTCTGGGATTAAAGGTGTATA115296350CCAGCACCACCCGGCTCAGCTTGTTAACTTTTGAAGTTTTG
chr1:116230866-116230876
ATTCTCCATCCCACATGCTGGCATTTCAGA116230866CCTGCACCACCTGGGCACTGGTAAATGAGTCCAGGATTTGC
chr1:117352724-117352734
ACACACACACACACACTACCACTACCACCA117352724CCAGCACCACCAAAAATGAAAAACACCGTTTTCTTGAGTAG
chr1:117583447-117583457
TGCCTATGTATGCGTGGTGGCCAGCGGAAG117583447CCAGCACCACCCTGCAACGGAACATGTGGCTTCCCACATCT
chr1:118299415-118299425
CCTCTGCCTCCCCAGTGCTGGGATTAAAGG118299415CCTGCACCACCACTGCCTGGCTGAGATCTTTTCATTTAGCT
chr1:118591528-118591538
GCTCACATCCTAGTACTGGGAGAGGCATGT118591528CCTGCACCACCAGTTTTTTTTTTTTTTTTTTTATATGGGTG
chr1:118813478-118813488
GCAACACAGTAAGACTCAGTCTTAATTCCC118813478CCAGCACCACCCCTAAAAAAGAGCTGAGGGGCCAGGGAGTG
chr1:118926832-118926842
GCACACACTTCTTCAGTCCACATATGGGCT118926832CCAGCACCACCCACACCTGCAGCATTTTCCATCCGCCAGGC
chr1:119379539-119379549
CTATCTGAACGCTTCCTTCCAGCCCTGCTG119379539CCTGCACCACCGCCAAACTTTGATGAATATTCATGGAGAAC
chr1:120284535-120284545
CTTGTTATATAGCCAAGTGCTCCAGACAGG120284535CCAGCACCACCACACACAGTATCAGTCTTGATAGGAGGGAG
chr1:121075273-121075283
GTGTAAGCATGAGGGCCTAAATTTGGATGT121075273CCAGCACCACCATGAAAAACAGGAATAGTGTTGCATGTGCC
chr1:123347528-123347538
AGACTTCATGACCACTTCATGCCTTCAAAA123347528CCAGCACCACCTGGGTCAGTCACTCTTACACATTACCAAGT
chr1:123950105-123950115
TCCAAGGCTCACTCGCTCACCTTCCCTCTA123950105CCAGCACCACCCTTCTCGCCACCTTGGGTCTGTGGTTCACT
chr1:124256399-124256409
TACTGAATATTTGTTCACATGTAACAGAGC124256399CCAGCACCACCACCGTGTAATCTCGGCAAGGAACCAACATC
chr1:124803626-124803636
TGACTTGCTCAGTTTGCTTTCTTATAACAT124803626CCAGCACCACCAGCCCAGGGTTGACACAACCCACAATGAAC
chr1:125362922-125362932
CCTGGAAAAGATCTCTGTCCCGGGAGGCTC125362922CCGGCACCACCCCTCGCCAGTCTGGCCGGCTCCCCCCATTC
chr1:125436680-125436690
GCTCTCAGCCCTCCCCTAGTCCCCTGTCCC125436680CCTGCACCACCCACTTCCCTGCCCCTCACCCCGCCCCCAGG
chr1:125549478-125549488
AAACACTGCTTTTATCTTTCTCTGGCTCAC125549478CCTGCACCACCTGATTCTGAAATGTTTCATAAAAACATAAC
chr1:129222187-129222197
ACTCTTCATGACACCTTCATGCCTTCAAAA129222187CCAGCACCACCCGGGTGACTTTTGCATATTATCAAGTACAG
chr1:130720595-130720605
CCTCTCCTTCCCAAGTACAGAGATTAAAGG130720595CCTGCACCACCACCACCCAAGAGATGGTTCAGTAGATAAGA
chr1:131602449-131602459
ACTCAGCAACCATCCAAGGCCATTGCACGG131602449CCAGCACCACCAACAGTACAGCTCCCAGGACTACATCCATT
chr1:132115121-132115131
GGGTGCTTCCTTCCTCTTCCAACCCCTCCC132115121CCAGCACCACCAGTTATCAGTCCAATGCTTTCCTCCGGGAG
chr1:132794556-132794566
ACCACAAGCAAGTGTTCAGGAGTCAACAGA132794556CCTGCACCACCTTTATCCACTGAAGAGACTCTGGGCCCCAC
chr1:132872086-132872096
GAGTAAGGACGCCATCTCTGCCTGTACCAC132872086CCTGCACCACCCTGCACCACCCTGCACCACCCTGCAAGCCT
chr1:132872096-132872106
GCCATCTCTGCCTGTACCACCCTGCACCAC132872096CCTGCACCACCCTGCACCACCCTGCAAGCCTCAATGCTCCT
chr1:132872106-132872116
CCTGTACCACCCTGCACCACCCTGCACCAC132872106CCTGCACCACCCTGCAAGCCTCAATGCTCCTCCAGGGTCCC
chr1:133272300-133272310
ACATCCCCAGTACCCTCCCTACACATCCAC133272300CCTGCACCACCCACTGGCCTCACTCTAGACATTAATTACTT
chr1:134483064-134483074
CCTTGCCCCTCCCAGCCCCTGTGGGTAGGG134483064CCAGCACCACCGTGGGAACATTCCATATGAGTGTCTGATCC
chr1:134682132-134682142
GGGCTGAGGTAATTGGAAGCCTGCAAGAGG134682132CCAGCACCACCGCCAGCTCTTACCCTAGCTTCCCTGTGCAG
chr1:136087082-136087092
CCAATATGGATTCTGGGGCTGAGGTGTCTG136087082CCAGCACCACCTCGTCTGAGGCTGAGTCGGGAGCCCGCTCC
chr1:136201405-136201415
TGTACCACACGCTTGTGTTTGTGATGCAAA136201405CCTGCACCACCTGTACCGCCCGCCCCATGCCTGTTCTCGTT
chr1:136553587-136553597
TCTGCACCAGCATGCCCAGCAGCAACCGGC136553587CCAGCACCACCGCGATGTATTACTGAGCAGCGGTAGCAGGA
chr1:138093015-138093025
CTGCCTGCCACTAAGTGCTGGTATTAAAGG138093015CCTGCACCACCATGGAGTCTTACAGTGAACTCTAGCCTGTC
chr1:140106980-140106990
TGAGGGTGCTCCCTCACCCATGCCCCCTCT140106980CCTGCACCACCACTCCAGCTTATTTAAAAGGGTTTTGACAA
chr1:141380808-141380818
TATATACCAAGAAGAAAAGGTGCTCTGCTC141380808CCCGCACCACCACTGTACCCATTGGCTCCCTGGATCTGATT
chr1:144750750-144750760
CCATCACCAGCACTATCACCAGTTCCAGCA144750750CCAGCACCACCAGCACTGCCATCATCACCAGCAACACCAGC
chr1:145345473-145345483
TTGTTTGCAGGTGTATACAAATCAACAATA145345473CCAGCACCACCACCACCACCAGACTGAAACTTTTCTTATAT
chr1:145561990-145562000
GATTCTTCTAGAGGCATCCATTCAGTTTTA145561990CCAGCACCACCATCTTTAAACAACACTGTTTTTTGTTTTTT
chr1:146770874-146770884
CATCCTTCTACATACCTACAGCCAGTGAGA146770874CCAGCACCACCTGTTGAGGATGTTTTCTTTTTCCATTGTAT
chr1:151012584-151012594
GTCTGCAACACAAAATTGTCTGCAATGCTT151012584CCTGCACCACCAACTGCTTAGCCCCACCCACCCCCTTGCCA
chr1:151466195-151466205
TCTCTGACACACAGGTGTTGGGATGACTAG151466195CCTGCACCACCATGCCCAGCTTTTGACGTTGGTTTTTCAGA
chr1:152399047-152399057
CAATGGGGCTGAAAGACACGCAACACCAAC152399047CCTGCACCACCCGTGTTTCTGGCAATCTATTAAACAATGTC
chr1:153795708-153795718
TAAAGGTGGTTCCAGAACGACATTAGCAGT153795708CCCGCACCACCACAATTAGCAGTCATGCTAGGAAGACCCTG
chr1:153811786-153811796
TGCCTCAGCTTCTCTAGCAGCAACTGCAGG153811786CCTGCACCACCAGGCCCAGCTCTTGCTGTATTACACAATTC
chr1:153826051-153826061
CCTCTGCCTCCCATGTGCTGGGATTAAAAG153826051CCTGCACCACCACACCCGGCTCTTTTTAAATTTTTTTTTAA
chr1:154742584-154742594
TATGTTGAAAATGGAAATGCCCCTACAATT154742584CCTGCACCACCAGGTTCTGTGTTCTGCAGGGAAAGCCCAGG
chr1:155104498-155104508
CCCCTTGATGGTGTGTCCCAGCTCTGAAGA155104498CCTGCACCACCCACGTATGTCTGTCCCAGAGGCAGATGTCA
chr1:155409462-155409472
CTTGGGCTCATGAGATATGTGCAGAAATGA155409462CCTGCACCACCCTGACCAGGGGACCGTGCCAGGGCACTATT
chr1:155663592-155663602
CTGTTCTTTCAGAGGACCTGGCTTCAGTTC155663592CCAGCACCACCCAGGTGGTTCATAACCTGTAACTCCAGCTC
chr1:155850671-155850681
CACAGTCTTCCTGAGTGCTAGGATCACAGA155850671CCTGCACCACCATGCCTAGATACTAGATAATCTCTCTTCTT
chr1:156282108-156282118
ATCAAAGAACTGAGAGACGGTGTGTCTGTC156282108CCGGCACCACCATTCAGACGGCTACCCGCCCTTAACAGCAG
chr1:156496274-156496284
GCCATAGCCAATGAGTGCTGGGATTATAGG156496274CCAGCACCACCATATCACATTTCACTACTCTTAACACACTC
chr1:156776237-156776247
ACCATCTTCACTGTTTCATGAATACTGACC156776237CCTGCACCACCCAATTCACACCCACATCCTACATACTTCGC
chr1:157445425-157445435
GCAGCAGCACCACCACCAGCAGCAGCACCA157445425CCAGCACCACCACCACCACCACCACCACCACCACCACCAAA
chr1:159698999-159699009
CTGGCTGCCTTTGTCACAGCTGTTCTGTGC159698999CCTGCACCACCTCACCTCAGGCAATCTCAAAGCCCACAGCT
chr1:161443808-161443818
TTCCCCTCCCATCTAAACAACATGCATGCC161443808CCAGCACCACCATGCAGAATGCACAAACCTGGAACTGTAGC
chr1:164110818-164110828
AGCCACACTCTTAAGTGCTGCGTCATCTCT164110818CCAGCACCACCTAATTTTTAAAAATTGAAATACAGCGACTG
chr1:164124804-164124814
TCTCCTCTTCCTTCTCTACCCAGTTTTCCA164124804CCAGCACCACCTCCCCTCTCCCCCAGATCTACTGCTCTTCT
chr1:164605667-164605677
TGCCTATGTATGCATGGTGGCCAGCGGTAG164605667CCAGCACCACCCTGCAACGGCACATGTGGCTTCCCACATGG
chr1:164926944-164926954
TACCCCTGAGCATACTAGCTTTAGCTCAAC164926944CCAGCACCACCACGCCATCTTACTAACAGAGAAACTAACTT
chr1:165017909-165017919
ACACACACACACTCGCACACACCATGGCCA165017909CCAGCACCACCATCCGGTAACAACAACAGCAACATAAGAAC
chr1:165022146-165022156
CGCCCGGGCTTCACGGATTCGTTCCAGCGC165022146CCAGCACCACCATGTGCCAGGGCCTGGAACAACGCAGGCCT
chr1:165058065-165058075
CATCTGCCTCTCAAGTGCTGAGATTAAAGG165058065CCTGCACCACCATGCCCAGCTACCTTGCTGTTTTTTATTTA
chr1:165949290-165949300
GACCCCACACACACACACACATCACCACCA165949290CCAGCACCACCAACAACAACAATAGCCCCACTGGGAATGGT
chr1:166491334-166491344
AATGAGAGTGAGCAAACTTCCCTGAGAAAC166491334CCAGCACCACCCAGATGCTGAGTGGAACTGAGGACACAGAA
chr1:167096369-167096379
CTCAGTTGGCTGGACAGGCTTCATTCAGAT167096369CCAGCACCACCACTCTCTGGGCTATGGGACTCGAGGCTGCT
chr1:167263893-167263903
CCTAGATCAGAGCGGCCCAGGCCACTGTGC167263893CCAGCACCACCCCTAAGCAGGTAGTCCTGGCTGTATATGGA
chr1:167423929-167423939
GCCTCTGGCGAGCTGCACTATGCCGTAACA167423929CCAGCACCACCCTTGATTAACGCTCTGAGAGCCAGTGTCCT
chr1:167448196-167448206
TGCCTTCCACTGCCCGCTCCCTTTGAATCC167448196CCCGCACCACCGGTGGTCTCAGCCCACACAGGCCCCGAGCT
chr1:167660264-167660274
TCTACTTAGGAATGTGACCTATGCCCCCAC167660264CCGGCACCACCCAGGAAATGGTTTACCTCCTACTCTAAGCG
chr1:169100957-169100967
GCATAGGACTCATCTGCAGACATTAGTTGT169100957CCTGCACCACCCACTAAGTGCCACTGAGTCTCTTCTCCTTC
chr1:169719064-169719074
TCTGCACCAGCACCAGCACCAGCACCAGCA169719064CCAGCACCACCAGCATTGTATTTTCAACTGGAATATAGAAT
chr1:170322780-170322790
CACACAAACATCTTTTACCCCGTATGATGT170322780CCTGCACCACCTCAGGACACTGCCACAGAAAGCCATATGTG
chr1:170887793-170887803
CCTCTGCCTCCCAAATGCTGGGATTAAAGG170887793CCTGCACCACCATGCCCGGCTGTCAGTTTTTAATTTCCAAG
chr1:170930773-170930783
CTACTAGTTTTCTAATGGTCCTTATGCTGC170930773CCAGCACCACCTCACCATGCGTATGTTTAGAATTTCTCTAT
chr1:171906459-171906469
TGCCTCCCTATTGAGTGCTGGGATTAAAGG171906459CCTGCACCACCACACCCGGCTGAGATCCTGTCTTAAGAACA
chr1:174436548-174436558
TCCTCCTTTGGAAACAACTGTAATGTCCCA174436548CCCGCACCACCTCTGCCTTGTACAGAGTCCTCCAGTTTCAT
chr1:175615624-175615634
TTTATACATTGCTCCCATTCATACGAGACC175615624CCTGCACCACCTTGTTAGTCTCCTTTCAGTGGCTGTAACAA
chr1:175700170-175700180
CAACTCCTGAGTGCTAAGATTACAGGCAGG175700170CCCGCACCACCATGCTTCTCATTTTATGCTGTACTGGCTAC
chr1:176424898-176424908
CCGCCTCCTGAAGACTCCACCACCTCCTAA176424898CCAGCACCACCAGATGGGGACCAAGTGTTCAGAACATGTCC
chr1:177089473-177089483
CTCGGCCACCCTGATAGCTGGAATTGCAGG177089473CCTGCACCACCATATCCAGTTCCAACTCTTAAATGTTTGAC
chr1:177549091-177549101
ATGTAGGGGTGTGGCTGTCAGTACACCTTC177549091CCAGCACCACCTGAACCTCACATTTTACCTGTCTTCCCCAT
chr1:177990449-177990459
CCCAAACTTGTGTGTGGTGGCCAACGGTAG177990449CCAGCACCACCTTGTAATGGCATATGTGGCTTCCCACATCT
chr1:177997296-177997306
CCCAAACTTATGCATGGTGGCCAGCGGTAG177997296CCAGCACCACCTTGTAATGGCATATGTGGCTTCCCACAAGC
chr1:178825490-178825500
ATAGGGGCCAGAGAGCAAGTCATGGATGAT178825490CCTGCACCACCACAGGGGAATGAGAGGTAGAGGGTGGACCC
chr1:178888557-178888567
TTCTTCCTTCTATTTTAAGCTGAGTTTTCT178888557CCAGCACCACCCCAGCCAGAACAGAGAGAGTATGTGGCACA
chr1:179316404-179316414
TGGCCTGCTCAGCCCACTTTCTTATAGAAC179316404CCAGCACCACCAGCCCAGGGATGACACCGCCCACAAACGGC
chr1:180187602-180187612
TGGCCACCATCTGAGTATTGGGATTTCAGG180187602CCTGCACCACCAGGGGCAGCTAACCTCCTACTTCATCATTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://crispr.dbcls.jp/detail/en/mm39/CCNGCACCACC
lang : en | db : mm39 | k : 0 | strand : | nogap : | query_string : CCNGCACCACC | format : html | download : | debug : 

0.006 | 0.006 | search_start;
0.083 | 0.077 | search_plus_done; http://172.18.8.138:28851/match?q=CCNGCACCACC&k=0&no_gap=0&offset=0&limit=200
0.117 | 0.034 | search_minus_done; http://172.18.8.138:28851/match?q=GGTGGTGCNGG&k=0&no_gap=0&offset=0&limit=0
0.117 | 0.000 | cgi_end;

CRISPRdirect | DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use CRISPRdirect in your work, please cite:
Naito Y, Hino K, Bono H, Ui-Tei K. (2015)
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.
Bioinformatics, 31, 1120-1123. [Full Text]